91dace2e7c
Address three confirmed review findings: - Windows were sample-count based, so "7-day" and "last night" claims could be built from weeks-old data. All signals now use calendar windows anchored on a reference date (the tool passes today); stale metrics report "no recent data" and the verdict is withheld instead of presenting old samples as current. - rhr_signal's `or vals[:-1]` fallback compared the recent week against itself at the sample minimum, reading a uniformly-ill week as "ok". The baseline is now disjoint by construction and insufficient baselines return nodata. - The HRV SWC band had no floor, so a near-constant baseline flagged trivial fluctuations (50->49) as red "parasympathetic suppression". SWC now floors at 0.05 ln units (~5% rMSSD, on the order of normal day-to-day variation). Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01NGzHtDvJur9U7ysgRKRUTN
331 lines
12 KiB
Python
331 lines
12 KiB
Python
"""
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Training-readiness computation for Intervals.icu wellness data.
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Pure functions (no I/O) so they can be unit-tested on fixtures. The HRV method
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follows Plews & Laursen: a rolling mean of ``ln(rMSSD)`` over the last 7 calendar
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days compared to a baseline from the preceding ~30 days, with a "normal" band of
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baseline mean +/- the smallest worthwhile change (SWC = 0.5 x baseline SD, with a
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floor so a near-constant baseline can't produce a zero-width band). Resting HR,
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sleep and subjective inputs are each compared to their own recent baseline.
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All windows are **calendar-based**, anchored on ``reference_date`` (callers should
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pass today): a metric whose samples are older than the window reports "no recent
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data" instead of silently treating stale samples as current. Nothing is
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fabricated: a metric with too little data in its window reports "no data" rather
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than defaulting, and the overall verdict is withheld (not guessed) when the
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objective signals are too sparse to be meaningful. Subjective fields use the
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conventional Intervals.icu direction (soreness/fatigue/stress/injury: higher is
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worse; mood/motivation: higher is better) and only ever contribute a soft
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warning, never a hard alert.
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"""
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from __future__ import annotations
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import math
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import statistics
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from datetime import date, timedelta
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from typing import Any
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_RECENT_DAYS = 7
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_BASELINE_DAYS = 30
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_MIN_HRV_RECENT = 4 # samples needed inside the 7-day window
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_MIN_HRV_BASELINE = 7
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_MIN_RHR_RECENT = 4
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_MIN_RHR_BASELINE = 5
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_MIN_SLEEP_BASELINE = 5
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_MIN_SUBJ_BASELINE = 5
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_SUBJ_LATEST_MAX_AGE = 3 # days; older subjective entries aren't "current" feelings
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# Floor for the HRV smallest-worthwhile-change band, in ln(rMSSD) units. A
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# near-constant baseline (coarsely-rounded device output, very steady athlete)
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# would otherwise give SWC ~= 0 and flag trivial fluctuations as alerts. 0.05 ln
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# units is ~5% in rMSSD — on the order of normal day-to-day variation.
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_SWC_FLOOR = 0.05
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_SUBJ_WORSE_HIGH = ("soreness", "fatigue", "stress", "injury")
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_SUBJ_WORSE_LOW = ("motivation", "mood")
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def _parse_date(value: Any) -> date | None:
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try:
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return date.fromisoformat(str(value)[:10])
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except (ValueError, TypeError):
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return None
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def _dated_series(
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records: list[dict[str, Any]], key: str, positive: bool = False
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) -> list[tuple[date, float]]:
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"""Date-sorted ``(date, value)`` pairs for ``key``; undated/non-numeric skipped."""
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out: list[tuple[date, float]] = []
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for r in records:
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if not isinstance(r, dict):
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continue
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d = _parse_date(r.get("id") or r.get("date"))
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v = r.get(key)
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if d is None or not isinstance(v, (int, float)) or isinstance(v, bool):
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continue
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if positive and v <= 0:
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continue
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out.append((d, float(v)))
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out.sort(key=lambda p: p[0])
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return out
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def _windows(
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pairs: list[tuple[date, float]], ref: date
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) -> tuple[list[float], list[float]]:
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"""Split values into recent (last 7 calendar days) and baseline (30 before that)."""
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recent_start = ref - timedelta(days=_RECENT_DAYS)
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baseline_start = recent_start - timedelta(days=_BASELINE_DAYS)
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recent = [v for d, v in pairs if recent_start < d <= ref]
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baseline = [v for d, v in pairs if baseline_start < d <= recent_start]
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return recent, baseline
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def _newest_date(records: list[dict[str, Any]]) -> date | None:
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dates = [
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d
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for d in (_parse_date(r.get("id") or r.get("date")) for r in records if isinstance(r, dict))
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if d is not None
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]
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return max(dates) if dates else None
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def _resolve_ref(records: list[dict[str, Any]], reference_date: str | None) -> date | None:
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return _parse_date(reference_date) if reference_date else _newest_date(records)
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def hrv_signal(records: list[dict[str, Any]], reference_date: str | None = None) -> dict[str, Any]:
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"""HRV readiness via 7-day rolling lnRMSSD vs baseline band (mean +/- SWC)."""
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pairs = _dated_series(records, "hrv", positive=True)
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ref = _resolve_ref(records, reference_date)
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if ref is None or not pairs:
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return {"name": "HRV", "level": "nodata", "detail": "no HRV data"}
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recent_vals, baseline_vals = _windows(pairs, ref)
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if len(recent_vals) < _MIN_HRV_RECENT:
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return {
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"name": "HRV",
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"level": "nodata",
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"detail": f"only {len(recent_vals)} HRV sample(s) in the last {_RECENT_DAYS} days",
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}
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if len(baseline_vals) < _MIN_HRV_BASELINE:
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return {
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"name": "HRV",
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"level": "nodata",
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"detail": f"only {len(baseline_vals)} baseline day(s) — need >= {_MIN_HRV_BASELINE}",
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}
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recent_mean = statistics.mean(math.log(v) for v in recent_vals)
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ln_base = [math.log(v) for v in baseline_vals]
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base_mean = statistics.mean(ln_base)
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swc = max(0.5 * statistics.pstdev(ln_base), _SWC_FLOOR)
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if recent_mean < base_mean - swc:
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return {
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"name": "HRV",
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"level": "alert",
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"detail": "7-day lnHRV below baseline band — parasympathetic suppression",
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}
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if recent_mean > base_mean + swc:
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return {
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"name": "HRV",
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"level": "warn",
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"detail": "7-day lnHRV above baseline band — super-compensation, "
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"or saturation if resting HR is also elevated",
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}
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return {"name": "HRV", "level": "ok", "detail": "7-day lnHRV within normal band"}
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def rhr_signal(records: list[dict[str, Any]], reference_date: str | None = None) -> dict[str, Any]:
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"""Resting-HR readiness: 7-day mean vs a disjoint 30-day baseline, flag if >5% above."""
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pairs = _dated_series(records, "restingHR", positive=True)
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ref = _resolve_ref(records, reference_date)
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if ref is None or not pairs:
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return {"name": "Resting HR", "level": "nodata", "detail": "no resting-HR data"}
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recent_vals, baseline_vals = _windows(pairs, ref)
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if len(recent_vals) < _MIN_RHR_RECENT:
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return {
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"name": "Resting HR",
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"level": "nodata",
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"detail": f"only {len(recent_vals)} RHR sample(s) in the last {_RECENT_DAYS} days",
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}
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if len(baseline_vals) < _MIN_RHR_BASELINE:
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return {
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"name": "Resting HR",
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"level": "nodata",
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"detail": f"only {len(baseline_vals)} baseline day(s) of RHR — need >= {_MIN_RHR_BASELINE}",
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}
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recent = statistics.mean(recent_vals)
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base = statistics.mean(baseline_vals)
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if base > 0 and (recent - base) / base > 0.05:
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return {
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"name": "Resting HR",
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"level": "warn",
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"detail": f"7-day RHR {recent:.0f} is >5% above baseline {base:.0f}",
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}
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return {
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"name": "Resting HR",
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"level": "ok",
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"detail": f"7-day RHR {recent:.0f} near baseline {base:.0f}",
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}
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def sleep_signal(records: list[dict[str, Any]], reference_date: str | None = None) -> dict[str, Any]:
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"""Sleep readiness: last night (dated within a day of reference) vs baseline mean."""
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pairs = _dated_series(records, "sleepSecs", positive=True)
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ref = _resolve_ref(records, reference_date)
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if ref is None or not pairs:
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return {"name": "Sleep", "level": "nodata", "detail": "no sleep data"}
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last_date, last_secs = pairs[-1]
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if (ref - last_date).days > 1:
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return {
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"name": "Sleep",
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"level": "nodata",
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"detail": f"no sleep logged since {last_date.isoformat()}",
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}
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baseline = [
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v / 3600
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for d, v in pairs
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if d != last_date and ref - timedelta(days=_BASELINE_DAYS) < d <= ref
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]
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if len(baseline) < _MIN_SLEEP_BASELINE:
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return {"name": "Sleep", "level": "nodata", "detail": "not enough sleep data"}
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last = last_secs / 3600
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mean = statistics.mean(baseline)
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if mean > 0 and last < 0.85 * mean:
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return {
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"name": "Sleep",
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"level": "warn",
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"detail": f"last night {last:.1f}h below baseline {mean:.1f}h",
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}
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return {
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"name": "Sleep",
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"level": "ok",
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"detail": f"last night {last:.1f}h near baseline {mean:.1f}h",
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}
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def subjective_signals(
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records: list[dict[str, Any]], reference_date: str | None = None
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) -> list[dict[str, Any]]:
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"""Soft warnings when a *current* subjective field has moved off baseline for the worse."""
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signals: list[dict[str, Any]] = []
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ref = _resolve_ref(records, reference_date)
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if ref is None:
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return signals
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fields = [(f, True) for f in _SUBJ_WORSE_HIGH] + [(f, False) for f in _SUBJ_WORSE_LOW]
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for field, worse_high in fields:
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pairs = _dated_series(records, field)
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if not pairs:
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continue
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latest_date, latest = pairs[-1]
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if (ref - latest_date).days > _SUBJ_LATEST_MAX_AGE:
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continue # stale entries aren't current feelings
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baseline = [
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v
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for d, v in pairs
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if d != latest_date and ref - timedelta(days=_BASELINE_DAYS) < d <= ref
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]
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if len(baseline) < _MIN_SUBJ_BASELINE:
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continue
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mean = statistics.mean(baseline)
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sd = statistics.pstdev(baseline) if len(baseline) > 1 else 0.0
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threshold = max(sd, 0.5) # require a meaningful move, not noise
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worse = (latest - mean > threshold) if worse_high else (mean - latest > threshold)
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if worse:
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direction = "elevated" if worse_high else "low"
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signals.append(
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{
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"name": field.capitalize(),
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"level": "warn",
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"detail": f"{field} {direction} vs baseline ({latest:g} vs {mean:.1f})",
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}
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)
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return signals
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def form_context(records: list[dict[str, Any]]) -> dict[str, Any] | None:
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"""Latest Form (TSB = CTL - ATL) if both components are present."""
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dated = sorted(
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[r for r in records if isinstance(r, dict)],
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key=lambda r: str(r.get("id") or r.get("date") or ""),
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)
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if not dated:
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return None
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latest = dated[-1]
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ctl, atl = latest.get("ctl"), latest.get("atl")
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if isinstance(ctl, (int, float)) and isinstance(atl, (int, float)):
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return {"form": round(ctl - atl, 1), "ctl": ctl, "atl": atl}
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return None
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def assess_readiness(
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records: list[dict[str, Any]], reference_date: str | None = None
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) -> dict[str, Any]:
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"""Produce a structured readiness assessment from wellness records.
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``reference_date`` (YYYY-MM-DD) anchors the calendar windows — pass today so
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stale data reads as "no recent data" instead of masquerading as current. If
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omitted, the newest record's date is used (fixture-friendly, but blind to
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how old that record is).
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"""
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core = [
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hrv_signal(records, reference_date),
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rhr_signal(records, reference_date),
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sleep_signal(records, reference_date),
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]
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signals = core + subjective_signals(records, reference_date)
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alerts = [s for s in signals if s["level"] == "alert"]
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warns = [s for s in signals if s["level"] == "warn"]
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core_with_data = [s for s in core if s["level"] != "nodata"]
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if core[0]["level"] == "nodata" and len(core_with_data) < 2:
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verdict = "insufficient"
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elif alerts or len(warns) >= 3:
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verdict = "red"
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elif warns:
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verdict = "amber"
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else:
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verdict = "green"
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return {
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"verdict": verdict,
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"signals": signals,
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"form": form_context(records),
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"days": len(records),
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}
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_VERDICT_LABEL = {
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"green": "🟢 Ready — signals within normal range",
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"amber": "🟡 Caution — one or more signals off baseline",
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"red": "🔴 Compromised — strong or multiple negative signals",
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"insufficient": "⚪ Verdict withheld — not enough data to judge",
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}
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_LEVEL_ICON = {"ok": "✓", "warn": "!", "alert": "‼", "nodata": "·"}
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def render_readiness(assessment: dict[str, Any]) -> str:
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"""Render a readiness assessment into a plain-language report."""
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lines = [
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"Training Readiness:",
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"",
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_VERDICT_LABEL.get(assessment["verdict"], assessment["verdict"]),
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f"(based on {assessment['days']} day(s) of wellness data)",
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"",
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"Signals:",
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]
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for s in assessment["signals"]:
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lines.append(f" {_LEVEL_ICON.get(s['level'], '-')} {s['name']}: {s['detail']}")
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form = assessment["form"]
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if form:
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lines += ["", f"Form (TSB): {form['form']} (CTL {form['ctl']} / ATL {form['atl']})"]
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if assessment["verdict"] == "insufficient":
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lines += [
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"",
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"Log daily HRV (and resting HR) for ~2+ weeks to enable a readiness verdict.",
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]
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return "\n".join(lines)
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