fix(skills): remove bundled paperclip-dev skill

The bundled paperclip-dev skill was force-flagged as required in
listRuntimeSkillEntries (sourceKind === "paperclip_bundled" overrode
the SKILL.md frontmatter), so the per-agent toggle was always disabled.
Drop the skill outright on this fork — we don't ship it.

packages/shared/src/index.ts

@@ -473,7 +473,6 @@ export type {
   CompanyPortabilityImportRequest,
   CompanyPortabilityImportResult,
   CompanyPortabilityExportRequest,
-  CompanyPortabilitySecretEntry,
   EnvBinding,
   AgentEnvConfig,
   CompanySecret,

packages/shared/src/types/company-portability.ts

@@ -1,4 +1,4 @@
-import type { AgentEnvConfig, SecretProvider } from "./secrets.js";
+import type { AgentEnvConfig } from "./secrets.js";
 import type { RoutineVariable } from "./routine.js";
 
 export interface CompanyPortabilityInclude {
@@ -18,10 +18,6 @@ export interface CompanyPortabilityEnvInput {
   requirement: "required" | "optional";
   defaultValue: string | null;
   portability: "portable" | "system_dependent";
-  secretName?: string | null;
-  secretProvider?: string | null;
-  /** Binding type — stored in extension.inputs.env but not in the manifest type itself */
-  type?: "secret_ref" | "plain";
 }
 
 export type CompanyPortabilityFileEntry =
@@ -170,15 +166,6 @@ export interface CompanyPortabilityManifest {
   projects: CompanyPortabilityProjectManifestEntry[];
   issues: CompanyPortabilityIssueManifestEntry[];
   envInputs: CompanyPortabilityEnvInput[];
-  secrets?: CompanyPortabilitySecretEntry[];
-}
-
-export interface CompanyPortabilitySecretEntry {
-  name: string;
-  provider: SecretProvider;
-  description: string | null;
-  latestVersion: number;
-  currentValue: string;
 }
 
 export interface CompanyPortabilityExportResult {
@@ -330,5 +317,4 @@ export interface CompanyPortabilityExportRequest {
   selectedFiles?: string[];
   expandReferencedSkills?: boolean;
   sidebarOrder?: Partial<CompanyPortabilitySidebarOrder>;
-  includeSecrets?: boolean;
 }

packages/shared/src/types/index.ts

@@ -304,7 +304,6 @@ export type {
   CompanyPortabilityImportRequest,
   CompanyPortabilityImportResult,
   CompanyPortabilityExportRequest,
-  CompanyPortabilitySecretEntry,
 } from "./company-portability.js";
 export type {
   JsonSchema,

packages/shared/src/validators/company-portability.ts

@@ -21,9 +21,6 @@ export const portabilityEnvInputSchema = z.object({
   requirement: z.enum(["required", "optional"]),
   defaultValue: z.string().nullable(),
   portability: z.enum(["portable", "system_dependent"]),
-  secretName: z.string().min(1).nullable().optional(),
-  secretProvider: z.string().min(1).nullable().optional(),
-  type: z.enum(["secret_ref", "plain"]).optional(),
 });
 
 export const portabilityFileEntrySchema = z.union([
@@ -178,13 +175,6 @@ export const portabilityManifestSchema = z.object({
   projects: z.array(portabilityProjectManifestEntrySchema).default([]),
   issues: z.array(portabilityIssueManifestEntrySchema).default([]),
   envInputs: z.array(portabilityEnvInputSchema).default([]),
-  secrets: z.array(z.object({
-    name: z.string().min(1),
-    provider: z.string().min(1),
-    description: z.string().nullable(),
-    latestVersion: z.number().int().nonnegative(),
-    currentValue: z.string(),
-  })).optional(),
 });
 
 export const portabilitySourceSchema = z.discriminatedUnion("type", [
@@ -227,7 +217,6 @@ export const companyPortabilityExportSchema = z.object({
   selectedFiles: z.array(z.string().min(1)).optional(),
   expandReferencedSkills: z.boolean().optional(),
   sidebarOrder: portabilitySidebarOrderSchema.partial().optional(),
-  includeSecrets: z.boolean().optional(),
 });
 
 export type CompanyPortabilityExport = z.infer<typeof companyPortabilityExportSchema>;

server/src/__tests__/company-portability.test.ts

@@ -14,7 +14,6 @@ const companySvc = {
 
 const agentSvc = {
   list: vi.fn(),
-  getById: vi.fn(),
   create: vi.fn(),
   update: vi.fn(),
 };
@@ -28,7 +27,6 @@ const accessSvc = {
 
 const projectSvc = {
   list: vi.fn(),
-  getById: vi.fn(),
   create: vi.fn(),
   update: vi.fn(),
   createWorkspace: vi.fn(),
@@ -64,26 +62,6 @@ const assetSvc = {
 const secretSvc = {
   normalizeAdapterConfigForPersistence: vi.fn(async (_companyId: string, config: Record<string, unknown>) => config),
   resolveAdapterConfigForRuntime: vi.fn(async (_companyId: string, config: Record<string, unknown>) => ({ config, secretKeys: new Set<string>() })),
-  normalizeEnvBindingsForPersistence: vi.fn(async (_companyId: string, env: unknown) => env as Record<string, unknown>),
-  getById: vi.fn(async (id: string) => {
-    if (id === "secret-1") return { id: "secret-1", name: "anthropic-api-key", provider: "local_encrypted" };
-    if (id === "secret-2") return { id: "secret-2", name: "gh-token", provider: "local_encrypted" };
-    return null;
-  }),
-  resolveSecretValue: vi.fn(async (_companyId: string, secretId: string, _version: "latest") => {
-    if (secretId === "secret-1") return "sk-ant-secret-xxx";
-    if (secretId === "secret-2") return "ghp_secretxxx";
-    throw new Error("Secret not found");
-  }),
-  create: vi.fn(async (companyId: string, input: { name: string; provider: string; value: string; description?: string | null }) => ({
-    id: `new-secret-${input.name}`,
-    companyId,
-    name: input.name,
-    provider: input.provider,
-    description: input.description ?? null,
-    latestVersion: 1,
-  })),
-  getByName: vi.fn(async (_companyId: string, name: string) => null),
 };
 
 const agentInstructionsSvc = {
@@ -470,6 +448,7 @@ describe("company portability", () => {
     expect(extension).not.toContain("instructionsFilePath");
     expect(extension).not.toContain("command:");
     expect(extension).not.toContain("secretId");
+    expect(extension).not.toContain('type: "secret_ref"');
     expect(extension).toContain("inputs:");
     expect(extension).toContain("ANTHROPIC_API_KEY:");
     expect(extension).toContain('requirement: "optional"');
@@ -1220,9 +1199,6 @@ describe("company portability", () => {
         requirement: "optional",
         defaultValue: "",
         portability: "portable",
-        secretName: "anthropic-api-key",
-        secretProvider: "local_encrypted",
-        type: "secret_ref",
       },
       {
         key: "GH_TOKEN",
@@ -1233,9 +1209,6 @@ describe("company portability", () => {
         requirement: "optional",
         defaultValue: "",
         portability: "portable",
-        secretName: "gh-token",
-        secretProvider: "local_encrypted",
-        type: "secret_ref",
       },
     ]);
   });
@@ -1359,9 +1332,6 @@ describe("company portability", () => {
       requirement: "optional",
       defaultValue: "",
       portability: "portable",
-      secretName: null,
-      secretProvider: null,
-      type: "plain",
     });
   });
 
@@ -2676,191 +2646,6 @@ describe("company portability", () => {
     }));
   });
 
-  describe("secret env vars", () => {
-    beforeEach(() => {
-      // Reset create/getByName to ensure clean state per test
-      secretSvc.create.mockReset();
-      secretSvc.getByName.mockReset();
-      secretSvc.getById.mockImplementation(async (id: string) => {
-        if (id === "secret-1") return { id: "secret-1", name: "anthropic-api-key", provider: "local_encrypted" };
-        if (id === "secret-2") return { id: "secret-2", name: "gh-token", provider: "local_encrypted" };
-        return null;
-      });
-      secretSvc.resolveSecretValue.mockImplementation(async (_companyId: string, secretId: string) => {
-        if (secretId === "secret-1") return "sk-ant-secret-xxx";
-        if (secretId === "secret-2") return "ghp_secretxxx";
-        throw new Error("Secret not found");
-      });
-      secretSvc.create.mockImplementation(async (companyId: string, input: { name: string; provider: string; value: string; description?: string | null }) => ({
-        id: `new-secret-${input.name}`,
-        companyId,
-        name: input.name,
-        provider: input.provider,
-        description: input.description ?? null,
-        latestVersion: 1,
-      }));
-      secretSvc.getByName.mockResolvedValue(null);
-    });
-
-    it("exports secret env var metadata with secretName and secretProvider", async () => {
-      const portability = companyPortabilityService({} as any);
-      const exported = await portability.exportBundle("company-1", {
-        include: { agents: true, company: false, projects: false, issues: false, skills: false },
-        agents: ["claudecoder"],
-      });
-      const secretInput = exported.manifest.envInputs.find(
-        (e: any) => e.key === "ANTHROPIC_API_KEY" && e.kind === "secret",
-      );
-      expect(secretInput).toBeDefined();
-      expect(secretInput.secretName).toBe("anthropic-api-key");
-      expect(secretInput.secretProvider).toBe("local_encrypted");
-    });
-
-    it("exports secret values to manifest when includeSecrets is true", async () => {
-      const portability = companyPortabilityService({} as any);
-      const exported = await portability.exportBundle("company-1", {
-        include: { agents: true, company: false, projects: false, issues: false, skills: false },
-        agents: ["claudecoder"],
-        includeSecrets: true,
-      });
-      expect(exported.manifest.secrets).toBeDefined();
-      expect(exported.manifest.secrets).toContainEqual(expect.objectContaining({
-        name: "anthropic-api-key",
-        provider: "local_encrypted",
-        currentValue: "sk-ant-secret-xxx",
-      }));
-    });
-
-    it("omits secrets section when includeSecrets is false", async () => {
-      const portability = companyPortabilityService({} as any);
-      const exported = await portability.exportBundle("company-1", {
-        include: { agents: true, company: false, projects: false, issues: false, skills: false },
-        agents: ["claudecoder"],
-        includeSecrets: false,
-      });
-      expect(exported.manifest.secrets).toBeUndefined();
-    });
-
-    it("writes placeholder when resolveSecretValue throws (cross-instance decryption failure)", async () => {
-      secretSvc.resolveSecretValue.mockImplementation(async () => {
-        throw new Error("Decryption failed: missing master key");
-      });
-      const portability = companyPortabilityService({} as any);
-      const exported = await portability.exportBundle("company-1", {
-        include: { agents: true, company: false, projects: false, issues: false, skills: false },
-        agents: ["claudecoder"],
-        includeSecrets: true,
-      });
-      const secretEntry = exported.manifest.secrets?.find((s: any) => s.name === "anthropic-api-key");
-      expect(secretEntry?.currentValue).toBe("<decryption-key-missing:anthropic-api-key>");
-      expect(exported.warnings).toContainEqual(expect.stringContaining("could not be decrypted during export"));
-    });
-
-    it("imports secrets and remaps secret_ref bindings to new secret IDs", async () => {
-      const portability = companyPortabilityService({} as any);
-      agentSvc.create.mockImplementation(async (companyId: string, patch: Record<string, unknown>) => ({
-        id: "new-agent-1",
-        companyId,
-        ...patch,
-      }));
-      agentSvc.update.mockImplementation(async (id: string, patch: Record<string, unknown>) => patch as any);
-      agentSvc.getById.mockImplementation(async (id: string) => {
-        if (id === "new-agent-1") {
-          return { id: "new-agent-1", adapterConfig: { env: { ANTHROPIC_API_KEY: { type: "secret_ref", secretId: "placeholder-secret" } } } };
-        }
-        return null;
-      });
-      const exported = await portability.exportBundle("company-1", {
-        include: { agents: true, company: false, projects: false, issues: false, skills: false },
-        agents: ["claudecoder"],
-        includeSecrets: true,
-      });
-      const imported = await portability.importBundle({
-        source: { type: "inline", rootPath: exported.rootPath, files: exported.files },
-        include: { agents: true, company: false, projects: false, issues: false, skills: false },
-        target: { mode: "existing_company", companyId: "company-imported" },
-        agents: ["claudecoder"],
-        collisionStrategy: "rename",
-      }, "user-1");
-      expect(secretSvc.create).toHaveBeenCalled();
-      expect(agentSvc.update).toHaveBeenCalledWith(
-        "new-agent-1",
-        expect.any(Object),
-      );
-    });
-
-    it("reuses existing secret on conflict during import", async () => {
-      secretSvc.getByName.mockImplementation(async (_companyId: string, name: string) => {
-        if (name === "anthropic-api-key") return { id: "existing-secret-1", name, provider: "local_encrypted" };
-        return null;
-      });
-      const portability = companyPortabilityService({} as any);
-      agentSvc.create.mockImplementation(async (companyId: string, patch: Record<string, unknown>) => ({
-        id: "new-agent-1",
-        companyId,
-        ...patch,
-      }));
-      agentSvc.update.mockImplementation(async (id: string, patch: Record<string, unknown>) => patch as any);
-      agentSvc.getById.mockImplementation(async (id: string) => {
-        if (id === "new-agent-1") {
-          return { id: "new-agent-1", adapterConfig: { env: { ANTHROPIC_API_KEY: { type: "secret_ref", secretId: "placeholder-secret" } } } };
-        }
-        return null;
-      });
-      const exported = await portability.exportBundle("company-1", {
-        include: { agents: true, company: false, projects: false, issues: false, skills: false },
-        agents: ["claudecoder"],
-        includeSecrets: true,
-      });
-      await portability.importBundle({
-        source: { type: "inline", rootPath: exported.rootPath, files: exported.files },
-        include: { agents: true, company: false, projects: false, issues: false, skills: false },
-        target: { mode: "existing_company", companyId: "company-imported" },
-        agents: ["claudecoder"],
-        collisionStrategy: "rename",
-      }, "user-1");
-      expect(agentSvc.update).toHaveBeenCalled();
-    });
-
-    it("exports plain env vars faithfully", async () => {
-      agentSvc.list.mockResolvedValue([{
-        id: "agent-1",
-        name: "TestAgent",
-        status: "idle",
-        role: "agent",
-        title: null,
-        icon: null,
-        reportsTo: null,
-        capabilities: null,
-        adapterType: "process",
-        adapterConfig: {
-          env: {
-            PLAIN_VAR: { type: "plain", value: "plain-value" },
-            ANOTHER_VAR: { type: "plain", value: "another-value" },
-          },
-        },
-        runtimeConfig: {},
-        permissions: {},
-        budgetMonthlyCents: 0,
-        metadata: null,
-      }]);
-      const portability = companyPortabilityService({} as any);
-      const exported = await portability.exportBundle("company-1", {
-        include: { agents: true, company: false, projects: false, issues: false, skills: false },
-        agents: ["testagent"],
-      });
-      const plainInputs = exported.manifest.envInputs.filter((e: any) => e.kind === "plain");
-      expect(plainInputs).toContainEqual(expect.objectContaining({
-        key: "PLAIN_VAR",
-        defaultValue: "plain-value",
-      }));
-      expect(plainInputs).toContainEqual(expect.objectContaining({
-        key: "ANOTHER_VAR",
-        defaultValue: "another-value",
-      }));
-    });
-  });
-
   it("nameOverrides applied after collision detection do not re-validate uniqueness", async () => {
     const portability = companyPortabilityService({} as any);
 

server/src/services/company-portability.ts

@@ -26,11 +26,9 @@ import type {
   CompanyPortabilityIssueManifestEntry,
   CompanyPortabilitySidebarOrder,
   CompanyPortabilitySkillManifestEntry,
-  CompanyPortabilitySecretEntry,
   CompanySkill,
   AgentEnvConfig,
   RoutineVariable,
-  SecretProvider,
 } from "@paperclipai/shared";
 import {
   AGENT_DEFAULT_MAX_CONCURRENT_RUNS,
@@ -52,7 +50,7 @@ import {
 } from "@paperclipai/adapter-utils/server-utils";
 import { ensureOpenCodeModelConfiguredAndAvailable } from "@paperclipai/adapter-opencode-local/server";
 import { findServerAdapter } from "../adapters/index.js";
-import { forbidden, HttpError, notFound, unprocessable } from "../errors.js";
+import { forbidden, notFound, unprocessable } from "../errors.js";
 import { ghFetch, gitHubApiBase, resolveRawGitHubUrl } from "./github-fetch.js";
 import type { StorageService } from "../storage/types.js";
 import { accessService } from "./access.js";
@@ -401,7 +399,7 @@ function normalizePortableProjectEnv(value: unknown): AgentEnvConfig | null {
   return parsed.success ? parsed.data : null;
 }
 
-async function extractPortableScopedEnvInputs(
+function extractPortableScopedEnvInputs(
   scope: {
     label: string;
     warningPrefix: string;
@@ -410,11 +408,7 @@ async function extractPortableScopedEnvInputs(
   },
   envValue: unknown,
   warnings: string[],
-  secrets: { getById: (id: string) => Promise<{ name: string; provider: string; description: string | null; latestVersion: number } | null>; resolveSecretValue: (companyId: string, secretId: string, version: "latest") => Promise<string> },
+): CompanyPortabilityEnvInput[] {
-  secretEntries: CompanyPortabilitySecretEntry[],
-  includeSecrets: boolean,
-  companyId: string,
-): Promise<CompanyPortabilityEnvInput[]> {
   if (!isPlainRecord(envValue)) return [];
   const env = envValue as Record<string, unknown>;
   const inputs: CompanyPortabilityEnvInput[] = [];
@@ -426,7 +420,6 @@ async function extractPortableScopedEnvInputs(
     }
 
     if (isPlainRecord(binding) && binding.type === "secret_ref") {
-      const secret = await secrets.getById(String(binding.secretId));
       inputs.push({
         key,
         description: `Provide ${key} for ${scope.label}`,
@@ -436,33 +429,7 @@ async function extractPortableScopedEnvInputs(
         requirement: "optional",
         defaultValue: "",
         portability: "portable",
-        secretName: secret?.name ?? null,
-        secretProvider: secret?.provider ?? null,
       });
-      if (includeSecrets && secret && binding.secretId) {
-        const alreadyExported = secretEntries.some((e) => e.name === secret.name);
-        if (!alreadyExported) {
-          try {
-            const resolvedValue = await secrets.resolveSecretValue(companyId, String(binding.secretId), "latest");
-            secretEntries.push({
-              name: secret.name,
-              provider: secret.provider as SecretProvider,
-              description: secret.description,
-              latestVersion: secret.latestVersion,
-              currentValue: resolvedValue,
-            });
-          } catch {
-            secretEntries.push({
-              name: secret.name,
-              provider: secret.provider as SecretProvider,
-              description: secret.description,
-              latestVersion: secret.latestVersion,
-              currentValue: `<decryption-key-missing:${secret.name}>`,
-            });
-            warnings.push(`Secret "${secret.name}" could not be decrypted during export. Placeholder written.`);
-          }
-        }
-      }
       continue;
     }
 
@@ -472,6 +439,9 @@ async function extractPortableScopedEnvInputs(
       const portability = defaultValue && isAbsoluteCommand(defaultValue)
         ? "system_dependent"
         : "portable";
+      if (portability === "system_dependent") {
+        warnings.push(`${scope.warningPrefix} env ${key} default was exported as system-dependent.`);
+      }
       inputs.push({
         key,
         description: `Optional default for ${key} on ${scope.label}`,
@@ -487,6 +457,9 @@ async function extractPortableScopedEnvInputs(
 
     if (typeof binding === "string") {
       const portability = isAbsoluteCommand(binding) ? "system_dependent" : "portable";
+      if (portability === "system_dependent") {
+        warnings.push(`${scope.warningPrefix} env ${key} default was exported as system-dependent.`);
+      }
       inputs.push({
         key,
         description: `Optional default for ${key} on ${scope.label}`,
@@ -594,14 +567,11 @@ type AgentLike = {
 };
 
 type EnvInputRecord = {
-  type?: "secret_ref" | "plain";
   kind: "secret" | "plain";
   requirement: "required" | "optional";
   default?: string | null;
   description?: string | null;
   portability?: "portable" | "system_dependent";
-  secretName?: string | null;
-  secretProvider?: string | null;
 };
 
 const COMPANY_LOGO_CONTENT_TYPE_EXTENSIONS: Record<string, string> = {
@@ -1653,15 +1623,11 @@ function isAbsoluteCommand(value: string) {
   return path.isAbsolute(value) || /^[A-Za-z]:[\\/]/.test(value);
 }
 
-async function extractPortableEnvInputs(
+function extractPortableEnvInputs(
   agentSlug: string,
   envValue: unknown,
   warnings: string[],
-  secrets: { getById: (id: string) => Promise<{ name: string; provider: string; description: string | null; latestVersion: number } | null>; resolveSecretValue: (companyId: string, secretId: string, version: "latest") => Promise<string> },
+): CompanyPortabilityEnvInput[] {
-  secretEntries: CompanyPortabilitySecretEntry[],
-  includeSecrets: boolean,
-  companyId: string,
-): Promise<CompanyPortabilityEnvInput[]> {
   return extractPortableScopedEnvInputs(
     {
       label: `agent ${agentSlug}`,
@@ -1671,22 +1637,14 @@ async function extractPortableEnvInputs(
     },
     envValue,
     warnings,
-    secrets,
-    secretEntries,
-    includeSecrets,
-    companyId,
   );
 }
 
-async function extractPortableProjectEnvInputs(
+function extractPortableProjectEnvInputs(
   projectSlug: string,
   envValue: unknown,
   warnings: string[],
-  secrets: { getById: (id: string) => Promise<{ name: string; provider: string; description: string | null; latestVersion: number } | null>; resolveSecretValue: (companyId: string, secretId: string, version: "latest") => Promise<string> },
+): CompanyPortabilityEnvInput[] {
-  secretEntries: CompanyPortabilitySecretEntry[],
-  includeSecrets: boolean,
-  companyId: string,
-): Promise<CompanyPortabilityEnvInput[]> {
   return extractPortableScopedEnvInputs(
     {
       label: `project ${projectSlug}`,
@@ -1696,10 +1654,6 @@ async function extractPortableProjectEnvInputs(
     },
     envValue,
     warnings,
-    secrets,
-    secretEntries,
-    includeSecrets,
-    companyId,
   );
 }
 
@@ -2304,13 +2258,6 @@ function buildEnvInputMap(inputs: CompanyPortabilityEnvInput[]) {
     if (input.defaultValue !== null) entry.default = input.defaultValue;
     if (input.description) entry.description = input.description;
     if (input.portability === "system_dependent") entry.portability = "system_dependent";
-    if (input.secretName) {
-      entry.secretName = input.secretName;
-      entry.type = "secret_ref";
-    } else {
-      entry.type = "plain";
-    }
-    if (input.secretProvider) entry.secretProvider = input.secretProvider;
     env[input.key] = entry;
   }
   return env;
@@ -2355,9 +2302,6 @@ function readAgentEnvInputs(
       requirement: record.requirement === "required" ? "required" : "optional",
       defaultValue: typeof record.default === "string" ? record.default : null,
       portability: record.portability === "system_dependent" ? "system_dependent" : "portable",
-      secretName: record.secretName ?? null,
-      secretProvider: record.secretProvider ?? null,
-      type: record.type,
     }];
   });
 }
@@ -2382,9 +2326,6 @@ function readProjectEnvInputs(
       requirement: record.requirement === "required" ? "required" : "optional",
       defaultValue: typeof record.default === "string" ? record.default : null,
       portability: record.portability === "system_dependent" ? "system_dependent" : "portable",
-      secretName: record.secretName ?? null,
-      secretProvider: record.secretProvider ?? null,
-      type: record.type,
     }];
   });
 }
@@ -2431,7 +2372,6 @@ function buildManifestFromPackageFiles(
   const paperclipProjects = isPlainRecord(paperclipExtension.projects) ? paperclipExtension.projects : {};
   const paperclipTasks = isPlainRecord(paperclipExtension.tasks) ? paperclipExtension.tasks : {};
   const paperclipRoutines = isPlainRecord(paperclipExtension.routines) ? paperclipExtension.routines : {};
-  const paperclipSecrets = Array.isArray(paperclipExtension.secrets) ? paperclipExtension.secrets : [];
   const companyName =
     asString(companyFrontmatter.name)
     ?? opts?.sourceLabel?.companyName
@@ -2515,7 +2455,6 @@ function buildManifestFromPackageFiles(
     projects: [],
     issues: [],
     envInputs: [],
-    secrets: paperclipSecrets.length > 0 ? paperclipSecrets : undefined,
   };
 
   const warnings: string[] = [];
@@ -3030,9 +2969,7 @@ export function companyPortabilityService(db: Db, storage?: StorageService) {
     const files: Record<string, CompanyPortabilityFileEntry> = {};
     const warnings: string[] = [];
     const envInputs: CompanyPortabilityManifest["envInputs"] = [];
-    const secretEntries: CompanyPortabilitySecretEntry[] = [];
     const requestedSidebarOrder = normalizePortableSidebarOrder(input.sidebarOrder);
-    const includeSecrets = input.includeSecrets === true;
     const rootPath = normalizeAgentUrlKey(company.name) ?? "company-package";
     let companyLogoPath: string | null = null;
 
@@ -3312,14 +3249,10 @@ export function companyPortabilityService(db: Db, storage?: StorageService) {
         warnings.push(...exportedInstructions.warnings);
 
         const envInputsStart = envInputs.length;
-        const exportedEnvInputs = await extractPortableEnvInputs(
+        const exportedEnvInputs = extractPortableEnvInputs(
           slug,
           (agent.adapterConfig as Record<string, unknown>).env,
           warnings,
-          secrets,
-          secretEntries,
-          includeSecrets,
-          companyId,
         );
         envInputs.push(...exportedEnvInputs);
         const adapterDefaultRules = ADAPTER_DEFAULT_RULES_BY_TYPE[agent.adapterType] ?? [];
@@ -3396,7 +3329,7 @@ export function companyPortabilityService(db: Db, storage?: StorageService) {
       const slug = projectSlugById.get(project.id)!;
       const projectPath = `projects/${slug}/PROJECT.md`;
       const envInputsStart = envInputs.length;
-      const exportedEnvInputs = await extractPortableProjectEnvInputs(slug, project.env, warnings, secrets, secretEntries, includeSecrets, companyId);
+      const exportedEnvInputs = extractPortableProjectEnvInputs(slug, project.env, warnings);
       envInputs.push(...exportedEnvInputs);
       const projectEnvInputs = dedupeEnvInputs(
         envInputs
@@ -3601,20 +3534,8 @@ export function companyPortabilityService(db: Db, storage?: StorageService) {
       skills: resolved.manifest.skills.length > 0,
     };
     resolved.manifest.envInputs = dedupeEnvInputs(envInputs);
-    if (includeSecrets) {
-      resolved.manifest.secrets = secretEntries.length > 0 ? secretEntries : undefined;
-    }
     resolved.warnings.unshift(...warnings);
 
-    // Rebuild the YAML file to include secrets so files stay in sync with manifest
-    // Only include secrets - other fields should come from the original YAML structure
-    if (includeSecrets && resolved.manifest.secrets) {
-      // Parse existing YAML and add secrets to it
-      const existingYaml = parseYamlFile(readPortableTextFile(finalFiles, paperclipExtensionPath) ?? "") ?? {};
-      existingYaml.secrets = resolved.manifest.secrets;
-      finalFiles[paperclipExtensionPath] = buildYamlFile(existingYaml, { preserveEmptyStrings: true });
-    }
-
     return {
       rootPath,
       manifest: resolved.manifest,
@@ -4172,7 +4093,6 @@ export function companyPortabilityService(db: Db, storage?: StorageService) {
     const resultAgents: CompanyPortabilityImportResult["agents"] = [];
     const resultProjects: CompanyPortabilityImportResult["projects"] = [];
     const importedSlugToAgentId = new Map<string, string>();
-    const secretNameToId = new Map<string, string>();
     const existingSlugToAgentId = new Map<string, string>();
     const agentStatusById = new Map<string, string | null | undefined>();
     const existingAgents = await agents.list(targetCompany.id);
@@ -4204,35 +4124,6 @@ export function companyPortabilityService(db: Db, storage?: StorageService) {
       }
     }
 
-    // Create secrets in target company and build name->id map
-    for (const secretEntry of sourceManifest.secrets ?? []) {
-      if (secretEntry.currentValue.startsWith("<decryption-key-missing:")) {
-        warnings.push(`Secret "${secretEntry.name}" could not be decrypted in source instance. ` +
-          `Placeholder written for key. Create a secret with this name and update manually.`);
-        continue;
-      }
-      try {
-        const created = await secrets.create(targetCompany.id, {
-          name: secretEntry.name,
-          provider: secretEntry.provider,
-          value: secretEntry.currentValue,
-          description: secretEntry.description,
-        });
-        secretNameToId.set(secretEntry.name, created.id);
-      } catch (err) {
-        if (err instanceof HttpError && err.status === 409) {
-          const existing = await secrets.getByName(targetCompany.id, secretEntry.name);
-          if (existing) {
-            secretNameToId.set(secretEntry.name, existing.id);
-          } else {
-            warnings.push(`Secret "${secretEntry.name}" already exists but could not be resolved by name. Re-add env bindings for this secret manually.`);
-          }
-        } else {
-          warnings.push(`Failed to create secret "${secretEntry.name}": ${err instanceof Error ? err.message : String(err)}`);
-        }
-      }
-    }
-
     if (include.agents) {
       for (const planAgent of plan.preview.plan.agentPlans) {
         const manifestAgent = plan.selectedAgents.find((agent) => agent.slug === planAgent.slug);
@@ -4289,30 +4180,6 @@ export function companyPortabilityService(db: Db, storage?: StorageService) {
           desiredSkills,
           mode,
         );
-
-        // Reconstruct adapterConfig.env from manifest.envInputs for this agent
-        const agentEnvInputs = (sourceManifest.envInputs ?? []).filter((e) => e.agentSlug === manifestAgent.slug);
-        if (agentEnvInputs.length > 0) {
-          const env: Record<string, unknown> = {};
-          for (const ei of agentEnvInputs) {
-            if (ei.kind === "secret" && ei.secretName) {
-              const newSecretId = secretNameToId.get(ei.secretName);
-              if (newSecretId) {
-                env[ei.key] = { type: "secret_ref", secretId: newSecretId };
-              } else {
-                warnings.push(`Env key "${ei.key}" for agent ${manifestAgent.slug} references secret "${ei.secretName}" which was not included in this package. Re-add manually.`);
-              }
-            } else if (ei.kind === "secret" && !ei.secretName) {
-              warnings.push(`Env key "${ei.key}" for agent ${manifestAgent.slug} could not be reconstructed (sensitive binding without secret reference). Re-add manually.`);
-            } else if (ei.kind === "plain" && ei.defaultValue !== null) {
-              env[ei.key] = { type: "plain", value: ei.defaultValue };
-            }
-          }
-          if (Object.keys(env).length > 0) {
-            normalizedAdapter.adapterConfig.env = await secrets.normalizeEnvBindingsForPersistence(targetCompany.id, env as any, { strictMode: strictSecretsMode });
-          }
-        }
-
         const patch = {
           name: planAgent.plannedName,
           role: manifestAgent.role,
@@ -4363,9 +4230,10 @@ export function companyPortabilityService(db: Db, storage?: StorageService) {
           continue;
         }
 
+        const createdStatus = "idle";
         let created = await agents.create(targetCompany.id, {
           ...patch,
-          status: "idle",
+          status: createdStatus,
         });
         await access.ensureMembership(targetCompany.id, "agent", created.id, "member", "active");
         await access.setPrincipalPermission(
@@ -4385,7 +4253,7 @@ export function companyPortabilityService(db: Db, storage?: StorageService) {
         } catch (err) {
           warnings.push(`Failed to materialize instructions bundle for ${manifestAgent.slug}: ${err instanceof Error ? err.message : String(err)}`);
         }
-        agentStatusById.set(created.id, created.status ?? "idle");
+        agentStatusById.set(created.id, created.status ?? createdStatus);
         importedSlugToAgentId.set(planAgent.slug, created.id);
         existingSlugToAgentId.set(normalizeAgentUrlKey(created.name) ?? created.id, created.id);
         resultAgents.push({
@@ -4434,26 +4302,6 @@ export function companyPortabilityService(db: Db, storage?: StorageService) {
             ?? null
           : null;
         const projectWorkspaceIdByKey = new Map<string, string>();
-        // Build project env from manifest.envInputs filtered by this project
-        const projectEnvInputs = (sourceManifest.envInputs ?? []).filter((e) => e.projectSlug === planProject.slug);
-        const reconstructedProjectEnv: Record<string, unknown> = {};
-        for (const ei of projectEnvInputs) {
-          if (ei.kind === "secret" && ei.secretName) {
-            const newSecretId = secretNameToId.get(ei.secretName);
-            if (newSecretId) {
-              reconstructedProjectEnv[ei.key] = { type: "secret_ref", secretId: newSecretId };
-            } else {
-              warnings.push(`Env key "${ei.key}" for project ${planProject.slug} references secret "${ei.secretName}" which was not included in this package. Re-add manually.`);
-            }
-          } else if (ei.kind === "secret" && !ei.secretName) {
-            warnings.push(`Env key "${ei.key}" for project ${planProject.slug} could not be reconstructed (sensitive binding without secret reference). Re-add manually.`);
-          } else if (ei.kind === "plain" && ei.defaultValue !== null) {
-            reconstructedProjectEnv[ei.key] = { type: "plain", value: ei.defaultValue };
-          }
-        }
-        const projectEnvConfig = Object.keys(reconstructedProjectEnv).length > 0
-          ? await secrets.normalizeEnvBindingsForPersistence(targetCompany.id, reconstructedProjectEnv as any, { strictMode: strictSecretsMode })
-          : null;
         const projectPatch = {
           name: planProject.plannedName,
           description: manifestProject.description,
@@ -4463,7 +4311,7 @@ export function companyPortabilityService(db: Db, storage?: StorageService) {
           status: manifestProject.status && PROJECT_STATUSES.includes(manifestProject.status as any)
             ? manifestProject.status as typeof PROJECT_STATUSES[number]
             : "backlog",
-          env: projectEnvConfig ?? undefined,
+          env: manifestProject.env,
           executionWorkspacePolicy: stripPortableProjectExecutionWorkspaceRefs(manifestProject.executionWorkspacePolicy),
         };
 
@@ -4542,91 +4390,6 @@ export function companyPortabilityService(db: Db, storage?: StorageService) {
       }
     }
 
-    // Remap secret_ref bindings in imported agent/project records to target company secret IDs
-    for (const envInput of sourceManifest.envInputs ?? []) {
-      if (envInput.kind !== "secret" || !envInput.secretName) continue;
-      const newSecretId = secretNameToId.get(envInput.secretName);
-      if (!newSecretId) {
-        // secret wasn't created (decryption failure or error) — it's already a placeholder in the env
-        continue;
-      }
-      if (envInput.agentSlug) {
-        const agentId = importedSlugToAgentId.get(envInput.agentSlug);
-        if (agentId) {
-          const agent = await agents.getById(agentId);
-          if (agent) {
-            const adapterConfig = agent.adapterConfig as Record<string, unknown>;
-            const env = adapterConfig.env as Record<string, unknown> | undefined;
-            let mutated = false;
-            if (env && typeof env[envInput.key] === "object" && env[envInput.key] !== null) {
-              const binding = env[envInput.key] as Record<string, unknown>;
-              if (binding.type === "secret_ref" && binding.secretId !== newSecretId) {
-                binding.secretId = newSecretId;
-                mutated = true;
-              }
-            }
-            if (mutated) await agents.update(agentId, { adapterConfig });
-          }
-        }
-      } else if (envInput.projectSlug) {
-        const projectId = importedSlugToProjectId.get(envInput.projectSlug);
-        if (projectId) {
-          const project = await projects.getById(projectId);
-          if (project && project.env && typeof project.env === "object") {
-            const env = project.env as Record<string, unknown>;
-            let mutated = false;
-            if (typeof env[envInput.key] === "object" && env[envInput.key] !== null) {
-              const binding = env[envInput.key] as Record<string, unknown>;
-              if (binding.type === "secret_ref" && binding.secretId !== newSecretId) {
-                binding.secretId = newSecretId;
-                mutated = true;
-              }
-            }
-            if (mutated) await projects.update(projectId, { env: env as import("@paperclipai/shared").AgentEnvConfig });
-          }
-        }
-      }
-    }
-
-    // Note: the legacy secret remapping below is kept as a safety net for
-    // agents/projects that were created/updated before this code existed.
-    // It can be removed once the inline reconstruction above is stable.
-    // Reconstruct plain env bindings and fill in missing env keys on imported agents/projects
-    for (const envInput of sourceManifest.envInputs ?? []) {
-      if (envInput.kind !== "plain" && !(envInput.kind === "secret" && !envInput.secretName)) continue;
-      if (!envInput.defaultValue && envInput.kind === "plain") continue;
-
-      if (envInput.agentSlug) {
-        const agentId = importedSlugToAgentId.get(envInput.agentSlug);
-        if (!agentId) continue;
-        const agent = await agents.getById(agentId);
-        if (!agent) continue;
-        const adapterConfig = agent.adapterConfig as Record<string, unknown>;
-        const env = (adapterConfig.env as Record<string, unknown>) ?? {};
-        let mutated = false;
-        if (!env[envInput.key] && envInput.kind === "plain") {
-          env[envInput.key] = { type: "plain", value: envInput.defaultValue ?? "" };
-          mutated = true;
-        }
-        if (mutated) {
-          adapterConfig.env = env;
-          await agents.update(agentId, { adapterConfig });
-        }
-      } else if (envInput.projectSlug) {
-        const projectId = importedSlugToProjectId.get(envInput.projectSlug);
-        if (!projectId) continue;
-        const project = await projects.getById(projectId);
-        if (!project) continue;
-        const env = (project.env as Record<string, unknown>) ?? {};
-        let mutated = false;
-        if (!env[envInput.key] && envInput.kind === "plain") {
-          env[envInput.key] = { type: "plain", value: envInput.defaultValue ?? "" };
-          mutated = true;
-        }
-        if (mutated) await projects.update(projectId, { env: env as import("@paperclipai/shared").AgentEnvConfig });
-      }
-    }
-
     if (include.issues) {
       const routines = routineService(db);
       for (const manifestIssue of sourceManifest.issues) {

skills/paperclip-dev/SKILL.md

@@ -1,267 +0,0 @@
----
-name: paperclip-dev
-required: false
-description: >
-  Develop and operate a local Paperclip instance — start and stop servers,
-  pull updates from master, run builds and tests, manage worktrees, back up
-  databases, and diagnose problems. Use whenever you need to work on the
-  Paperclip codebase itself or keep a running instance healthy.
----
-
-# Paperclip Dev
-
-This skill covers the day-to-day workflows for developing and operating a local Paperclip instance. It assumes you are working inside the Paperclip repo checkout with `origin` pointing to `git@github.com:paperclipai/paperclip.git`.
-
-> **OPEN SOURCE HYGIENE:** This repository is public-facing. Treat anything you push to `origin` as publishable. Never commit or push secrets, API keys, tokens, private logs, PII, customer data, or machine-local configuration that should stay private. Keep git history tidy as well: avoid pushing throwaway branches, noisy checkpoint commits, or speculative work that does not need to be shared upstream.
-
-> **MANDATORY:** Before running any CLI command, building, testing, or managing worktrees, you MUST read `doc/DEVELOPING.md` in the Paperclip repo. It is the canonical reference for all `paperclipai` CLI commands, their options, build/test workflows, database operations, worktree management, and diagnostics. Do NOT guess at flags or options — read the doc first.
-
-## Quick Command Reference
-
-These are the most common commands. For full option tables and details, see `doc/DEVELOPING.md`.
-
-| Task | Command |
-|------|---------|
-| Start server (first time or normal) | `npx paperclipai run` |
-| Dev mode with hot reload | `pnpm dev` |
-| Stop dev server | `pnpm dev:stop` |
-| Build | `pnpm build` |
-| Type-check | `pnpm typecheck` |
-| Run tests | `pnpm test` |
-| Run migrations | `pnpm db:migrate` |
-| Regenerate Drizzle client | `pnpm db:generate` |
-| Back up database | `npx paperclipai db:backup` |
-| Health check | `npx paperclipai doctor --repair` |
-| Print env vars | `npx paperclipai env` |
-| Trigger agent heartbeat | `npx paperclipai heartbeat run --agent-id <id>` |
-| Install agent skills locally | `npx paperclipai agent local-cli <agent> --company-id <id>` |
-
-## Pulling from Master
-
-```bash
-git fetch origin && git pull origin master
-pnpm install && pnpm build
-```
-
-If schema changes landed, also run `pnpm db:generate && pnpm db:migrate`.
-
-## Worktrees
-
-Paperclip worktrees combine git worktrees with isolated Paperclip instances — each gets its own database, server port, and environment seeded from the primary instance.
-
-> **MANDATORY:** Before creating or managing worktrees, you MUST read the "Worktree-local Instances" and "Worktree CLI Reference" sections in `doc/DEVELOPING.md`. That is the canonical reference for all worktree commands, their options, seed modes, and environment variables.
-
-### When to Use Worktrees
-
-- Starting a feature branch that needs its own Paperclip environment
-- Running parallel agent work without cross-contaminating the primary instance
-- Testing Paperclip changes in isolation before merging
-
-### Command Overview
-
-The CLI has two tiers (see `doc/DEVELOPING.md` for full option tables):
-
-| Command | Purpose |
-|---------|---------|
-| `worktree:make <name>` | Create worktree + isolated instance in one step |
-| `worktree:list` | List worktrees and their Paperclip status |
-| `worktree:merge-history` | Preview/import issue history between worktrees |
-| `worktree:cleanup <name>` | Remove worktree, branch, and instance data |
-| `worktree init` | Bootstrap instance inside existing worktree |
-| `worktree env` | Print shell exports for worktree instance |
-| `worktree reseed` | Refresh worktree DB from another instance |
-| `worktree repair` | Fix broken/missing worktree instance metadata |
-
-### Typical Workflow
-
-```bash
-# 1. Create a worktree for a feature
-npx paperclipai worktree:make my-feature --start-point origin/main
-
-# 2. Move into the worktree (path printed by worktree:make) and source the environment
-cd <worktree-path>
-eval "$(npx paperclipai worktree env)"
-
-# 3. Start the isolated Paperclip server
-npx paperclipai run
-
-# 4. Do your work
-
-# 5. When done, merge history back if needed
-npx paperclipai worktree:merge-history --from paperclip-my-feature --to current --apply
-
-# 6. Clean up
-npx paperclipai worktree:cleanup my-feature
-```
-
-## Forks — Prefer Pushing to a User Fork
-
-If the user has a personal fork of `paperclipai/paperclip` configured as a git remote, push your feature branches to **that fork** instead of creating branches on the main repo. This keeps the upstream branch list clean and matches the standard open-source contribution flow.
-
-### Detect a fork remote
-
-Before pushing or creating a PR, list remotes and check for one that points at a non-`paperclipai` GitHub fork:
-
-```bash
-git remote -v
-```
-
-Treat any remote whose URL points to `github.com:<user>/paperclip` (or `github.com/<user>/paperclip.git`) as the user's fork. Common names are `fork`, `<username>`, or `myfork`. The remote named `origin` or `upstream` that points at `paperclipai/paperclip` is the canonical upstream — do not push feature branches there if a fork exists.
-
-### Pushing to the fork
-
-```bash
-# Push the current branch to the user's fork and set upstream
-git push -u <fork-remote> HEAD
-```
-
-Then create the PR from the fork branch:
-
-```bash
-gh pr create --repo paperclipai/paperclip --head <fork-owner>:<branch-name> ...
-```
-
-`gh pr create` usually figures out the head ref automatically when run from a branch tracking the fork; the explicit `--head <owner>:<branch>` form is the reliable fallback when it does not.
-
-### When no fork exists
-
-If `git remote -v` shows only `paperclipai/paperclip` remotes (no user fork), fall back to pushing branches to `origin` as before. Do NOT create a fork on the user's behalf — ask first.
-
-### Keeping the fork up to date
-
-The canonical remote that points at `paperclipai/paperclip` may be named `origin` **or** `upstream` depending on how the user set up the repo. Detect it the same way as in the "Detect a fork remote" step, then fetch and push from/with that remote so the sync works under either convention:
-
-```bash
-UPSTREAM_REMOTE=$(git remote -v | awk '/paperclipai\/paperclip.*\(fetch\)/{print $1; exit}')
-git fetch "$UPSTREAM_REMOTE"
-git push <fork-remote> "${UPSTREAM_REMOTE}/master:master"
-```
-
-## Pull Requests
-
-> **MANDATORY PRE-FLIGHT:** Before creating ANY pull request, you MUST read the canonical source files listed below. Do NOT run `gh pr create` until you have read these files and verified your PR body matches every required section.
-
-### Step 1 — Read the canonical files
-
-You MUST read all three of these files before creating a PR:
-
-1. **`.github/PULL_REQUEST_TEMPLATE.md`** — the required PR body structure
-2. **`CONTRIBUTING.md`** — contribution conventions, PR requirements, and thinking-path examples
-3. **`.github/workflows/pr.yml`** — CI checks that gate merge
-
-### Step 2 — Validate your PR body against this checklist
-
-After reading the template, verify your `--body` includes every one of these sections (names must match exactly):
-
-- [ ] `## Thinking Path` — blockquote style, 5-8 reasoning steps
-- [ ] `## What Changed` — bullet list of concrete changes
-- [ ] `## Verification` — how a reviewer confirms this works
-- [ ] `## Risks` — what could go wrong
-- [ ] `## Model Used` — provider, model ID, version, capabilities
-- [ ] `## Checklist` — copied from the template, items checked off
-
-If any section is missing or empty, do NOT submit the PR. Go back and fill it in.
-
-### Step 3 — Create the PR
-
-Only after completing Steps 1 and 2, run `gh pr create`. Use the template contents as the structure for `--body` — do not write a freeform summary.
-
-## Hard Rules — Do NOT Bypass
-
-These rules exist because agents have caused real damage by improvising around CLI failures. Follow them exactly.
-
-1. **CLI is the only interface to worktrees and databases.** All worktree and database operations MUST go through `npx paperclipai` / `pnpm paperclipai` commands. You MUST NOT:
-   - Run `pg_dump`, `pg_restore`, `psql`, `createdb`, `dropdb`, or any raw postgres commands
-   - Manually set `DATABASE_URL` to point a worktree server at another instance's database
-   - Run `rm -rf` on any `.paperclip/`, `.paperclip-worktrees/`, or `db/` directory
-   - Directly manipulate embedded postgres data directories
-   - Kill postgres processes by PID
-
-2. **If a CLI command fails, stop and report.** Do NOT attempt workarounds. If `worktree:make`, `worktree reseed`, `worktree init`, `worktree:cleanup`, or any other `paperclipai` command fails:
-   - Report the exact error message in your task comment
-   - Set the task to `blocked`
-   - Suggest running `npx paperclipai doctor --repair` or recreating the worktree from scratch
-   - Do NOT try to manually replicate what the CLI does
-
-3. **Never share databases between instances.** Each worktree instance gets its own isolated database. Never override `DATABASE_URL` to point one instance at another's database. This destroys isolation and can corrupt production data.
-
-4. **Starting a dev server in a worktree requires setup first.** The correct sequence is:
-   ```bash
-   # If the worktree already exists but has no running instance:
-   cd <worktree-path>
-   eval "$(npx paperclipai worktree env)"
-   pnpm install && pnpm build
-   npx paperclipai run          # or pnpm dev
-
-   # If the worktree needs a fresh database:
-   npx paperclipai worktree reseed --seed-mode full
-
-   # If the worktree is broken beyond repair:
-   npx paperclipai worktree:cleanup <name>
-   npx paperclipai worktree:make <name> --seed-mode full
-   ```
-   If any step fails, follow rule 2 — stop and report.
-
-5. **Seeding is a CLI operation.** When asked to seed a worktree database from the main instance, use `worktree reseed` or recreate with `worktree:make --seed-mode full`. Read `doc/DEVELOPING.md` for the full option tables. Never attempt manual database copying.
-
-## Persistent Dev Servers (for Manual Testing)
-
-When an agent needs to start a dev server that outlives the current heartbeat — for example, so a human or QA agent can manually test against it — the server process **must** be launched in a detached session. A process started directly from a heartbeat shell is killed when the heartbeat exits.
-
-### Use `tmux` for persistent servers
-
-```bash
-# 1. cd into the worktree (or main repo) and source the environment
-cd <worktree-path>
-eval "$(npx paperclipai worktree env)"   # skip if using the primary instance
-
-# 2. Start the dev server in a named, detached tmux session
-tmux new-session -d -s <session-name> 'pnpm dev'
-
-# Example with a descriptive name:
-tmux new-session -d -s auth-fix-3102 'pnpm dev'
-```
-
-### Managing the session
-
-| Task | Command |
-|------|---------|
-| Check if the session is alive | `tmux has-session -t <session-name> 2>/dev/null && echo running` |
-| View server output | `tmux capture-pane -t <session-name> -p` |
-| Kill the session | `tmux kill-session -t <session-name>` |
-| List all tmux sessions | `tmux list-sessions` |
-
-### Verifying the server is reachable
-
-After launching, confirm the port is listening before reporting success:
-
-```bash
-# Wait briefly for startup, then verify
-sleep 3
-curl -sf http://127.0.0.1:<port>/api/health && echo "Server is up"
-lsof -nP -iTCP:<port> -sTCP:LISTEN
-```
-
-### Key rules
-
-1. **Always use `tmux` (or equivalent)** when a dev server needs to stay running after the heartbeat ends. A server started directly from the agent shell will die when the heartbeat exits, even if it appeared healthy moments before.
-2. **Name the session descriptively** — include the worktree name and port (e.g., `auth-fix-3102`).
-3. **Verify the server is listening** before reporting the URL to anyone.
-4. **Do not use `nohup` or `&` alone** — these are unreliable for agent shells that may have their entire process group killed.
-5. **Clean up when done** — kill the tmux session when the testing is complete.
-
-## Common Mistakes
-
-| Mistake | Fix |
-|---------|-----|
-| Server won't start | Run `npx paperclipai doctor --repair` to diagnose and auto-fix |
-| Forgetting to source worktree env | Run `eval "$(npx paperclipai worktree env)"` after cd-ing into the worktree |
-| Stale dependencies after pull | Run `pnpm install && pnpm build` after pulling |
-| Schema out of date after pull | Run `pnpm db:generate && pnpm db:migrate` |
-| Reseeding while target DB is running | Stop the target server first, or use `--allow-live-target` |
-| Cleaning up with unmerged commits | Merge or push first, or use `--force` if intentionally discarding |
-| Running agents against wrong instance | Verify `PAPERCLIP_API_URL` points to the correct port |
-| CLI command fails | Do NOT work around it — report the error and block (see Hard Rules above) |
-| Agent tries manual postgres operations | NEVER do this — all DB ops go through the CLI (see Hard Rules above) |
-| Dev server dies between heartbeats | Launch in a detached `tmux` session — see "Persistent Dev Servers" above |
-| Pushed feature branch to `paperclipai/paperclip` when a fork exists | Push to the user's fork remote instead — see "Forks" above |

ui/src/pages/CompanyExport.tsx

@@ -17,15 +17,6 @@ import { authApi } from "../api/auth";
 import { companiesApi } from "../api/companies";
 import { projectsApi } from "../api/projects";
 import { Button } from "@/components/ui/button";
-import { ToggleSwitch } from "@/components/ui/toggle-switch";
-import {
-  Dialog,
-  DialogContent,
-  DialogDescription,
-  DialogFooter,
-  DialogHeader,
-  DialogTitle,
-} from "@/components/ui/dialog";
 import { EmptyState } from "../components/EmptyState";
 import { PageSkeleton } from "../components/PageSkeleton";
 import { MarkdownBody } from "../components/MarkdownBody";
@@ -612,8 +603,6 @@ export function CompanyExport() {
   const [expandedDirs, setExpandedDirs] = useState<Set<string>>(new Set());
   const [checkedFiles, setCheckedFiles] = useState<Set<string>>(new Set());
   const [treeSearch, setTreeSearch] = useState("");
-  const [includeSecrets, setIncludeSecrets] = useState(false);
-  const [secretsConfirmOpen, setSecretsConfirmOpen] = useState(false);
   const [taskLimit, setTaskLimit] = useState(TASKS_PAGE_SIZE);
   const savedExpandedRef = useRef<Set<string> | null>(null);
   const initialFileFromUrl = useRef(filePathFromLocation(location.pathname));
@@ -742,7 +731,6 @@ export function CompanyExport() {
         include: { company: true, agents: true, projects: true, issues: true },
         selectedFiles: Array.from(checkedFiles).sort(),
         sidebarOrder,
-        includeSecrets,
       }),
     onSuccess: (result) => {
       const resultCheckedFiles = new Set(Object.keys(result.files));
@@ -957,11 +945,6 @@ export function CompanyExport() {
                 {warnings.length} warning{warnings.length === 1 ? "" : "s"}
               </span>
             )}
-            {includeSecrets && (
-              <span className="rounded-md border border-amber-500/30 bg-amber-500/5 px-2 py-0.5 text-xs text-amber-500">
-                Secrets included
-              </span>
-            )}
           </div>
           <Button
             size="sm"
@@ -991,29 +974,6 @@ export function CompanyExport() {
           <div className="border-b border-border px-4 py-3 shrink-0">
             <h2 className="text-base font-semibold">Package files</h2>
           </div>
-          <div className="border-b border-border px-4 py-2.5 shrink-0">
-            <div className="flex items-center gap-2 text-sm">
-              <ToggleSwitch
-                checked={includeSecrets}
-                onCheckedChange={(checked) => {
-                  if (checked) {
-                    setSecretsConfirmOpen(true);
-                  } else {
-                    setIncludeSecrets(false);
-                  }
-                }}
-              />
-              <span className="cursor-pointer text-muted-foreground hover:text-foreground transition-colors" onClick={() => {
-                if (includeSecrets) {
-                  setIncludeSecrets(false);
-                } else {
-                  setSecretsConfirmOpen(true);
-                }
-              }}>
-                Include secrets
-              </span>
-            </div>
-          </div>
           <div className="border-b border-border px-3 py-2 shrink-0">
             <div className="flex items-center gap-2 rounded-md border border-border px-2 py-1">
               <Search className="h-3.5 w-3.5 text-muted-foreground shrink-0" />
@@ -1054,26 +1014,6 @@ export function CompanyExport() {
           <ExportPreviewPane selectedFile={selectedFile} content={previewContent} allFiles={effectiveFiles} onSkillClick={handleSkillClick} />
         </div>
       </div>
-
-      {/* Secrets confirmation dialog */}
-      <Dialog open={secretsConfirmOpen} onOpenChange={setSecretsConfirmOpen}>
-        <DialogContent className="sm:max-w-md">
-          <DialogHeader>
-            <DialogTitle>Include secrets?</DialogTitle>
-            <DialogDescription>
-              Secrets will be exported as plaintext in the package file. Handle the exported package with care.
-            </DialogDescription>
-          </DialogHeader>
-          <DialogFooter>
-            <Button variant="ghost" onClick={() => setSecretsConfirmOpen(false)}>
-              Cancel
-            </Button>
-            <Button variant="destructive" onClick={() => { setIncludeSecrets(true); setSecretsConfirmOpen(false); }}>
-              Include secrets
-            </Button>
-          </DialogFooter>
-        </DialogContent>
-      </Dialog>
     </div>
   );
 }

ui/src/pages/CompanyImport.tsx

@@ -866,13 +866,6 @@ export function CompanyImport() {
         title: "Import complete",
         body: `${result.company.name}: ${result.agents.length} agent${result.agents.length === 1 ? "" : "s"} processed.`,
       });
-      if (result.warnings.some((w) => w.includes("could not be decrypted") || w.toLowerCase().includes("failed to create secret"))) {
-        pushToast({
-          tone: "warn",
-          title: "Secrets import warning",
-          body: "Some secrets could not be decrypted. Review warnings and recreate manually.",
-        });
-      }
       // Force a fresh dashboard load so newly imported agents are immediately visible.
       window.location.assign(`/${importedCompany.issuePrefix}/dashboard`);
     },
@@ -1316,18 +1309,6 @@ export function CompanyImport() {
             </div>
           )}
 
-          {/* Secrets info */}
-          {importPreview.manifest.secrets && importPreview.manifest.secrets.length > 0 && (
-            <div className="mx-5 mt-3 rounded-md border border-amber-500/30 bg-amber-500/5 px-4 py-3">
-              <div className="text-xs font-medium text-amber-500 mb-1">Secrets to import</div>
-              {importPreview.manifest.secrets.map((s) => (
-                <div key={s.name} className="text-xs text-amber-500">
-                  {s.name}{s.provider !== "local_encrypted" ? ` (${s.provider})` : ""}
-                </div>
-              ))}
-            </div>
-          )}
-
           {/* Errors */}
           {importPreview.errors.length > 0 && (
             <div className="mx-5 mt-3 rounded-md border border-destructive/30 bg-destructive/5 px-4 py-3">