## Thinking Path
> - Paperclip orchestrates AI agents for zero-human companies.
> - The heartbeat runtime, agent import path, and agent configuration
defaults determine whether work is dispatched safely and predictably.
> - Several accumulated fixes all touched agent execution recovery, wake
routing, import behavior, and runtime concurrency defaults.
> - Those changes need to land together so the heartbeat service and
agent creation defaults stay internally consistent.
> - This pull request groups the runtime/governance changes from the
split branch into one standalone branch.
> - The benefit is safer recovery for stranded runs, bounded high-volume
reads, imported-agent approval correctness, skill-template support, and
a clearer default concurrency policy.
## What Changed
- Fixed stranded continuation recovery so successful automatic retries
are requeued instead of incorrectly blocking the issue.
- Bounded high-volume issue/log reads across issue, heartbeat, agent,
project, and workspace paths.
- Fixed imported-agent approval and instruction-path permission
handling.
- Quarantined seeded worktree execution state during worktree
provisioning.
- Queued approval follow-up wakes and hardened SQL_ASCII heartbeat
output handling.
- Added reusable agent instruction templates for hiring flows.
- Set the default max concurrent agent runs to five and updated related
UI/tests/docs.
## Verification
- `pnpm install --frozen-lockfile`
- `pnpm exec vitest run server/src/__tests__/company-portability.test.ts
server/src/__tests__/heartbeat-process-recovery.test.ts
server/src/__tests__/heartbeat-comment-wake-batching.test.ts
server/src/__tests__/heartbeat-list.test.ts
server/src/__tests__/issues-service.test.ts
server/src/__tests__/agent-permissions-routes.test.ts
packages/adapter-utils/src/server-utils.test.ts
ui/src/lib/new-agent-runtime-config.test.ts`
- Split integration check: merged this branch first, followed by the
other [PAP-1614](/PAP/issues/PAP-1614) branches, with no merge
conflicts.
- Confirmed this branch does not include `pnpm-lock.yaml`.
## Risks
- Medium risk: touches heartbeat recovery, queueing, and issue list
bounds in central runtime paths.
- Imported-agent and concurrency default behavior changes may affect
existing automation that assumes one-at-a-time default runs.
- No database migrations are included.
> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.
## Model Used
- OpenAI Codex, GPT-5.4 tool-enabled coding model, agentic
code-editing/runtime with local shell and GitHub CLI access; exact
context window and reasoning mode are not exposed by the Paperclip
harness.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge
---------
Co-authored-by: Paperclip <noreply@paperclip.ing>
## Thinking Path
> - Paperclip is moving from a solo local operator model toward teams
supervising AI-agent companies.
> - Human access management and human-visible profile surfaces are part
of that multiple-user path.
> - The branch included related access cleanup, archived-member removal,
permission protection, and a user profile page.
> - These changes share company membership, user attribution, and
access-service behavior.
> - This pull request groups those human access/profile changes into one
standalone branch.
> - The benefit is safer member removal behavior and a first profile
surface for user work, activity, and cost attribution.
## What Changed
- Added archived company member removal support across shared contracts,
server routes/services, and UI.
- Protected company member removal with stricter permission checks and
tests.
- Added company user profile API, shared types, route wiring, client
API, route, and UI page.
- Simplified the user profile page visual design to a neutral
typography-led layout.
## Verification
- `pnpm install --frozen-lockfile`
- `pnpm exec vitest run server/src/__tests__/access-service.test.ts
server/src/__tests__/user-profile-routes.test.ts
ui/src/pages/CompanyAccess.test.tsx --hookTimeout=30000`
- `pnpm exec vitest run server/src/__tests__/user-profile-routes.test.ts
--testTimeout=30000 --hookTimeout=30000` after an initial local
embedded-Postgres hook timeout in the combined run.
- Split integration check: merged after runtime/governance and
dev-infra/backups with no merge conflicts.
- Confirmed this branch does not include `pnpm-lock.yaml`.
## Risks
- Medium risk: changes member removal permissions and adds a new user
profile route with cross-table stats.
- The profile page is a new UI surface and may need visual follow-up in
browser QA.
- No database migrations are included.
> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.
## Model Used
- OpenAI Codex, GPT-5.4 tool-enabled coding model, agentic
code-editing/runtime with local shell and GitHub CLI access; exact
context window and reasoning mode are not exposed by the Paperclip
harness.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge
---------
Co-authored-by: Paperclip <noreply@paperclip.ing>
## Thinking Path
> - Paperclip orchestrates AI agents for zero-human companies.
> - Heartbeat runs are the control-plane record of each agent execution
window.
> - Long-running local agents can exhaust context or stop while still
holding useful next-step state.
> - Operators need that stop reason, next action, and continuation path
to be durable and visible.
> - This pull request adds run liveness metadata, continuation
summaries, and UI surfaces for issue run ledgers.
> - The benefit is that interrupted or long-running work can resume with
clearer context instead of losing the agent's last useful handoff.
## What Changed
- Added heartbeat-run liveness fields, continuation attempt tracking,
and an idempotent `0058` migration.
- Added server services and tests for run liveness, continuation
summaries, stop metadata, and activity backfill.
- Wired local and HTTP adapters to surface continuation/liveness context
through shared adapter utilities.
- Added shared constants, validators, and heartbeat types for liveness
continuation state.
- Added issue-detail UI surfaces for continuation handoffs and the run
ledger, with component tests.
- Updated agent runtime docs, heartbeat protocol docs, prompt guidance,
onboarding assets, and skills instructions to explain continuation
behavior.
- Addressed Greptile feedback by scoping document evidence by run,
excluding system continuation-summary documents from liveness evidence,
importing shared liveness types, surfacing hidden ledger run counts,
documenting bounded retry behavior, and moving run-ledger liveness
backfill off the request path.
## Verification
- `pnpm exec vitest run packages/adapter-utils/src/server-utils.test.ts
server/src/__tests__/run-continuations.test.ts
server/src/__tests__/run-liveness.test.ts
server/src/__tests__/activity-service.test.ts
server/src/__tests__/documents-service.test.ts
server/src/__tests__/issue-continuation-summary.test.ts
server/src/services/heartbeat-stop-metadata.test.ts
ui/src/components/IssueRunLedger.test.tsx
ui/src/components/IssueContinuationHandoff.test.tsx
ui/src/components/IssueDocumentsSection.test.tsx`
- `pnpm --filter @paperclipai/db build`
- `pnpm exec vitest run server/src/__tests__/activity-service.test.ts
ui/src/components/IssueRunLedger.test.tsx`
- `pnpm --filter @paperclipai/ui typecheck`
- `pnpm --filter @paperclipai/server typecheck`
- `pnpm exec vitest run server/src/__tests__/activity-service.test.ts
server/src/__tests__/run-continuations.test.ts
ui/src/components/IssueRunLedger.test.tsx`
- `pnpm exec vitest run
server/src/__tests__/heartbeat-process-recovery.test.ts -t "treats a
plan document update"`
- `pnpm exec vitest run server/src/__tests__/activity-service.test.ts
server/src/__tests__/heartbeat-process-recovery.test.ts -t "activity
service|treats a plan document update"`
- Remote PR checks on head `e53b1a1d`: `verify`, `e2e`, `policy`, and
Snyk all passed.
- Confirmed `public-gh/master` is an ancestor of this branch after
fetching `public-gh master`.
- Confirmed `pnpm-lock.yaml` is not included in the branch diff.
- Confirmed migration `0058_wealthy_starbolt.sql` is ordered after
`0057` and uses `IF NOT EXISTS` guards for repeat application.
- Greptile inline review threads are resolved.
## Risks
- Medium risk: this touches heartbeat execution, liveness recovery,
activity rendering, issue routes, shared contracts, docs, and UI.
- Migration risk is mitigated by additive columns/indexes and idempotent
guards.
- Run-ledger liveness backfill is now asynchronous, so the first ledger
response can briefly show historical missing liveness until the
background backfill completes.
- UI screenshot coverage is not included in this packaging pass;
validation is currently through focused component tests.
> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.
## Model Used
- OpenAI Codex, GPT-5.4, local tool-use coding agent with terminal, git,
GitHub connector, GitHub CLI, and Paperclip API access.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge
Screenshot note: no before/after screenshots were captured in this PR
packaging pass; the UI changes are covered by focused component tests
listed above.
---------
Co-authored-by: Paperclip <noreply@paperclip.ing>
## Thinking Path
> - Paperclip is the control plane for autonomous AI companies.
> - V1 needs to stay local-first while also supporting shared,
authenticated deployments.
> - Human operators need real identities, company membership, invite
flows, profile surfaces, and company-scoped access controls.
> - Agents and operators also need the existing issue, inbox, workspace,
approval, and plugin flows to keep working under those authenticated
boundaries.
> - This branch accumulated the multi-user implementation, follow-up QA
fixes, workspace/runtime refinements, invite UX improvements,
release-branch conflict resolution, and review hardening.
> - This pull request consolidates that branch onto the current `master`
branch as a single reviewable PR.
> - The benefit is a complete multi-user implementation path with tests
and docs carried forward without dropping existing branch work.
## What Changed
- Added authenticated human-user access surfaces: auth/session routes,
company user directory, profile settings, company access/member
management, join requests, and invite management.
- Added invite creation, invite landing, onboarding, logo/branding,
invite grants, deduped join requests, and authenticated multi-user E2E
coverage.
- Tightened company-scoped and instance-admin authorization across
board, plugin, adapter, access, issue, and workspace routes.
- Added profile-image URL validation hardening, avatar preservation on
name-only profile updates, and join-request uniqueness migration cleanup
for pending human requests.
- Added an atomic member role/status/grants update path so Company
Access saves no longer leave partially updated permissions.
- Improved issue chat, inbox, assignee identity rendering,
sidebar/account/company navigation, workspace routing, and execution
workspace reuse behavior for multi-user operation.
- Added and updated server/UI tests covering auth, invites, membership,
issue workspace inheritance, plugin authz, inbox/chat behavior, and
multi-user flows.
- Merged current `public-gh/master` into this branch, resolved all
conflicts, and verified no `pnpm-lock.yaml` change is included in this
PR diff.
## Verification
- `pnpm exec vitest run server/src/__tests__/issues-service.test.ts
ui/src/components/IssueChatThread.test.tsx ui/src/pages/Inbox.test.tsx`
- `pnpm run preflight:workspace-links && pnpm exec vitest run
server/src/__tests__/plugin-routes-authz.test.ts`
- `pnpm exec vitest run server/src/__tests__/plugin-routes-authz.test.ts
server/src/__tests__/workspace-runtime-service-authz.test.ts
server/src/__tests__/access-validators.test.ts`
- `pnpm exec vitest run
server/src/__tests__/authz-company-access.test.ts
server/src/__tests__/routines-routes.test.ts
server/src/__tests__/sidebar-preferences-routes.test.ts
server/src/__tests__/approval-routes-idempotency.test.ts
server/src/__tests__/openclaw-invite-prompt-route.test.ts
server/src/__tests__/agent-cross-tenant-authz-routes.test.ts
server/src/__tests__/routines-e2e.test.ts`
- `pnpm exec vitest run server/src/__tests__/auth-routes.test.ts
ui/src/pages/CompanyAccess.test.tsx`
- `pnpm --filter @paperclipai/shared typecheck && pnpm --filter
@paperclipai/db typecheck && pnpm --filter @paperclipai/server
typecheck`
- `pnpm --filter @paperclipai/shared typecheck && pnpm --filter
@paperclipai/server typecheck`
- `pnpm --filter @paperclipai/ui typecheck`
- `pnpm db:generate`
- `npx playwright test --config tests/e2e/playwright.config.ts --list`
- Confirmed branch has no uncommitted changes and is `0` commits behind
`public-gh/master` before PR creation.
- Confirmed no `pnpm-lock.yaml` change is staged or present in the PR
diff.
## Risks
- High review surface area: this PR contains the accumulated multi-user
branch plus follow-up fixes, so reviewers should focus especially on
company-boundary enforcement and authenticated-vs-local deployment
behavior.
- UI behavior changed across invites, inbox, issue chat, access
settings, and sidebar navigation; no browser screenshots are included in
this branch-consolidation PR.
- Plugin install, upgrade, and lifecycle/config mutations now require
instance-admin access, which is intentional but may change expectations
for non-admin board users.
- A join-request dedupe migration rejects duplicate pending human
requests before creating unique indexes; deployments with unusual
historical duplicates should review the migration behavior.
- Company member role/status/grant saves now use a new combined
endpoint; older separate endpoints remain for compatibility.
- Full production build was not run locally in this heartbeat; CI should
cover the full matrix.
## Model Used
- OpenAI Codex coding agent, GPT-5-based model, CLI/tool-use
environment. Exact deployed model identifier and context window were not
exposed by the runtime.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge
Note on screenshots: this is a branch-consolidation PR for an
already-developed multi-user branch, and no browser screenshots were
captured during this heartbeat.
---------
Co-authored-by: dotta <dotta@example.com>
Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
## Thinking Path
> - Paperclip orchestrates AI agents for zero-human companies
> - The heartbeat service monitors agent health via PID liveness checks
for local adapters
> - `SESSIONED_LOCAL_ADAPTERS` in `heartbeat.ts` controls which adapters
get PID tracking and retry-on-lost behavior
> - `hermes_local` (the Hermes Agent adapter) was missing from this set
> - Without it, the orphan reaper immediately marks all Hermes runs as
`process_lost` instead of retrying
> - This PR adds the one-line registration so `hermes_local` gets the
same treatment as `claude_local`, `codex_local`, `cursor`, and
`gemini_local`
> - The benefit is Hermes agent runs complete normally instead of being
killed after ~5 minutes
## What Changed
- Added `"hermes_local"` to the `SESSIONED_LOCAL_ADAPTERS` set in
`server/src/services/heartbeat.ts`
## Verification
- Trigger a Hermes agent run via the wakeup API
- Confirm `heartbeat_runs.status` transitions to `succeeded` (not
`process_lost`)
- Tested end-to-end on a production Paperclip instance with Hermes agent
running heartbeat cycles for 48+ hours
## Risks
Low risk. Additive one-line change — adds a string to an existing set.
No behavioral change for other adapters. Consistent with
`BUILTIN_ADAPTER_TYPES` which already includes `hermes_local`.
## Model Used
- Provider: Anthropic
- Model: Claude Opus 4.6 (claude-opus-4-6)
- Context window: 1M tokens
- Capabilities: Tool use, code execution
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge
Co-authored-by: Antoine Khater <akhater@users.noreply.github.com>
Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>
## Thinking Path
> - Paperclip orchestrates AI agents for zero-human companies
> - The board depends on issue, inbox, cost, and company-skill surfaces
to stay accurate and fast while agents are actively working
> - The PAP-1497 follow-up branch exposed a few rough edges in those
surfaces: stale active-run state on completed issues, missing creator
filters, oversized issue payload scans, and placeholder issue-route
parsing
> - Those gaps make the control plane harder to trust because operators
can see misleading run state, miss the right subset of work, or pay
extra query/render cost on large issue records
> - This pull request tightens those follow-ups across server and UI
code, and adds regression coverage for the affected paths
> - The benefit is a more reliable issue workflow, safer high-volume
cost aggregation, and clearer board/operator navigation
## What Changed
- Added the `v2026.415.0` release changelog entry.
- Fixed stale issue-run presentation after completion and reused the
shared issue-path parser so literal route placeholders no longer become
issue links.
- Added creator filters to the Issues page and Inbox, including
persisted filter-state normalization and regression coverage.
- Bounded issue detail/list project-mention scans and trimmed large
issue-list payload fields to keep issue reads lighter.
- Hardened company-skill list projection and cost/finance aggregation so
large markdown blobs and large summed values do not leak into list
responses or overflow 32-bit casts.
- Added targeted server/UI regression tests for company skills,
costs/finance, issue mention scanning, creator filters, inbox
normalization, and issue reference parsing.
## Verification
- `pnpm exec vitest run
server/src/__tests__/company-skills-service.test.ts
server/src/__tests__/costs-service.test.ts
server/src/__tests__/issues-goal-context-routes.test.ts
server/src/__tests__/issues-service.test.ts ui/src/lib/inbox.test.ts
ui/src/lib/issue-filters.test.ts ui/src/lib/issue-reference.test.ts`
- `gh pr checks 3779`
Current pass set on the PR head: `policy`, `verify`, `e2e`,
`security/snyk (cryppadotta)`, `Greptile Review`
## Risks
- Creator filter options are derived from the currently loaded
issue/agent data, so very sparse result sets may not surface every
historical creator until they appear in the active dataset.
- Cost/finance aggregate casts now use `double precision`; that removes
the current overflow risk, but future schema changes should keep
large-value aggregation behavior under review.
- Issue detail mention scanning now skips comment-body scans on the
detail route, so any consumer that relied on comment-only project
mentions there would need to fetch them separately.
## Model Used
- OpenAI Codex, GPT-5-based coding agent with terminal tool use and
local code execution in the Paperclip workspace. Exact internal model
ID/context-window exposure is not surfaced in this session.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge
---------
Co-authored-by: Paperclip <noreply@paperclip.ing>
## Thinking Path
> - Paperclip orchestrates AI agents for zero-human companies
> - Operators rely on issue, inbox, and routine views to understand what
the company is doing in real time
> - Those views need to stay fast and readable even when issue lists,
markdown comments, and run metadata get large
> - The current branch had a coherent set of UI and live-update
improvements spread across issue search, issue detail rendering, routine
affordances, and workspace lookups
> - This pull request groups those board-facing changes into one
standalone branch that can merge independently of the heartbeat/runtime
work
> - The benefit is a faster, clearer issue and routine workflow without
changing the underlying task model
## What Changed
- Show routine execution issues by default and rename the filter to
`Hide routine runs` so the default state no longer looks like an active
filter.
- Show the routine name in the run dialog and tighten the issue
properties pane with a workspace link, copy-on-click behavior, and an
inline parent arrow.
- Reduce issue detail rerenders, keep queued issue chat mounted, improve
issues page search responsiveness, and speed up issues first paint.
- Add inbox "other search results", refresh visible issue runs after
status updates, and optimize workspace lookups through summary-mode
execution workspace queries.
- Improve markdown wrapping and scrolling behavior for long strings and
self-comment code blocks.
- Relax the markdown sanitizer assertion so the test still validates
safety after the new wrap-friendly inline styles.
## Verification
- `pnpm vitest run ui/src/components/IssuesList.test.tsx
ui/src/lib/inbox.test.ts ui/src/pages/Issues.test.tsx
ui/src/context/BreadcrumbContext.test.tsx
ui/src/context/LiveUpdatesProvider.test.ts
ui/src/components/MarkdownBody.test.tsx
ui/src/api/execution-workspaces.test.ts
server/src/__tests__/execution-workspaces-routes.test.ts`
## Risks
- This touches several issue-facing UI surfaces at once, so regressions
would most likely show up as stale rendering, search result mismatches,
or small markdown presentation differences.
- The workspace lookup optimization depends on the summary-mode route
shape staying aligned between server and UI.
## Model Used
- OpenAI Codex, GPT-5-based coding agent in the Codex CLI environment.
Exact backend model deployment ID was not exposed in-session.
Tool-assisted editing and shell execution were used.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge
---------
Co-authored-by: Paperclip <noreply@paperclip.ing>
## Thinking Path
> - Paperclip orchestrates AI agents for zero-human companies
> - Heartbeat runs are the control-plane record of what agents did, why
they woke up, and what operators should see next
> - Run lists, stranded issue comments, and live log polling all depend
on compact but accurate heartbeat summaries
> - The current branch had a focused backend slice that improves how run
result JSON is summarized, how stale process recovery comments are
written, and how live log polling resolves the active run
> - This pull request isolates that heartbeat/runtime reliability work
from the unrelated UI and dev-tooling changes
> - The benefit is more reliable issue context and cheaper run lookups
without dragging unrelated board UI changes into the same review
## What Changed
- Include the latest run failure in stranded issue comments during
orphaned process recovery.
- Bound heartbeat `result_json` payloads for list responses while
preserving the raw stored payloads.
- Narrow heartbeat log endpoint lookups so issue polling resolves the
relevant active run with less unnecessary scanning.
- Add focused tests for heartbeat list summaries, live run polling,
orphaned process recovery, and the run context/result summary helpers.
## Verification
- `pnpm vitest run
server/src/__tests__/heartbeat-context-summary.test.ts
server/src/__tests__/heartbeat-list.test.ts
server/src/__tests__/agent-live-run-routes.test.ts
server/src/__tests__/heartbeat-process-recovery.test.ts`
## Risks
- The main risk is accidentally hiding a field that some client still
expects from summarized `result_json`, or over-constraining the live log
lookup path for edge-case run routing.
- Recovery comments now surface the latest failure more aggressively, so
wording changes may affect downstream expectations if anyone parses
those comments too strictly.
## Model Used
- OpenAI Codex, GPT-5-based coding agent in the Codex CLI environment.
Exact backend model deployment ID was not exposed in-session.
Tool-assisted editing and shell execution were used.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge
## Thinking Path
> - Paperclip orchestrates AI agents for zero-human companies
> - The control plane depends on authenticated routes enforcing company
boundaries and role permissions correctly
> - This branch also touches the issue detail and markdown editing flows
operators use while handling advisory and triage work
> - Partial issue cache seeds and fragile rich-editor parsing could
leave important issue content missing or blank at the moment an operator
needed it
> - Blocked issues becoming actionable again should wake their assignee
automatically instead of silently staying idle
> - This pull request rebases the advisory follow-up branch onto current
`master`, hardens authenticated route authorization, and carries the
issue-detail/editor reliability fixes forward with regression tests
> - The benefit is tighter authz on sensitive routes plus more reliable
issue/advisory editing and wakeup behavior on top of the latest base
## What Changed
- Hardened authenticated route authorization across agent, activity,
approval, access, project, plugin, health, execution-workspace,
portability, and related server paths, with new cross-tenant and
runtime-authz regression coverage.
- Switched issue detail queries from `initialData` to placeholder-based
hydration so list/quicklook seeds still refetch full issue bodies.
- Normalized advisory-style HTML images before mounting the markdown
editor and strengthened fallback behavior when the rich editor silently
fails or rejects the content.
- Woke assigned agents when blocked issues move back to `todo`, with
route coverage for reopen and unblock transitions.
- Rebasing note: this branch now sits cleanly on top of the latest
`master` tip used for the PR base.
## Verification
- `pnpm exec vitest run ui/src/lib/issueDetailQuery.test.tsx
ui/src/components/MarkdownEditor.test.tsx
server/src/__tests__/issue-comment-reopen-routes.test.ts
server/src/__tests__/activity-routes.test.ts
server/src/__tests__/agent-cross-tenant-authz-routes.test.ts`
- Confirmed `pnpm-lock.yaml` is not part of the PR diff.
- Rebased the branch onto current `public-gh/master` before publishing.
## Risks
- Broad authz tightening may expose existing flows that were relying on
permissive board or agent access and now need explicit grants.
- Markdown editor fallback changes could affect focus or rendering in
edge-case content that mixes HTML-like advisory markup with normal
markdown.
- This verification was intentionally scoped to touched regressions and
did not run the full repository suite.
## Model Used
- OpenAI Codex, GPT-5-based coding agent in the Codex CLI environment
with tool use for terminal, git, and GitHub operations. The exact
runtime model identifier is not exposed inside this session.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, it is behavior-only and does not
need before/after screenshots
- [x] I have updated relevant documentation to reflect my changes, or no
documentation changes were needed for these internal fixes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge
---------
Co-authored-by: Paperclip <noreply@paperclip.ing>
## Thinking Path
> - Paperclip orchestrates AI agents for zero-human companies
> - Routines are recurring tasks that trigger agents on a schedule or
via webhook
> - Routine triggers store their schedule as a `cronExpression` +
`timezone` in the database
> - The `GET /companies/:companyId/routines` list endpoint is the
primary way API consumers (and the UI) discover all routines and their
triggers
> - But the list endpoint was silently dropping `cronExpression` and
`timezone` from each trigger object — the DB query fetched them, but the
explicit object-construction mapping only forwarded seven other fields
> - This PR fixes the mapping to include `cronExpression` and
`timezone`, and extends the `RoutineListItem.triggers` type to match
> - The benefit is that API consumers can now see the actual schedule
from the list endpoint, and future UI components reading from the list
cache will get accurate schedule data
## What Changed
- **`server/src/services/routines.ts`** — Added `cronExpression` and
`timezone` to the explicit trigger object mapping inside
`routinesService.list()`. The DB query (`listTriggersForRoutineIds`)
already fetched all columns via `SELECT *`; the values were being
discarded during object construction.
- **`packages/shared/src/types/routine.ts`** — Extended
`RoutineListItem.triggers` `Pick<RoutineTrigger, ...>` to include
`cronExpression` and `timezone` so the TypeScript type contract matches
the actual runtime shape.
- **`server/src/__tests__/routines-e2e.test.ts`** — Added assertions to
the existing schedule-trigger E2E test that verify both `cronExpression`
and `timezone` are present in the `GET /companies/:companyId/routines`
list response.
## Verification
```bash
# Run the route + service unit tests
npx vitest run server/src/__tests__/routines-routes.test.ts server/src/__tests__/routines-service.test.ts
# → 21 tests pass
# Confirm cronExpression appears in list response
curl /api/companies/{id}/routines | jq '.[].triggers[].cronExpression'
# → now returns the actual cron string instead of undefined
```
Manual reproduction per the issue:
1. Create a routine with a schedule trigger (`cronExpression: "47 14 * *
*"`, `timezone: "America/Mexico_City"`)
2. `GET /api/companies/{id}/routines` — trigger object now includes
`cronExpression` and `timezone`
## Risks
Low risk. The change only adds two fields to an existing response shape
— no fields removed, no behavior changed. The `cronExpression` is `null`
for non-schedule trigger kinds (webhook, etc.), consistent with
`RoutineTrigger.cronExpression: string | null`. No migration required.
## Model Used
- **Provider:** Anthropic
- **Model:** Claude Sonnet 4.6 (`claude-sonnet-4-6`)
- **Context window:** 200k tokens
- **Mode:** Extended thinking + tool use (agentic)
- Secondary adversarial review: OpenAI Codex (via codex-companion
plugin)
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] If this change affects the UI, I have included before/after
screenshots (API-only fix; no UI rendering change)
- [ ] I have updated relevant documentation to reflect my changes (no
doc changes needed)
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge
## Thinking Path
> - Paperclip orchestrates AI agents for zero-human companies
> - Reliable execution depends on heartbeat routing, issue lifecycle
semantics, telemetry, and a fast enough local verification loop to keep
regressions visible
> - The remaining commits on this branch were mostly server/runtime
correctness fixes plus test and documentation follow-ups in that area
> - Those changes are logically separate from the UI-focused
issue-detail and workspace/navigation branches even when they touch
overlapping issue APIs
> - This pull request groups the execution reliability, heartbeat,
telemetry, and tooling changes into one standalone branch
> - The benefit is a focused review of the control-plane correctness
work, including the follow-up fix that restored the implicit
comment-reopen helpers after branch splitting
## What Changed
- Hardened issue/heartbeat execution behavior, including self-review
stage skipping, deferred mention wakes during active execution, stranded
execution recovery, active-run scoping, assignee resolution, and
blocked-to-todo wake resumption
- Reduced noisy polling/logging overhead by trimming issue run payloads,
compacting persisted run logs, silencing high-volume request logs, and
capping heartbeat-run queries in dashboard/inbox surfaces
- Expanded telemetry and status semantics with adapter/model fields on
task completion plus clearer status guidance in docs/onboarding material
- Updated test infrastructure and verification defaults with faster
route-test module isolation, cheaper default `pnpm test`, e2e isolation
from local state, and repo verification follow-ups
- Included docs/release housekeeping from the branch and added a small
follow-up commit restoring the implicit comment-reopen helpers that were
dropped during branch reconstruction
## Verification
- `pnpm vitest run
server/src/__tests__/issue-comment-reopen-routes.test.ts
server/src/__tests__/issue-telemetry-routes.test.ts`
- `pnpm vitest run server/src/__tests__/http-log-policy.test.ts
server/src/__tests__/heartbeat-run-log.test.ts
server/src/__tests__/health.test.ts`
- `server/src/__tests__/activity-service.test.ts`,
`server/src/__tests__/heartbeat-comment-wake-batching.test.ts`, and
`server/src/__tests__/heartbeat-process-recovery.test.ts` were attempted
on this host but the embedded Postgres harness reported
init-script/data-dir problems and skipped or failed to start, so they
are noted as environment-limited
## Risks
- Medium: this branch changes core issue/heartbeat routing and
reopen/wakeup behavior, so regressions would affect agent execution flow
rather than isolated UI polish
- Because it also updates verification infrastructure, reviewers should
pay attention to whether the new tests are asserting the right failure
modes and not just reshaping harness behavior
## Model Used
- OpenAI Codex coding agent (GPT-5-class runtime in Codex CLI; exact
deployed model ID is not exposed in this environment), reasoning
enabled, tool use and local code execution enabled
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [ ] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge
---------
Co-authored-by: Paperclip <noreply@paperclip.ing>
## Thinking Path
> - Paperclip orchestrates AI agents for zero-human companies
> - That operator experience depends not just on issue chat, but also on
how workspaces, inbox groups, and navigation state behave over
long-running sessions
> - The current branch included a separate cluster of workspace-runtime
controls, inbox grouping, sidebar ordering, and worktree lifecycle fixes
> - Those changes cross server, shared contracts, database state, and UI
navigation, but they still form one coherent operator workflow area
> - This pull request isolates the workspace/runtime and navigation
ergonomics work into one standalone branch
> - The benefit is better workspace recovery and navigation persistence
without forcing reviewers through the unrelated issue-detail/chat work
## What Changed
- Improved execution workspace and project workspace controls, request
wiring, layout, and JSON editor ergonomics
- Hardened linked worktree reuse/startup behavior and documented the
`worktree repair` flow for recovering linked worktrees safely
- Added inbox workspace grouping, mobile collapse, archive undo,
keyboard navigation, shared group-header styling, and persisted
collapsed-group behavior
- Added persistent sidebar order preferences with the supporting DB
migration, shared/server contracts, routes, services, hooks, and UI
integration
- Scoped issue-list preferences by context and added targeted UI/server
tests for workspace controls, inbox behavior, sidebar preferences, and
worktree validation
## Verification
- `pnpm vitest run
server/src/__tests__/sidebar-preferences-routes.test.ts
ui/src/pages/Inbox.test.tsx
ui/src/components/ProjectWorkspaceSummaryCard.test.tsx
ui/src/components/WorkspaceRuntimeControls.test.tsx
ui/src/api/workspace-runtime-control.test.ts`
- `server/src/__tests__/workspace-runtime.test.ts` was attempted, but
the embedded Postgres suite self-skipped/hung on this host after
reporting an init-script issue, so it is not counted as a local pass
here
## Risks
- Medium: this branch includes migration-backed preference storage plus
worktree/runtime behavior, so merge review should pay attention to state
persistence and worktree recovery semantics
- The sidebar preference migration is standalone, but it should still be
watched for conflicts if another migration lands first
## Model Used
- OpenAI Codex coding agent (GPT-5-class runtime in Codex CLI; exact
deployed model ID is not exposed in this environment), reasoning
enabled, tool use and local code execution enabled
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [ ] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge
---------
Co-authored-by: Paperclip <noreply@paperclip.ing>
## Thinking Path
> - Paperclip orchestrates AI agents for zero-human companies
> - A core part of that is the operator experience around reading issue
state, agent chat, and sub-task structure
> - The current branch had a long run of issue-detail and issue-list UX
fixes that all improve how humans follow and steer active work
> - Those changes mostly live in the UI/chat surface and should be
reviewed together instead of mixed with workspace/runtime work
> - This pull request packages the issue-detail, chat, markdown, and
sub-issue list improvements into one standalone change
> - The benefit is a cleaner, less jumpy, more reliable issue workflow
on desktop and mobile without coupling it to unrelated server/runtime
refactors
## What Changed
- Stabilized issue chat runtime wiring, optimistic comment handling,
queued-comment cancellation, and composer anchoring during live updates
- Fixed several issue-detail rendering and navigation regressions
including placeholder bleed, local polling scope, mobile inbox-to-issue
transitions, and visible refresh resets
- Improved markdown and rich-content handling with advisory image
normalization, editor fallback behavior, touch mention recovery, and
`issue:` quicklook links
- Refined sub-issue behavior with parent-derived defaults, current-user
inheritance fixes, empty-state cleanup, and a reusable issue-list
presentation for sub-issues
- Added targeted UI tests for the new issue-detail, chat scroll/message,
placeholder-data, markdown, and issue-list behaviors
## Verification
- `pnpm vitest run ui/src/components/IssueChatThread.test.tsx
ui/src/components/MarkdownEditor.test.tsx
ui/src/components/IssuesList.test.tsx
ui/src/context/LiveUpdatesProvider.test.tsx
ui/src/lib/issue-chat-messages.test.ts
ui/src/lib/issue-chat-scroll.test.ts
ui/src/lib/issue-detail-subissues.test.ts
ui/src/lib/query-placeholder-data.test.tsx
ui/src/hooks/usePaperclipIssueRuntime.test.tsx`
## Risks
- Medium: this branch touches the highest-traffic issue-detail UI paths,
so regressions would show up as chat/thread or sub-issue UX glitches
- The changes are UI-heavy and would benefit from reviewer screenshots
or a quick manual browser pass before merge
## Model Used
- OpenAI Codex coding agent (GPT-5-class runtime in Codex CLI; exact
deployed model ID is not exposed in this environment), reasoning
enabled, tool use and local code execution enabled
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] If this change affects the UI, I have included before/after
screenshots
- [ ] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge
---------
Co-authored-by: Paperclip <noreply@paperclip.ing>
## Thinking Path
> - Paperclip orchestrates AI agents for zero-human companies
> - The issue detail page displays comment threads with rich timeline
rendering
> - Long threads (100+ items) cause severe typing lag in the comment
composer because every keystroke re-renders the entire timeline
> - CDP tracing confirmed 110ms avg key→paint latency and 60 long tasks
blocking the main thread for 3.7s total
> - This pull request memoizes the timeline, stabilizes callback props,
debounces editor observers, and reduces idle polling frequency
> - The benefit is responsive typing (21ms avg, 5.3× faster) even on
threads with 100+ timeline items
## What Changed
- **CommentThread.tsx**: Memoize `TimelineList` with `useMemo` so typing
state changes don't re-render 143 timeline items; extract
`handleFeedbackVote` to `useCallback`; added missing deps
(`pendingApprovalAction`, `onApproveApproval`, `onRejectApproval`) to
useMemo array
- **IssueDetail.tsx**: Extract inline callbacks (`handleCommentAdd`,
`handleCommentVote`, `handleCommentImageUpload`,
`handleCommentAttachImage`, `handleInterruptQueued`) to `useCallback`
with `.mutateAsync` deps (not full mutation objects) for stable
references; add conditional polling intervals (3s active / 30s idle) for
`liveRuns`, `activeRun`, `linkedRuns`, and timeline queries
- **MarkdownEditor.tsx**: Debounce `MutationObserver` and
`selectionchange` handlers via `requestAnimationFrame` coalescing
- **LiveRunWidget.tsx**: Accept optional `liveRunsData` and
`activeRunData` props to reuse parent-fetched data instead of duplicate
polling
## Verification
- Navigated to [IP address]:3105/PAPA/issues/PAPA-32 (thread with 100+
items)
- Typed in comment composer — lag eliminated, characters appear
instantly
- CDP trace test script (`test-typing-lag.mjs`) confirmed: avg 21ms
key→paint (was 110ms), 5 long tasks (was 60), 0.5s blocking (was 3.7s)
- Ran `pnpm test:run` locally — all tests pass
## Risks
- Low risk. All changes are additive memoization and callback
stabilization — no behavioral changes. Polling intervals are only
reduced for idle state; active runs still poll at 3–5s.
## Model Used
- Claude Opus 4.6 (`claude-opus-4-6`) via Claude Code CLI, with tool use
and extended context
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge
---------
Co-authored-by: Paperclip <noreply@paperclip.ing>
Replace single retentionDays with a three-tier BackupRetentionPolicy:
- Daily: keep all backups (presets: 3, 7, 14 days; default 7)
- Weekly: keep one per calendar week (presets: 1, 2, 4 weeks; default 4)
- Monthly: keep one per calendar month (presets: 1, 3, 6 months; default 1)
Pruning sorts backups newest-first and applies each tier's cutoff,
keeping only the newest entry per ISO week/month bucket. The Instance
Settings General page now shows three preset selectors (no icon, matches
existing page design). Remove Database icon import.
Compress database backups with gzip (.sql.gz), reducing file size ~83%.
Add backup retention configuration to Instance Settings UI with preset
options (7 days, 2 weeks, 1 month). The backup scheduler now reads
retention from the database on each tick so changes take effect without
restart. Default retention changed from 30 to 7 days.
Compare Buffer byte lengths instead of string character lengths before
timingSafeEqual to avoid potential mismatch with multi-byte input.
Add comment explaining the hubSignatureHeader ?? signatureHeader fallback.
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Adds two new webhook trigger signing modes for external provider
compatibility:
- github_hmac: accepts X-Hub-Signature-256 header with
HMAC-SHA256(secret, rawBody), no timestamp prefix. Compatible with
GitHub, Sentry, and services following the same standard.
- none: no authentication; the 24-char hex publicId in the URL acts
as the shared secret. For services that cannot add auth headers.
The replay window UI field is hidden when these modes are selected
since neither uses timestamp-based replay protection.
Closes#1892
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Dotta