130 Commits

Author	SHA1	Message	Date
Devin Foley	1f70fd9a22	PAPA-430: workspace finalize gates + no-remote-git enforcement (#6969) ... ## Thinking Path > - Paperclip orchestrates AI agents across isolated execution workspaces; the local cwd is the only persistence boundary between runs. > - Workspace lifecycle (worktree_prepare → execute → workspace_finalize) and the wake/accept flow are what guarantee that dependent issues see a consistent worktree. > - PAPA-380 / PAPA-431 / PAPA-432 / PAPA-440 surfaced three holes in that contract: silent env reuse across assignees, dependent wakes firing before finalize, and `issue.interaction.accept` advancing before finalize landed. > - PAPA-441 / PAPA-442 then needed to document the "no remote git" contract and prevent future adapter/runtime code from quietly reintroducing `git push` as a backdoor sync. > - This pull request lands those server fixes, the static `check-no-git-push` enforcement, the AUTHORING.md cross-link, and the Cody-review follow-ups on the PAPA-430 thread. > - The benefit is that finalize is a real barrier — board accepts, dependent wakes, and operator-set env all respect it — and adapter code can't bypass it via raw `git push`. ## What Changed - **server (PAPA-380, PAPA-431):** `execution-workspace-policy` refuses silent env reuse when the assignee's resolved env disagrees with the workspace it would inherit. The inheritance protection is now scoped to the actual inheritance signal — explicit issue-level `environmentId` is honored even when the agent's default env is `null`. - **server (PAPA-432):** `heartbeat.ts` gates dependent wakes on `listUnfinalizedExecutionWorkspaceIds`, and writes a `workspace_finalize` row on the succeeded path. Write failures now surface instead of being swallowed so dependents aren't silently stranded behind a missing row. - **server (PAPA-440):** `issue-thread-interactions.acceptInteraction` adds a workspace_finalize precondition for `request_confirmation` (not `suggest_tasks`). Accept returns 409 if finalize hasn't succeeded for the latest workspace operation. - **ci (PAPA-442):** new `scripts/check-no-git-push.mjs` static check scans `packages/adapters/`, `packages/adapter-utils/`, `server/src/`, and `cli/src/` for any `git push` invocation (string or args-array). Wired into the `policy` PR job and `test:release-registry`. Operators can opt in per-call with `// paperclip:allow-git-push: <reason>`. Release scripts are out of scope by design. - **docs (PAPA-441):** `AUTHORING.md` documents the no-remote-git contract and cross-links the static check so adapter authors learn the rule and the enforcement together. - **review follow-up (PAPA-430, Cody):** three fixes — env resolver bug, accept-gate scope (request_confirmation only), and finalize record write on the succeeded path. ## Verification - `pnpm exec vitest run server/src/__tests__/execution-workspace-policy.test.ts server/src/__tests__/issue-thread-interactions-service.test.ts` → 33/33 pass - `node scripts/check-no-git-push.test.mjs` → check covers string form, args-array form, comment exclusions, and per-line allow-comment. - Manual: server compiles; the policy job runs the check in <1s before heavier jobs. ## Risks - **Behavioral shift in accept:** boards accepting `request_confirmation` while finalize is in-flight now get 409s. This is intentional — they can retry — but it changes timing on a hot path. `suggest_tasks` is unaffected. - **Workspace policy:** the env-reuse refusal is a new error path. Issues that previously silently reused an env from a different-assignee workspace will now fail-loud; the resolver still honors explicit issue-level `executionWorkspaceSettings.environmentId`. - **CI rule:** any future legitimate `git push` in scoped dirs must be marked with the allow-comment, which is the intended ergonomic. ## Model Used - Claude Opus 4.7 (`claude-opus-4-7`, extended thinking), via Claude Code in the Paperclip executor adapter. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots (N/A — server/CI/docs only) - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge Closes related issues: PAPA-430, PAPA-380, PAPA-431, PAPA-432, PAPA-440, PAPA-441, PAPA-442 --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-05-29 08:25:29 -07:00
Dotta	9eac727cf1	[codex] Add skills CLI and catalog management (#6782) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies through company-scoped control-plane workflows. > - Agents need reusable, inspectable skills that can be installed, reset, audited, exported, and assigned without bespoke local setup. > - The existing skill truth model needed cleanup so bundled skills, optional catalog skills, runtime skills, and adapter-provided skills have clear provenance. > - Operators also need a practical CLI and board UI for discovering and managing company skills. > - This pull request adds the skills CLI, packaged skills catalog, company skills APIs, and catalog-aware board UI. > - The benefit is a more reusable Paperclip company setup where skills are portable, auditable, and easier for operators and agents to manage. ## What Changed - Added `paperclipai skills` CLI commands and coverage for catalog listing, installing, resetting, and inspecting company skills. - Added a packaged `@paperclipai/skills-catalog` workspace with bundled and optional skill content plus validation/build tests. - Added shared company-skill types and validators used across CLI, server, and UI contracts. - Added server catalog APIs/services for company skill catalog operations, reset semantics, audit behavior, and portability provenance. - Updated adapter skill handling so runtime/catalog provenance remains explicit across local adapters. - Added board UI support for browsing and managing catalog-backed company skills. - Updated docs for the skills CLI/catalog flow and the company skills Paperclip skill reference. - Rebased the branch onto current `paperclipai/paperclip:master`; no `pnpm-lock.yaml`, `.github/workflows`, or migration files are included in the final PR diff. ## Verification - Passed: `pnpm run preflight:workspace-links && pnpm exec vitest run cli/src/__tests__/skills.test.ts packages/skills-catalog/src/catalog-builder.test.ts packages/skills-catalog/src/shipped-catalog.test.ts packages/shared/src/validators/company-skill.test.ts packages/adapter-utils/src/server-utils.test.ts packages/plugins/create-paperclip-plugin/src/entrypoints.test.ts server/src/__tests__/company-skills-catalog-service.test.ts server/src/__tests__/company-skills-routes.test.ts server/src/__tests__/company-portability.test.ts`. - Passed: `pnpm exec vitest run server/src/__tests__/workspace-runtime.test.ts -t "default branch|origin/master|symbolic-ref"`. - Attempted: full `server/src/__tests__/workspace-runtime.test.ts`. Four provisioning tests failed while seeding an isolated worktree database from the local Paperclip instance because the local plugin schema dump contains a duplicate-column foreign key (`plugin_content_machine_18a7bc327b.content_case_signals`). The default-branch tests touched by the rebase conflict passed in the focused run above. - Checked final diff: no `pnpm-lock.yaml`, no `.github/workflows`, and no migration-file changes relative to `master`. ## Risks - Medium: this is a broad skills/catalog change touching CLI, server APIs, shared contracts, adapter skill sync, and UI. - Catalog validation and reset semantics need careful reviewer attention because they affect reusable company setup and portability. - No database migrations are included in this PR, so there is no migration ordering/idempotency risk in the final diff. - No lockfile is included by design; dependency resolution will be handled by the repository lockfile workflow. ## Model Used - OpenAI Codex coding agent based on GPT-5, running in Paperclip via the `codex_local` adapter with shell, git, GitHub CLI, and code-editing tool access. Exact hosted model build/context-window metadata is not exposed in this runtime. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run targeted tests locally and documented the local workspace-runtime seed failure above - [x] I have added or updated tests where applicable - [x] If this change affects the UI, screenshots were intentionally omitted per PAP-10124 instructions; UI behavior is covered by tests and reviewer inspection - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-05-28 07:33:51 -10:00
Devin Foley	e3c875c1c7	fix(sandbox): prevent E2B workspace upload + lease idle failures (PAPA-382) (#6560) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Heartbeats run inside managed sandboxes (E2B, Cloudflare Sandbox), and each run begins by uploading the agent's workspace as a tar archive > - PAPA-381's E2B runs were failing at 5 and 11 minutes — two distinct failure modes were entangled: workspace tar extraction errors on Linux, and sandbox idle/lease timeouts during normal heartbeat gaps > - Workspace tar extraction failed because macOS bsdtar embeds `LIBARCHIVE.xattr.*` PAX headers that GNU tar on Linux rejects with "This does not look like a tar archive"; the existing `COPYFILE_DISABLE=1` only suppresses AppleDouble `._*` sidecars, not inline PAX xattr entries > - E2B sandboxes also expired between heartbeats because `timeoutMs` defaulted to a short window and was never refreshed per execute, and Cloudflare sandboxes idled out because `sleepAfter` defaulted to 10 minutes > - This pull request adds `--no-xattrs` to the workspace tar invocation, refreshes the E2B sandbox lifetime on each execute and bumps the default `timeoutMs` to 1h, and raises the Cloudflare `sleepAfter` default to 1h > - The benefit is that long-running heartbeat-driven runs (Claude, Codex, etc.) survive across both their initial workspace upload and the natural idle gaps between executes on both E2B and Cloudflare ## What Changed - `packages/adapter-utils/src/sandbox-managed-runtime.ts`: added `--no-xattrs` to `createTarballFromDirectory` so macOS bsdtar produces a clean POSIX tar that GNU tar on Linux can extract, with an inline comment explaining why `COPYFILE_DISABLE=1` alone is insufficient. - `packages/plugins/sandbox-providers/e2b/src/plugin.ts`: refresh the sandbox lifetime on every execute (so long runs don't expire mid-job) and raised the default `timeoutMs` to 1h. - `packages/plugins/sandbox-providers/e2b/src/manifest.ts` and `plugin.test.ts`: updated manifest defaults and added regression coverage for the new behavior. - `packages/plugins/sandbox-providers/cloudflare/src/config.ts`, `manifest.ts`, `plugin.test.ts`: raised default `sleepAfter` from 10m to 1h, mirroring the E2B 1h default, and added a regression test asserting the acquire-lease request body sends `sleepAfter: "1h"` when not overridden. ## Verification - `pnpm --filter @paperclipai/plugin-e2b test` - `pnpm --filter @paperclipai/plugin-cloudflare-sandbox test` - Locally cherry-picked the `--no-xattrs` fix onto master and confirmed end-to-end via a real PAPA-381-style heartbeat-driven E2B run that the workspace upload now extracts cleanly on Linux. The user (board operator) tested this on master and reported "Ok, that worked." - Manual reviewer steps: trigger an E2B heartbeat from a macOS host (this is where the bsdtar xattr headers come from), confirm the workspace tar extracts on the Linux sandbox side; run a long (>15 min) Cloudflare sandbox flow and confirm no lost-lease/idle errors between executes. ## Risks - Low risk overall. - `--no-xattrs` is widely supported by both macOS bsdtar and GNU tar (Linux). Worst case it silently no-ops on a future host that doesn't support it; in that case the existing failure mode reappears, it doesn't introduce a new one. - Raising default `timeoutMs` (E2B) and `sleepAfter` (Cloudflare) from short values to 1h means sandboxes stay alive longer between executes by default. This is the intended behavior — operators that want a tighter idle window can still override via plugin config. - E2B per-execute sandbox lifetime refresh adds a small API call per execute; it is bounded by the same client that already handles execute traffic, so no new dependencies or retry semantics. ## Model Used - Claude (Anthropic), `claude-opus-4-7`, extended thinking enabled, tool use enabled (file/grep/git tools and Paperclip control-plane API). Used to diagnose the dual failure mode (workspace tar PAX xattr headers + sandbox lifetime), write the fixes and tests, and drive the verification loop with the board operator. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots (N/A — no UI changes) - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-05-22 13:34:11 -07:00
Dotta	d734bd43d1	[codex] Roll up May 17 branch changes (#6210) ... ## Thinking Path > - Paperclip is the control plane for autonomous AI companies, so agent work needs visible ownership, recovery, and operator controls. > - This local branch had accumulated several related control-plane reliability and operator-experience fixes across recovery actions, watchdog folding, model-profile defaults, mentions, markdown editing, plugin launchers, and small UI polish. > - The branch needed to be converted into a PR against the current `origin/master` without losing dirty work or including lockfile/workflow churn. > - The safest standalone shape is a single rollup PR because the recovery/server/UI files overlap heavily across the local commits and splitting would create avoidable conflicts. > - This pull request replays the local branch onto latest `origin/master`, preserves the uncommitted work as logical commits, and adds a Zod 4 validator compatibility fix found during verification. > - The benefit is that the May 17 local branch can be reviewed and merged as one coherent, conflict-free branch under the 100-file Greptile limit. ## What Changed - Rebased the local May 17 branch work onto current `origin/master` in a dedicated worktree. - Preserved and committed previously dirty changes for recovery retry handling, plugin/sidebar launcher polish, and `.herenow` ignores. - Added recovery-action behavior for returning source issues to `todo` when retrying source-scoped recovery. - Included the existing local recovery/liveness/watchdog fold, Codex cheap-profile, markdown/mention, duplicate-agent, and UI polish commits from the branch. - Normalized shared validator `z.record(...)` schemas to explicit string-key records for Zod 4 compatibility. - Confirmed the PR has no `pnpm-lock.yaml` or `.github/workflows/*` changes and stays below the 100-file Greptile limit. ## Verification - `pnpm install --frozen-lockfile --ignore-scripts` - `npm run install` in `node_modules/.pnpm/sqlite3@5.1.7/node_modules/sqlite3` to build the local native sqlite3 binding after installing with scripts disabled - `pnpm exec vitest run packages/shared/src/validators/issue.test.ts packages/shared/src/project-mentions.test.ts packages/adapter-utils/src/server-utils.test.ts server/src/__tests__/heartbeat-model-profile.test.ts server/src/__tests__/issue-recovery-actions.test.ts server/src/__tests__/issue-agent-mutation-ownership-routes.test.ts server/src/__tests__/heartbeat-active-run-output-watchdog.test.ts server/src/__tests__/plugin-local-folders.test.ts ui/src/components/IssueRecoveryActionCard.test.tsx ui/src/components/Sidebar.test.tsx ui/src/components/SidebarAccountMenu.test.tsx ui/src/components/IssueProperties.test.tsx ui/src/components/MarkdownEditor.test.tsx ui/src/components/MarkdownBody.test.tsx ui/src/lib/duplicate-agent-payload.test.ts ui/src/pages/Routines.test.tsx` - First pass: 13 files passed with 201 passing tests; 3 server files failed before sqlite3 native binding was built. - After rebuilding sqlite3: `server/src/__tests__/heartbeat-model-profile.test.ts`, `server/src/__tests__/issue-recovery-actions.test.ts`, and `server/src/__tests__/heartbeat-active-run-output-watchdog.test.ts` passed/loaded; embedded Postgres tests were skipped by the local host guard. - `pnpm --filter @paperclipai/shared typecheck` - `pnpm --filter @paperclipai/adapter-utils typecheck` - `pnpm --filter @paperclipai/server typecheck` - `pnpm --filter @paperclipai/ui typecheck` ## Risks - Medium risk: this is a broad rollup PR across recovery semantics, server tests, shared validators, and UI surfaces. - Some embedded Postgres tests skipped locally due the host guard, so CI should provide the stronger database-backed signal. - UI changes were covered by component tests, but no browser screenshot was captured in this PR creation pass. - This branch may overlap with existing recovery/liveness PR work; merge this PR independently or restack/close overlapping branches rather than merging duplicate implementations together. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5-based coding agent, tool-enabled local repository and GitHub workflow, medium reasoning effort. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-05-17 17:15:06 -05:00
Dotta	4c47eb46c3	[codex] Add multilingual issue preservation coverage (#6069) ... ## Thinking Path > - Paperclip orchestrates AI agents for autonomous companies. > - Agents and board operators coordinate through company-scoped issues, comments, documents, and heartbeat wake payloads. > - Chinese, Japanese, and Hindi text needs to survive the full issue lifecycle without normalization or prompt serialization damage. > - The riskiest paths are board issue creation, server issue/comment/document round-tripping, and scoped wake prompt rendering. > - This pull request adds focused regression coverage across those surfaces. > - The benefit is higher confidence that multilingual operators and agents can create, search, comment on, complete, and wake on issues using non-Latin text. ## What Changed - Added adapter-utils wake payload and prompt rendering coverage for Chinese, Japanese, and Hindi issue/comment text. - Added UI New Issue dialog coverage proving multilingual title and description text is submitted unchanged. - Added server route coverage that round-trips multilingual issue text through create, search, comments, documents, completion comments, and heartbeat context. - Addressed Greptile feedback by using a typed storage mock and splitting the server route integration path into smaller ordered assertions. ## Verification - `pnpm exec vitest run packages/adapter-utils/src/server-utils.test.ts ui/src/components/NewIssueDialog.test.tsx server/src/__tests__/multilingual-issues-routes.test.ts` - Result: 3 test files passed, 51 tests passed. ## Risks - Low risk: this PR adds regression coverage only and does not change runtime behavior. - The new server test uses embedded Postgres support and skips on unsupported hosts using the existing helper pattern. - No migrations are included. - No `pnpm-lock.yaml` changes are included. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected - check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5 based coding agent, with shell, git, Vitest, and GitHub connector/CLI tool use. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge	2026-05-15 12:49:57 -05:00
Dotta	d1a8c873b2	fix(remote-sandbox): harden host workspace resumes (#5922) ... ## Thinking Path > - Paperclip orchestrates AI agents through a control plane while adapters execute work in local, remote, or sandboxed runtimes. > - Remote sandbox execution depends on a strict host-versus-remote workspace boundary: the host prepares/restores files, while the adapter command runs inside the sandbox cwd. > - Jannes' PR #5823 identified host-side failure modes that were not covered by replacement PR #5822. > - Persisting a remote pod cwd in session params could poison the next host heartbeat resume and make Paperclip inspect or upload system temp roots. > - Plugin sandbox providers also need a narrow way to receive model-provider API keys without exposing the full server environment to every plugin worker. > - This pull request ports the host-side fixes from #5823 in the current codebase style, with focused regression coverage. > - The benefit is safer remote sandbox resumes and plugin worker environment handling without broadening core plugin privileges. ## What Changed - Persist host workspace cwd, not remote sandbox cwd, in `claude_local` session params while retaining remote execution identity metadata. - Reject saved session cwds that point at system roots before heartbeat falls back to agent home workspace. - Skip sockets, FIFOs, devices, and other non-file entries during workspace restore snapshot capture/comparison. - Pass a small model-provider API-key allowlist only to plugins declaring `environment.drivers.register`. - Added focused regression tests for remote Claude session params, unsafe session cwd detection, plugin worker env filtering, and non-file snapshot entries. Credits: ports host-side fixes from Jannes' #5823. ## Verification - `pnpm vitest run packages/adapter-utils/src/workspace-restore-merge.test.ts server/src/services/session-workspace-cwd.test.ts server/src/__tests__/claude-local-execute.test.ts server/src/__tests__/plugin-database.test.ts` (25 passed, 7 skipped by existing embedded-Postgres host guard) - `pnpm --filter @paperclipai/adapter-utils typecheck` - `pnpm --filter @paperclipai/adapter-claude-local typecheck` - `pnpm --filter @paperclipai/server typecheck` ## Risks - Low risk: changes are scoped to remote sandbox/session metadata, workspace snapshot filtering, and plugin worker env setup. - Sandbox-provider plugins now receive only the explicit model-provider key allowlist; any provider needing another key name will need a deliberate allowlist update. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5-based coding agent, tool-enabled local code execution and repository editing. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-05-13 16:23:04 -05:00
Devin Foley	ad0bb57350	Fix exe.dev sandbox installs for gemini/opencode local adapters (#5737) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies, including running adapter CLIs inside remote sandboxes > - The QA matrix in PAPA-316 spins up local-runtime adapters (claude/gemini/opencode) against both SSH and the new exe.dev sandbox provider, and "Test" exercises the same install + probe path the real runtime uses > - On exe.dev the QA matrix failed at three different points: SSH/sandbox secret refs would not resolve, gemini-local could not find npm, and opencode-local installed a binary that was not on the probe-shell PATH > - These are all environment-shape issues the runtime should handle, not regressions in any individual adapter, so they need to be fixed in the shared install/resolve layer before the matrix can pass > - This pull request wires the environment id through to secret-ref resolution, bootstraps npm from a portable Node tarball when the sandbox image lacks Node, and symlinks the opencode binary into a directory that non-login shells see > - The benefit is that the QA matrix passes end-to-end on exe.dev, and any future sandbox provider that ships without Node or relies on rc-file PATH wiring gets the same fixes for free ## What Changed - `server/src/services/environment-execution-target.ts`: pass the environment `id` into `resolveEnvironmentDriverConfigForRuntime` for both the sandbox and SSH branches, so `privateKeySecretRef` / sandbox-provider secret refs (e.g. exe.dev `apiKey`) can resolve against the secret store at runtime instead of throwing `Runtime secret resolution requires an environment id`. - `packages/adapter-utils/src/sandbox-install-command.ts`: extend `buildSandboxNpmInstallCommand` with an `ENSURE_NPM_PREAMBLE` that, when `npm` is missing, downloads a portable Node v22 tarball into `$HOME/.local` and sets `PAPERCLIP_NPM_BOOTSTRAPPED=1` so the install step skips sudo (sudo's `secure_path` would lose the freshly-installed `npm` in `$HOME/.local/bin`). Distro-packaged Node from apt-get is intentionally avoided because it tends to be too old to parse modern JS syntax used by `@google/gemini-cli`. - `packages/adapters/gemini-local/src/index.ts`: switch the hardcoded `npm install -g @google/gemini-cli` to `buildSandboxNpmInstallCommand`, so gemini-local picks up the same sudo-aware + npm-bootstrap behavior as the other local adapters. - `packages/adapters/opencode-local/src/index.ts`: append a step to the install command that symlinks `$HOME/.opencode/bin/opencode` into `$HOME/.local/bin`. The upstream installer only adds `~/.opencode/bin` to PATH via `~/.bashrc`, which non-login `sh -c` probe invocations do not source. - `packages/adapter-utils/src/sandbox-install-command.test.ts`: cover the new preamble plus the unchanged root/sudo/user-prefix branches. ## Verification - `cd packages/adapter-utils && npm test -- sandbox-install-command` (passes; new "bootstraps npm from a portable Node tarball when missing" case is included). - Manual: ran the in-app `Test` action against the QA matrix dev instance for `QA exe.dev Claude`, `QA exe.dev Gemini`, and `QA exe.dev OpenCode` — all three now report `status=pass` including the hello probe. `QA SSH Claude` also passes; without the environment-id fix, SSH resolution threw before the wrapper / install fixes could run. - Suggested reviewer check: re-run the matrix on a fresh exe.dev environment and confirm the install step no longer hits `npm: command not found` for gemini and the opencode probe no longer hits `opencode: command not found`. ## Risks - Low/medium. The npm bootstrap pins Node `v22.11.0` from `nodejs.org/dist`; if that URL becomes unreachable the install will fail with a clear `curl` error rather than corrupting state. The bootstrap path is only taken when `npm` is genuinely missing, so existing sandbox images that ship with Node are unaffected. - The opencode symlink uses `ln -sf` into `$HOME/.local/bin`, which is created with `mkdir -p`; idempotent on re-install. - The `id` change is a strict additive: callers previously got `undefined` and only the secret-ref code paths actually read it. No behavior change for environments without secret refs. ## Model Used - Claude (Anthropic), `claude-opus-4-7`, with extended thinking and tool use enabled. Iterated through the Paperclip QA matrix harness; no other model assisted. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots (n/a — runtime/install path only) - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-05-11 14:28:22 -07:00
Devin Foley	486fb88a15	Add Cloudflare sandbox provider plugin (#5687) ... > _Stacked on top of #5685 → #5686. Diff against master includes commits from earlier PRs in the stack — review focuses on the two new commits (`Extend sandbox callback bridge for Worker-hosted plugins` + `Add Cloudflare sandbox provider plugin`)._ ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Each agent runs in a sandbox environment, and operators choose which provider backs that sandbox — today E2B and Daytona are bundled with the platform > - Cloudflare Workers + Durable Objects + the Sandbox SDK offer a credible new option: globally distributed, cheap idle, and operator-deployable as a single Worker > - To plug it in, Paperclip needs (a) a provider plugin that speaks the `PaperclipPluginManifestV1` lifecycle and (b) a small operator-deployed Worker — the **bridge** — that adapts Paperclip's runtime RPCs to the Cloudflare Sandbox SDK > - The plugin extends the existing sandbox-callback-bridge with a `bridge.transport: "worker"` discriminator so the platform routes runtime RPCs through the Worker bridge instead of the in-process runner > - This pull request adds the plugin, the bridge Worker template, and the supporting adapter-utils + server hooks the new transport needs > - The benefit is that operators can run sandboxes on Cloudflare's edge with no new platform code beyond installing the plugin and deploying the Worker ## What Changed **Shared support (`Extend sandbox callback bridge for Worker-hosted plugins`):** - `packages/adapter-utils/src/sandbox-callback-bridge.{ts,test.ts}`: expose `expectedHostHeader` so plugin-side bridge clients can verify the canonical request envelope before forwarding. - `packages/adapter-utils/src/command-managed-runtime.{ts,test.ts}`: relax the always-fresh runner construction so callers can re-use a runner across exec calls (Worker-hosted bridges hold the runner inside a Durable Object). - `server/src/services/environment-runtime.ts` + `environment-runtime.test.ts`: route Worker-hosted bridges through the same env-shaping path as E2B and pin the `requestEnv` contract. - `server/src/services/plugin-environment-driver.ts`: thread an optional `issueId` through the runtime descriptor so bridges can scope leases to the originating issue (used by Cloudflare to map a sandbox to the issue/workflow for billing and audit). - `packages/plugins/sdk/src/protocol.ts`: add `issueId?` to `PluginEnvironmentDriverBaseParams` and the new `bridge.transport: "worker"` discriminator that the new plugin declares. - `server/__tests__/heartbeat-plugin-environment.test.ts`: pin the heartbeat path against the new runtime descriptor. **The Cloudflare plugin itself (`Add Cloudflare sandbox provider plugin`):** - `packages/plugins/sandbox-providers/cloudflare/`: plugin entry, manifest, plugin runtime (lifecycle + bridge client), config parsing, and Vitest coverage. Manifest declares `bridge.transport: "worker"` so the platform routes runtime RPCs through the bridge client. - `bridge-template/`: a Worker template the operator deploys with `wrangler`. Owns Durable Object-backed sessions (`sessions.ts`), exec/stream routes (`exec.ts`, `routes.ts`), and an HMAC auth layer (`auth.ts`) that pins the `Host` header surface. Includes the SDK-contract-correct exec implementation, lease recovery, and chunked stdout/stderr streaming. - Tests cover lease/session handoff (`bridge-template/src/exec.test.ts`, `routes.test.ts`), bridge client request shaping (`src/bridge-client.test.ts`), and end-to-end plugin behavior (`src/plugin.test.ts`) including streamed exec output. 27 tests in total. - `README.md` walks the operator through deploying the bridge Worker, registering the plugin, and configuring the runtime. ## Verification - `pnpm typecheck` - `pnpm exec vitest run --no-coverage packages/adapter-utils/src/sandbox-callback-bridge.test.ts packages/adapter-utils/src/command-managed-runtime.test.ts server/src/__tests__/environment-runtime.test.ts server/src/__tests__/heartbeat-plugin-environment.test.ts` - `(cd packages/plugins/sandbox-providers/cloudflare && pnpm test)` — 27 passing For an operator-side smoke test: 1. Deploy the bridge: `cd packages/plugins/sandbox-providers/cloudflare/bridge-template && wrangler deploy` 2. Register the plugin in your Paperclip instance, point its bridge URL at the deployed Worker, set the HMAC shared secret. 3. Create a sandbox environment whose provider is `cloudflare`, then run a Codex or Claude job against it. ## Risks - Adds a new `bridge.transport: "worker"` code path, but the existing E2B / Daytona transports go through the same shaped helpers and have explicit test coverage that pins their behavior unchanged. - The Worker bridge stores session state in a Durable Object; operator instances must be aware of the corresponding Cloudflare costs (DO requests, storage). Documented in the README. - The `issueId` plumbing is optional throughout — existing plugins that don't supply it continue to work. ## Model Used - Provider: Anthropic - Model: Claude Opus 4.7 (1M context) - Capabilities used: extended reasoning, tool use (Read/Edit/Bash/Grep) ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots — N/A, no UI change - [x] I have updated relevant documentation to reflect my changes (plugin README, bridge-template README) - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-05-11 07:33:13 -07:00
Devin Foley	b24c6909e8	Harden remote sandbox runtime probes, timeouts, and installs (#5685) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Each agent runs inside a sandbox environment so its CLI is isolated from the host > - Sandbox-backed adapter runs go through a small set of shared helpers — `ensureAdapterExecutionTargetCommandResolvable`, the sandbox callback bridge runner, and per-adapter `SANDBOX_INSTALL_COMMAND` strings > - When standing up new sandbox provider plugins, the existing helpers timed out, missed install fallbacks, or leaned on assumptions that only held for E2B > - Local adapters (`claude-local`, `codex-local`, `gemini-local`, `opencode-local`) needed slightly hardened probes so they could install themselves and validate inside *any* remote sandbox transport, not just E2B > - This pull request bundles those runtime fixes so future sandbox provider plugins inherit a working baseline > - The benefit is that adding a new sandbox provider plugin no longer requires touching adapter-utils or each local-adapter probe — the supporting infra is already correct ## What Changed - `packages/adapter-utils/src/execution-target.ts`: introduce `DEFAULT_REMOTE_SANDBOX_ADAPTER_TIMEOUT_SEC = 1800` and `resolveAdapterExecutionTargetTimeoutSec(...)`. Local and SSH adapters keep the historical "0 means no adapter timeout" behavior; sandbox-backed runs without an explicit `timeoutSec` get an explicit 30-minute default so remote installs and warm-up don't time out at the per-RPC default. Plumbed `timeoutSec` through `ensureAdapterExecutionTargetCommandResolvable` so install probes inside a sandbox honor adapter-level overrides instead of the bridge's 5-minute default. - `packages/adapters/opencode-local/src/index.ts`: switch `SANDBOX_INSTALL_COMMAND` from `npm install -g opencode-ai` to `curl -fsSL https://opencode.ai/install | bash`. The npm package reifies four large prebuilt-binary subpackages in parallel even though only one matches the host arch; on bandwidth-constrained sandboxes that blew through the 240s install budget. The official installer fetches one arch-specific binary and adds `$HOME/.opencode/bin` to PATH via `~/.bashrc`, which the sandbox-callback-bridge login-shell script already sources. - `packages/adapters/{claude,codex,gemini,opencode}-local/`: harden remote-target probes — pass `--skip-git-repo-check` for Codex when probing outside a repo, normalize permission flags for Claude, and add `*.remote.test.ts` coverage that exercises the remote-sandbox path explicitly for each adapter. - `packages/adapter-utils/src/sandbox-install-command.{ts,test.ts}` (new): add `buildSandboxNpmInstallCommand` helper. `server/src/adapters/registry.ts` + new `server/src/__tests__/adapter-registry.test.ts`: wire adapter install commands so they fall back to a writable `$HOME/.local` prefix when global install isn't available. - `server/src/__tests__/plugin-worker-manager.test.ts` + new `server/src/__tests__/fixtures/plugin-worker-delayed.cjs`: pin per-call timeout overrides so plugin worker exec calls honor the caller's timeout instead of the worker's default. ## Verification - `pnpm typecheck` - `pnpm exec vitest run --no-coverage packages/adapter-utils/src/execution-target-sandbox.test.ts packages/adapter-utils/src/sandbox-install-command.test.ts` - `pnpm exec vitest run --no-coverage server/src/__tests__/plugin-worker-manager.test.ts server/src/__tests__/adapter-registry.test.ts server/src/__tests__/claude-local-adapter-environment.test.ts server/src/__tests__/claude-local-execute.test.ts server/src/__tests__/gemini-local-adapter-environment.test.ts` - `pnpm exec vitest run --no-coverage packages/adapters/codex-local/src/server/test.remote.test.ts packages/adapters/opencode-local/src/server/test.remote.test.ts packages/adapters/codex-local/src/server/codex-args.test.ts packages/adapters/codex-local/src/server/execute.remote.test.ts packages/adapters/gemini-local/src/server/execute.remote.test.ts` All passing locally. ## Risks - Touches shared `adapter-utils` and several `*-local` adapters. The 30-minute default applies only when both (a) the target is `remote+sandbox` and (b) no `timeoutSec` is configured — local + SSH paths are unchanged. New test coverage was added alongside each behavior change to pin the contracts. - Switching OpenCode's install command to the official installer is a behavior change for any operator running OpenCode inside a remote sandbox. Local installs are unaffected (the `SANDBOX_INSTALL_COMMAND` only runs when an adapter is being installed inside a sandbox). - Low risk overall — no migrations, no API surface change. ## Model Used - Provider: Anthropic - Model: Claude Opus 4.7 (1M context) - Capabilities used: extended reasoning, tool use (Read/Edit/Bash/Grep), no code execution beyond local repo commands ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots — N/A, no UI change - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-05-11 00:31:54 -07:00
Devin Foley	534aee66ae	Add cursor_cloud adapter for Cursor SDK + Cloud Agents API v1 (#5664) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - There are many adapter types, one per agent-runtime product (Claude, Codex, OpenCode, Cursor local CLI, etc.) > - Cursor shipped a public TypeScript SDK on 2026-04-29 that exposes Cursor's full hosted-agent platform (cloud VMs, harness, MCP, skills, hooks) > - Paperclip had no first-class adapter for this — agents that wanted to use Cursor's managed cloud runtime had to fall back to the local CLI adapter, which loses the cloud session, streaming, and durable run model > - This PR adds a new `cursor_cloud` adapter built directly on `@cursor/sdk`, with Paperclip's heartbeat mapped to Cursor's durable-agent + per-run model > - The benefit is that any Paperclip agent can now drive a Cursor cloud agent across heartbeats with native session reuse, streaming, and cancellation, while Paperclip remains the source of truth for issue/task state ## What Changed - New built-in adapter package `packages/adapters/cursor-cloud` (15 files, ~1.7k LOC) backed by `@cursor/sdk` ^1.0.12 - `src/server/execute.ts` — SDK-first lifecycle: `Agent.create` / `Agent.resume` / `Agent.getRun` / `agent.send` / `run.stream` / `run.wait`, with session reuse keyed on the (runtime env type, env name, repo set) tuple - `src/server/session.ts` — codec for `cursorAgentId` + `latestRunId` + repo metadata, persisted in `runtime.sessionParams` - `src/server/test.ts` — environment probe via `Cursor.me()` and optional model validation via `Cursor.models.list()` - `src/ui/parse-stdout.ts` + `src/cli/format-event.ts` — normalize Cursor SDK message types (`status`, `thinking`, `assistant`, `user`, `tool_call`, `tool_result`, `result`) into Paperclip transcript events for the UI and CLI - Registrations: `packages/shared/src/constants.ts`, `packages/adapter-utils/src/session-compaction.ts`, `server/src/adapters/{registry,builtin-adapter-types}.ts`, `ui/src/adapters/{registry,adapter-display-registry}.ts` + `ui/src/adapters/cursor-cloud/index.ts`, `cli/src/adapters/registry.ts`, plus workspace deps in `cli`/`server`/`ui` `package.json` - `ui/src/components/AgentConfigForm.tsx` — hide local-Cursor `mode`/thinking-effort field for `cursor_cloud` (different config surface) - 11 vitest tests covering execute paths (fresh create, matching-resume, active-run reattach, non-finished result), session codec round-trip, transcript parsing, and config building ## Verification Reviewer steps: ```bash pnpm install pnpm --filter @paperclipai/adapter-cursor-cloud typecheck # → clean pnpm vitest run packages/adapters/cursor-cloud # → 11/11 passing ``` End-to-end check against a real Cursor cloud agent (requires `CURSOR_API_KEY` and Cursor GitHub-app install on the target repo): 1. Create a `cursor_cloud` agent in Paperclip with `repoUrl` set to the test repo, `repoStartingRef: main`, and `env.CURSOR_API_KEY` set 2. Trigger a heartbeat → adapter calls `Agent.create({ cloud: { env: { type: "cloud" }, repos: [...] } })`, streams events, terminates on `finished` 3. Trigger a second heartbeat → adapter calls `Agent.resume` or `agent.send` follow-up depending on prior-run state, reusing `cursorAgentId` 4. The Paperclip UI/CLI transcript reflects Cursor `status` / `thinking` / `assistant` events as they stream 5. Cancellation from Paperclip maps to `run.cancel()` or Cloud API v1 `cancelRun` for cross-heartbeat cancellation A direct-SDK smoke run against a real repo (devinfoley/my_test_project @ main) confirmed: `Cursor.me()` ok → `Agent.create` → `agent.send` → `run.stream()` (30 events) → terminal status `finished` in ~11s. ## Risks - **New adapter, additive only.** No existing adapter or registry is replaced; current `cursor` local-CLI adapter is untouched. Default behavior of any existing agent is unchanged. - **External dependency on `@cursor/sdk`.** Cursor's SDK is v1.0.x and may evolve. Mocked unit tests cover the public surface used here; if the SDK breaks compatibility we update the adapter independently. - **Cost/budget.** `cursor_cloud` runs on Cursor's billed cloud VMs; operators must understand they are spending money outside Paperclip's budget controls when they enable this adapter. Same shape as other API-billed adapters. - **No webhook support in V1.** The SDK already provides stream/wait/cancel/reattach, so V1 does not require a public callback URL. If a future use case needs out-of-band wakes, we add a Cloud API v1 webhook bridge as a separate change. This is called out in the issue plan document. - **Lockfile.** Per repo policy, `pnpm-lock.yaml` is intentionally not in this PR — CI's lockfile workflow will update it on merge given the manifest changes. ## Model Used - Provider: Anthropic Claude (via Claude Code / Paperclip `claude_local` adapter) - Model: `claude-opus-4-7` (Claude Opus 4.7), knowledge cutoff January 2026 - Mode: standard tool-use with extended reasoning - Context: ~200k token window - Capabilities used: code generation, multi-file edits, shell/test execution, GitHub PR workflow ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass (11/11 in `packages/adapters/cursor-cloud`) - [x] I have added or updated tests where applicable (4 new test files, 11 cases) - [ ] If this change affects the UI, I have included before/after screenshots (the only UI change is hiding the local-Cursor mode field on the `cursor_cloud` adapter — happy to attach a screenshot if the reviewer wants one) - [x] I have updated relevant documentation to reflect my changes (issue plan document supersedes the pre-SDK design; tracked in PAPA-203) - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-05-10 17:21:04 -07:00
Dotta	0096b56a1c	[codex] Add LLM Wiki plugin host support (#5597) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies. > - The plugin system needs host contracts and runtime support before large plugins can integrate cleanly. > - The source branch mixed the LLM Wiki package with supporting host/runtime work, managed plugin skills, root-level storage spaces, and a bookmarks reference plugin. > - [PAP-9173](/PAP/issues/PAP-9173) asked for the current branch to be split by file boundary: plugin package separately from everything else. > - [PAP-9188](/PAP/issues/PAP-9188) clarified that LLM Wiki may have plugin-local spaces, but Paperclip core should not reorganize top-level local storage into spaces. > - Follow-up review clarified that the bookmarks example should not ship in this PR either. > - This pull request contains the non-`packages/plugins/plugin-llm-wiki/` host/runtime work, keeps runtime state under the selected Paperclip instance root, and no longer includes the bookmarks example. ## What Changed - Added/updated plugin host contracts, SDK types, worker RPC plumbing, managed plugin skill support, and related server tests. - Removed the bookmarks example plugin package and its bundled-example/workspace references. - Removed the root-level local spaces CLI/migration surface and restored instance-root runtime defaults for config, db, logs, storage, secrets, workspaces, projects, and adapter homes. - Replaced shared root `space-paths` helpers with `home-paths` helpers for core runtime storage. - Tightened stranded recovery unique-conflict detection so concurrent recovery scans reuse the raced recovery issue when Postgres errors are wrapped. - Kept `packages/plugins/plugin-llm-wiki/` out of this PR diff; plugin-local spaces remain in the stacked plugin-only PR. ## Verification - `pnpm exec vitest run cli/src/__tests__/data-dir.test.ts cli/src/__tests__/home-paths.test.ts cli/src/__tests__/onboard.test.ts packages/shared/src/home-paths.test.ts packages/db/src/runtime-config.test.ts server/src/__tests__/agent-instructions-service.test.ts server/src/__tests__/claude-local-execute.test.ts server/src/__tests__/codex-local-execute.test.ts` - `pnpm exec vitest run packages/db/src/runtime-config.test.ts` - `pnpm exec vitest run server/src/__tests__/plugin-routes-authz.test.ts` - `pnpm --filter @paperclipai/server typecheck` - `pnpm exec vitest run server/src/__tests__/heartbeat-process-recovery.test.ts -t "reuses the raced stranded recovery issue"` skipped locally because embedded Postgres did not initialize on this macOS temp host; the code path was typechecked and is covered by Linux CI. - Boundary check: no core references remain for `PAPERCLIP_SPACE_ID`, `spaces migrate-default`, `@paperclipai/shared/space-paths`, `registerSpacesCommands`, or the removed bookmarks example. - Previous PR head `4f23e034` had green GitHub checks: `verify`, all four serialized server shards, `e2e`, `Canary Dry Run`, `policy`, Snyk, and `Greptile Review`. Current head `582f466d` is re-running checks after the bookmarks deletion. ## Risks - Plugin host changes touch shared runtime paths, so regressions would most likely appear in adapter startup, plugin loading, or local dev path defaults. - Removing the bookmarks example also removes one demonstration of plugin database namespaces plus local-folder persistence; remaining plugin examples still cover bundled example discovery and plugin host flows. - The plugin package itself is intentionally deferred to the stacked plugin-only PR, where LLM Wiki plugin-local spaces live. - Existing installs that tested the transient root-level spaces CLI should stop using it; this PR intentionally removes that unsupported migration surface before merge. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI GPT-5 Codex via Codex CLI, tool use and local code execution enabled; context window not exposed. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass, except where noted above for host-specific embedded Postgres initialization - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge Stacked follow-up: PR #5592 contains only `packages/plugins/plugin-llm-wiki/` and targets this branch. --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-05-10 07:34:12 -05:00
Dotta	778e775c35	Add secrets provider vaults and remote import (#5429) ... ## Thinking Path > - Paperclip orchestrates AI-agent companies and needs secrets handling to work across local development, hosted operators, and governed agent execution. > - The affected subsystem is the company-scoped secrets control plane: database schema, server services/routes, CLI workflows, and the Secrets settings UI. > - The gap was that secrets were local-only and operators could not manage provider vaults or import existing remote references without exposing plaintext. > - This branch adds provider vault configuration plus an AWS Secrets Manager remote-import path while preserving company boundaries, binding context, and audit trails. > - I kept the PR to a single branch PR, removed unrelated lockfile/package drift, rebased the full branch onto the current `public-gh/master`, and addressed fresh Greptile findings. > - The benefit is a reviewable implementation of provider-backed secrets with focused tests covering provider selection, import conflicts, deleted secret reuse, rotation guards, and AWS signing behavior. ## What Changed - Added provider vault support for company secrets, including provider config storage, default vault handling, health checks, binding usage, access events, and remote import preview/commit. - Added an AWS Secrets Manager provider using SigV4 request signing, bounded request timeouts, namespace guardrails, cached runtime credential resolution, and external-reference linking without plaintext reads. - Added Secrets UI surfaces for vault management and remote import, plus CLI/API documentation for setup and operations. - Stabilized routine webhook secret binding paths and SSH environment-driver fixture bindings discovered during verification. - Addressed Greptile and CI findings: no lockfile/package drift, monotonic migration metadata, disabled-vault default races, soft-deleted secret hiding/recreate behavior, remove behavior with disabled vaults, soft-deleted external-reference re-import, non-active rotation guards, managed-secret soft deletion through PATCH, and per-call AWS SDK credential client churn. - Rebased this branch onto `public-gh/master` at `0e1a5828` and force-pushed with lease to keep this as the single PR for the branch. ## Verification - `git fetch public-gh master` - `git rebase public-gh/master` - `git diff --name-only public-gh/master...HEAD | grep '^pnpm-lock\.yaml$' || true` confirmed `pnpm-lock.yaml` is not in the PR diff. - Confirmed migration ordering: master ends at `0081_optimal_dormammu`; this PR adds `0082_dry_vision` and `0083_company_secret_provider_configs`. - Inspected migrations for repeat safety: new tables/indexes use `IF NOT EXISTS`; foreign keys are guarded by `DO $$ ... IF NOT EXISTS`; column additions use `ADD COLUMN IF NOT EXISTS`. - `pnpm -r typecheck` passed before the Greptile follow-up commits. - `pnpm test:run` ran the full stable Vitest path before the Greptile follow-up commits; it completed with 3 timing-related failures under parallel load: `codex-local-execute.test.ts`, `cursor-local-execute.test.ts`, and `environment-service.test.ts`. - `pnpm --filter @paperclipai/server exec vitest run src/__tests__/codex-local-execute.test.ts src/__tests__/cursor-local-execute.test.ts src/__tests__/environment-service.test.ts` passed on targeted rerun (`24/24`). - `pnpm build` passed before the Greptile follow-up commits. Vite reported existing chunk-size/dynamic-import warnings. - After Greptile follow-up commits: `pnpm --filter @paperclipai/server exec vitest run src/__tests__/secrets-service.test.ts` passed (`26/26`). - After Greptile follow-up commits: `pnpm --filter @paperclipai/server exec vitest run src/__tests__/aws-secrets-manager-provider.test.ts src/__tests__/secrets-service.test.ts` passed (`39/39`). - After Greptile follow-up commits: `pnpm --filter @paperclipai/server typecheck` passed. - Captured Storybook screenshots from `ui/storybook-static` for visual review. - Latest PR checks on `5ca3a5cf`: `policy`, serialized server suites 1/4-4/4, `Canary Dry Run`, `e2e`, `security/snyk`, and `Greptile Review` pass; aggregate `verify` is still registering the completed child checks. - Greptile review loop continued through the latest requested pass; all Greptile review threads are resolved and the latest `Greptile Review` check on `5ca3a5cf` passed with 0 comments added. ## Screenshots Before: the provider-vault and remote-import surfaces did not exist on `master`; these are after-state screenshots from the Storybook fixtures.    ## Risks - Migration risk: this adds new secret provider tables and extends existing secret rows. The migrations were checked for monotonic ordering and idempotent guards, but reviewers should still inspect upgrade behavior carefully. - Provider risk: AWS support uses direct SigV4 requests. Automated tests cover signing, request timeouts, vault-config selection, namespace guardrails, pending-version archival, sanitized provider errors, and service-level cleanup paths. A real-vault AWS smoke test remains deployment validation for an operator with AWS credentials rather than an unverified merge blocker in this local branch. - UI risk: the Secrets page and import dialog are large new surfaces; screenshots are included above for reviewer inspection. - Verification risk: the full local stable test command hit parallel-load timing failures, although the exact failed files passed when rerun directly. - Operational risk: remote import intentionally avoids plaintext reads; operators must understand that imported external references resolve at runtime and may fail if AWS permissions change. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5 coding agent with local shell/tool use in the Paperclip worktree. Exact context-window size was not exposed by the runtime. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>	2026-05-09 18:22:17 -05:00
Devin Foley	fe3904f434	Stabilize runtime probes and Codex env tests (#5445) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Adapters expose a Test action that probes the configured runtime — install, resolvability, hello — to give operators a fast yes/no on whether an environment is healthy > - The Codex test path was running its hello probe directly without going through the managed-runtime preparation that production runs use, so a healthy production setup could still report a probe failure > - The plugin worker manager wasn't surfacing terminated workers cleanly, leaving the runtime probe waiting on a dead worker until the request timed out > - This pull request routes the Codex test probe through `prepareAdapterExecutionTargetRuntime` (so it sees the same managed Codex home production sees), exposes `commandCwd` on `createCommandManagedRuntimeClient` so callers can target a per-probe directory without leaking the workspace `remoteCwd`, and propagates plugin-worker termination as a usable error instead of a hang > - The benefit is the Codex Test action mirrors production behavior end-to-end, and probes against a terminated plugin worker fail fast instead of timing out ## What Changed - `packages/adapter-utils/src/command-managed-runtime.ts`: rename the `remoteCwd` knob to `commandCwd` so callers can target a per-probe directory without inheriting the workspace cwd; matching test coverage in `command-managed-runtime.test.ts` - `packages/adapter-utils/src/sandbox-callback-bridge.{ts,test.ts}`: small fixes to keep callback bridge stop semantics deterministic - `packages/adapters/codex-local/src/server/test.ts`: thread the Codex hello probe through `prepareAdapterExecutionTargetRuntime` + `prepareManagedCodexHome` so the probe sees the same managed home production sees; new `test.remote.test.ts` covers the remote probe path - `packages/adapters/cursor-local/src/server/execute.ts`: small probe-side cleanup that aligns with the new commandCwd contract - `server/src/services/plugin-worker-manager.ts`: surface plugin-worker termination as a structured error so callers fail fast; new `plugin-worker-terminated.cjs` fixture and `plugin-worker-manager.test.ts` cases pin the behavior ## Verification - `pnpm vitest run --no-coverage --project @paperclipai/adapter-utils --project @paperclipai/adapter-codex-local --project @paperclipai/adapter-cursor-local --project @paperclipai/server` — 1749/1750 passing (1 unrelated skip) - `pnpm typecheck` clean ## Risks Low–medium. The `remoteCwd → commandCwd` rename is a parameter renaming on an internal helper used only by adapter test/execute paths in this repo. The plugin-worker-terminated path was previously a hang; failing fast may surface latent timeouts as explicit termination errors in callers that already expected them. ## Model Used Claude Opus 4.7 (1M context) ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable — new tests cover commandCwd, plugin-worker termination, and Codex remote test path - [x] If this change affects the UI, I have included before/after screenshots — N/A (no UI) - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --- > **Stacked PR.** Sits on top of #5444 which adds the per-run runtime API surface this PR builds on. Cumulative diff against `master` includes that PR's content; the files touched by *this* PR's commit are listed under "What Changed" above. Will rebase onto `master` and force-push once #5444 merges.	2026-05-07 14:52:31 -07:00
Devin Foley	12cb7b40fd	Harden remote workspace sync and restore flows (#5444) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - When an agent runs against a remote target, Paperclip syncs the workspace out to the remote at run start and restores changes back to the local workspace at run end > - The previous restore flow naïvely overwrote local files with whatever the remote returned, so files that the remote run never touched but had timestamp/mode drift could be needlessly rewritten — and a single static `refs/paperclip/ssh-sync/imported` ref made concurrent SSH workspace exports race on the same git ref > - This pull request adds a `workspace-restore-merge` module that diffs a pre-run snapshot against the post-run remote state and only writes back files the remote actually changed; SSH workspace exports now use a per-import unique ref so concurrent runs can't trample each other > - Every adapter's execute path threads the snapshot through `prepareAdapterExecutionTargetRuntime` so the merge has the baseline it needs > - The benefit is workspace restores no longer churn untouched files, and concurrent SSH runs no longer collide on the import ref ## What Changed - `packages/adapter-utils/src/workspace-restore-merge.{ts,test.ts}`: new module — directory snapshot (kind/mode/sha256/symlink target) plus snapshot-aware merge that writes only the files the remote changed - `packages/adapter-utils/src/ssh.ts`: SSH workspace export uses a per-import unique ref (`refs/paperclip/ssh-sync/imported/<uuid>`); restore goes through the new merge helper; `ssh-fixture.test.ts` covers the unique-ref + merge paths - `packages/adapter-utils/src/sandbox-managed-runtime.ts` + `remote-managed-runtime.ts`: thread the snapshot/merge through the sandbox and SSH paths - `packages/adapter-utils/src/server-utils.{ts,test.ts}` + `execution-target.ts`: helpers for capturing the pre-run snapshot; `prepareAdapterExecutionTargetRuntime` gains required `runId` and optional `workspaceRemoteDir`, and returns the realized `workspaceRemoteDir` - Each adapter's `execute.ts` (acpx, claude, codex, cursor, gemini, opencode, pi) takes the snapshot at run start and passes it through to the runtime restore - Remote execute test mocks updated to match the new `prepareWorkspaceForSshExecution` return shape and the per-run `${managedRemoteWorkspace}` cwd subdirectory ## Verification - `pnpm vitest run --no-coverage --project @paperclipai/adapter-utils --project @paperclipai/adapter-acpx-local --project @paperclipai/adapter-claude-local --project @paperclipai/adapter-codex-local --project @paperclipai/adapter-cursor-local --project @paperclipai/adapter-gemini-local --project @paperclipai/adapter-opencode-local --project @paperclipai/adapter-pi-local` — 196/196 passing - `pnpm typecheck` clean across the workspace ## Risks Medium. The restore path now writes a strict subset of what it previously did — files the remote did not touch are no longer rewritten. If any flow was relying on a touch-without-content-change being copied back (timestamp or permission propagation only), that behavior is now skipped. Snapshot capture adds an O(N-files-in-workspace) hash pass at run start; the cost is bounded by the existing exclude list. The `runId` parameter on `prepareAdapterExecutionTargetRuntime` is now required — every in-tree caller is updated; out-of-tree adapter authors need to pass it. ## Model Used Claude Opus 4.7 (1M context) ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable — new module + every adapter execute path covered - [x] If this change affects the UI, I have included before/after screenshots — N/A (no UI) - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge	2026-05-07 14:44:45 -07:00
Dotta	68f69975a4	Harden control-plane safety and issue identifiers (#5292) ... ## Thinking Path > - Paperclip relies on issue identifiers, execution policies, and agent heartbeat rules to keep autonomous work auditable. > - Safety checks need to reject ambiguous agent handoffs, and identifier parsing needs to support Cloud tenant prefixes. > - Agent instructions also need to make final-disposition rules explicit so work does not stall in vague states. > - This pull request isolates backend correctness and governance hardening from the UI and recovery-system-notice branches. > - The benefit is safer in-review transitions, better identifier compatibility, and clearer agent operating contracts. ## What Changed - Fixed run-aware confirmation ordering and interrupted-run state cleanup. - Added Cloud tenant identity bootstrap and alphanumeric issue identifier support across shared parsing and server routes. - Guarded agent-authored `in_review` updates unless a real review path exists. - Tightened heartbeat disposition instructions in adapter utilities/default AGENTS/Paperclip skill. ## Verification - `pnpm install --frozen-lockfile` - `pnpm exec vitest run packages/shared/src/issue-references.test.ts server/src/__tests__/issue-identifier-routes.test.ts server/src/__tests__/issue-execution-policy-routes.test.ts packages/adapter-utils/src/server-utils.test.ts` initially had the first execution-policy test hit Vitest's 5s timeout under the parallel bundle while the rest passed. - `pnpm exec vitest run server/src/__tests__/issue-execution-policy-routes.test.ts --testTimeout=20000` passed with 10/10 tests. - Follow-up: `pnpm run typecheck:build-gaps` passed. - Follow-up: `pnpm --filter @paperclipai/ui typecheck` passed. - Follow-up: `pnpm vitest run server/src/__tests__/issue-comment-reopen-routes.test.ts server/src/__tests__/company-portability.test.ts server/src/__tests__/costs-service.test.ts` passed. - Follow-up: `pnpm vitest run ui/src/context/LiveUpdatesProvider.test.ts ui/src/lib/issue-chat-messages.test.ts ui/src/lib/issue-reference.test.ts ui/src/lib/issue-timeline-events.test.ts` passed. ## Risks - Medium control-plane risk: in-review update validation changes agent behavior. The error message is explicit and tests cover allowed review paths. ## Model Used - OpenAI GPT-5 Codex via Paperclip `codex_local` adapter, with shell/git/GitHub CLI tool use. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-05-06 07:49:47 -05:00
Dotta	a1b30c9f35	Add planning mode for issue work (#5353) ... ## Thinking Path > - Paperclip is a control plane for autonomous AI companies. > - Issues are the core unit of work, and issue comments are how board users and agents coordinate execution. > - Some issue conversations need to produce plans and approvals instead of immediate implementation work. > - The existing issue contract did not distinguish standard execution comments from planning-oriented issue work. > - This pull request adds an issue work-mode contract and board UI affordances for standard vs planning mode. > - The benefit is that planning-mode issues can be created, displayed, discussed, and carried through agent heartbeat context without losing the normal issue workflow. ## What Changed - Added `standard` / `planning` issue work-mode contracts across DB, shared validators/types, server issue flows, plugin protocol, and adapter heartbeat payloads. - Added an idempotent `0081_optimal_dormammu` migration for `issues.work_mode`, ordered after current `public-gh/master` migrations. - Updated heartbeat/context summaries and issue-thread interaction behavior so planning work mode is preserved when creating suggested follow-up issues. - Added UI support for planning-mode issue creation, issue rows, detail composer styling, and composer work-mode toggles. - Added focused server/shared/UI tests plus a Playwright visual verification spec for planning-mode surfaces. - Rebased the branch onto current `public-gh/master` and added durable planning-mode screenshots under `doc/assets/pap-3368/`. ## Verification - `pnpm --filter @paperclipai/db run check:migrations` - `pnpm exec vitest run --project @paperclipai/shared packages/shared/src/validators/issue.test.ts` - `pnpm exec vitest run --project @paperclipai/server server/src/__tests__/heartbeat-context-summary.test.ts server/src/__tests__/issue-thread-interactions-service.test.ts server/src/__tests__/issues-goal-context-routes.test.ts --pool=forks --poolOptions.forks.isolate=true` - `pnpm exec vitest run --project @paperclipai/ui ui/src/components/IssueChatThread.test.tsx ui/src/components/NewIssueDialog.test.tsx ui/src/components/IssueRow.test.tsx ui/src/pages/IssueDetail.test.tsx` - `pnpm exec vitest run --project @paperclipai/adapter-utils packages/adapter-utils/src/server-utils.test.ts` - `PAPERCLIP_E2E_SKIP_LLM=true npx playwright test --config tests/e2e/playwright.config.ts tests/e2e/planning-mode-visual-verification.spec.ts` ## Screenshots Desktop planning detail:  Desktop planning row:  Desktop staged standard toggle:  Mobile planning detail:  Mobile planning row:  ## Risks - Medium migration risk: this adds a non-null issue column. The migration uses `ADD COLUMN IF NOT EXISTS` so installations that applied an older branch-local migration number can still apply the final numbered migration safely. - Medium contract risk: issue payloads, plugin payloads, and adapter heartbeat payloads now include work mode; compatibility is handled by defaulting missing values to `standard`. - UI risk is moderate because composer controls changed; focused component tests and visual e2e coverage exercise standard vs planning display and toggle behavior. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5 coding agent in a local Paperclip worktree, with shell/tool use. Exact context-window size is not exposed in this runtime. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-05-06 07:01:28 -05:00
Devin Foley	50db8c01d2	Serialize sandbox callback bridge against concurrent heartbeats (#5326) ... > **Stacked PR.** This PR's branch carries cumulative content from #5324 (bridge allowlist expand) and #5325 (env sanitization) — the mutex/sha256 logic in this PR sits on top of both. Reviewers should focus on the files this PR's commit touches: `packages/adapter-utils/src/sandbox-callback-bridge.{ts,test.ts}`, `packages/adapter-utils/src/ssh.ts`, and `packages/adapter-utils/src/ssh-fixture.test.ts`. Will rebase onto `master` and force-push once both prerequisite PRs are merged. ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Each agent that runs in a sandbox or via SSH talks back to the Paperclip server through a per-lease callback bridge whose entrypoint script is uploaded to the remote > - When two heartbeats target the same agent on the same machine concurrently, both upload the bridge entrypoint and both write to the same response files — producing torn-write races: `SyntaxError: Identifier 'randomUUID' has already been declared` from a concatenated upload, `mv: cannot stat …` from colliding `.json.tmp` writes, and 0-byte commits from a truncated stdin > - This pull request serializes those operations with a POSIX `mkdir`-mutex (PID liveness check + atomic rename) at the bridge entrypoint upload, applies the same lock to the bridge response writer, forwards stdin into remote ssh commands so the entrypoint payload arrives intact, and verifies a sha256 of the upload before promoting it > - The benefit is concurrent heartbeats no longer corrupt each other's bridge state ## What Changed - `packages/adapter-utils/src/sandbox-callback-bridge.ts`: serialize entrypoint upload and response writes via POSIX `mkdir`-mutex with PID liveness; sha256 the upload before promoting via `mv`; content-skip when the existing entrypoint already matches - `packages/adapter-utils/src/ssh.ts`: forward stdin into remote ssh commands through the SSH managed runtime so `cat > "$remote_upload"` actually receives the base64-encoded entrypoint - `packages/adapter-utils/src/ssh-fixture.test.ts`: cover the stdin-forwarded SSH path - `packages/adapter-utils/src/sandbox-callback-bridge.test.ts`: cover the mutex, content-skip, sha256-verify, and atomic-rename paths ## Verification - `pnpm vitest run --no-coverage --project @paperclipai/adapter-utils` - `pnpm typecheck` clean - Manual: two parallel heartbeats targeting the same SSH agent no longer race on the bridge entrypoint or response files ## Risks Medium. Serializing previously-parallel operations adds latency on the contended path (one heartbeat waits on another), bounded by the entrypoint upload time. The mutex includes PID liveness so a crashed heartbeat doesn't deadlock subsequent ones. Sha256-verify gives a clear "torn upload" failure mode instead of silent 0-byte commits. ## Model Used Claude Opus 4.7 (1M context) ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable — tests cover mutex + sha256-verify + stdin-forwarded ssh - [x] If this change affects the UI, I have included before/after screenshots — N/A (no UI) - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge	2026-05-05 20:01:04 -07:00
Devin Foley	f6bad8f6bf	Sanitize remote execution envs at the boundary (#5325) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Adapters spawn CLIs against local, SSH, and sandbox targets, threading a runtime env through `runAdapterExecutionTargetProcess` and the SSH/sandbox runners > - Host identity vars (HOME, TMPDIR, XDG_*, NVM_DIR, PATH) routinely leak into the env we send to remote targets — sometimes via test probes, sometimes via runtime config — and break sandboxed/SSH'd CLIs whose own profiles set those values correctly > - The sanitization logic existed but lived alongside other helpers in `server-utils.ts` and was applied piecemeal at adapter callsites, so it was easy to bypass > - This pull request lifts the sanitization into a standalone `remote-execution-env.ts`, applies it at the SSH and sandbox runtime boundary so every remote spawn goes through it, and removes the duplicated callsite-level filtering > - The benefit is identity-bound host env stops leaking across SSH/sandbox transports regardless of which adapter calls in ## What Changed - `packages/adapter-utils/src/remote-execution-env.ts`: new module — single source of truth for which env keys are identity-bound and how to strip them when the value matches the host's value - `packages/adapter-utils/src/server-utils.ts`: remove the inline sanitization (now in `remote-execution-env.ts`) - `packages/adapter-utils/src/execution-target.ts`: apply sanitization at the sandbox runtime boundary - `packages/adapter-utils/src/ssh.ts`: apply sanitization at the SSH spawn boundary - `packages/adapters/opencode-local/src/server/test.ts`: drop now-redundant callsite filtering - `packages/adapters/pi-local/src/server/test.ts`: drop now-redundant callsite filtering - New tests `execution-target.test.ts` and `execution-target-sandbox.test.ts` cover the sanitizer flow at both transports, including positive cases (host-shaped path stripped) and explicit-override preservation ## Verification - `pnpm vitest run --no-coverage --project @paperclipai/adapter-utils --project @paperclipai/adapter-opencode-local --project @paperclipai/adapter-pi-local` - `pnpm typecheck` clean ## Risks Low–medium. The sanitization is now applied at one layer (boundary) instead of N (callsites), so behavior is more consistent. Any adapter that previously relied on a leaked host var landing on the remote shell would now see it stripped — but those reliances were what this change exists to fix. ## Model Used Claude Opus 4.7 (1M context) ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable — new tests at both transports - [x] If this change affects the UI, I have included before/after screenshots — N/A (no UI) - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge	2026-05-05 19:30:14 -07:00
Devin Foley	36eaf9778f	Expand sandbox callback bridge allowlist to cover the documented heartbeat surface (#5324) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - When an agent runs in an e2b sandbox or other non-managed environment, it talks back to the Paperclip server through a per-lease callback bridge that proxies HTTP requests > - The bridge has an allowlist of method/path patterns it will forward; anything outside the list is rejected to keep the bridge tight > - The allowlist had drifted behind what the heartbeat documentation describes as the supported callback surface — several documented endpoints (issue updates, agent-side log emit, work-status writes) were being rejected at the bridge > - This pull request expands the allowlist to cover the documented heartbeat surface and adds tests that pin every newly-allowed pattern, so the doc and the bridge stay in sync > - The benefit is sandboxed runs no longer hit "method not allowed" / "path not allowed" rejections on the documented set of callbacks ## What Changed - `packages/adapter-utils/src/sandbox-callback-bridge.ts`: expand the method/path allowlist to match the documented heartbeat callback surface - `packages/adapter-utils/src/sandbox-callback-bridge.test.ts`: add coverage for every newly-allowed pattern, plus negative cases for patterns that should still be rejected ## Verification - `pnpm vitest run --no-coverage --project @paperclipai/adapter-utils` - `pnpm typecheck` clean - Manual: previously-rejected callbacks from sandboxed runs now succeed end-to-end ## Risks Low. The allowlist only grows; nothing previously allowed is now blocked. Tests pin both the new allowed patterns and that out-of-doc patterns stay rejected. ## Model Used Claude Opus 4.7 (1M context) ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable — new tests cover added patterns + still-rejected negatives - [x] If this change affects the UI, I have included before/after screenshots — N/A (no UI) - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge	2026-05-05 19:30:11 -07:00
Devin Foley	9578dc3da7	Wire per-adapter sandbox install commands through test and execute paths (#5280) ... > **Stacked PR.** Sits on top of the e2b sandbox chain — #5278 (stdin staging) and #5279 (honest-resolvability + login-profiles). The cumulative diff against `master` includes both of those PRs' content; the files touched by *this* PR's commit are the new `maybeRunSandboxInstallCommand` helper in `packages/adapter-utils/src/execution-target.ts` and the per-adapter `index.ts`/`server/test.ts`/`server/execute.ts` wiring under `packages/adapters/{claude,codex,cursor,gemini,opencode,pi}-local/`. The honest resolvability check from #5279 is what gives this PR's install command a meaningful "did it actually land on PATH" follow-up. ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Sandbox execution targets are ephemeral — each fresh lease starts from a template image that may or may not have the agent CLIs preinstalled > - When a CLI isn't preinstalled, the resolvability probe fails at `command -v` and the hello probe never runs > - There's no shared mechanism for "before you probe or provision, install the CLI on this sandbox" > - This pull request adds a `SANDBOX_INSTALL_COMMAND` constant per adapter and a `maybeRunSandboxInstallCommand` helper that runs it via the existing sandbox login shell, captures structured output, and never throws (so the resolvability + hello probe still run after); each adapter's `test()` and `execute()` share the constant so the two callsites can't drift > - The benefit is a fresh sandbox lease without a preinstalled CLI now installs it once via `sh -lc` before the resolvability probe and before managed-runtime provisioning, with a uniform `<adapter>_install_command_run` check on the test report ## What Changed - `packages/adapter-utils/src/execution-target.ts`: add `AdapterSandboxInstallCommandCheck` and `maybeRunSandboxInstallCommand` (runs the install via existing sandbox shell, captures exit/stdout/stderr, returns a structured info/warn check, never throws) - Add `SANDBOX_INSTALL_COMMAND` to each adapter's `index.ts` so `test()` and `execute()` share a single source of truth - Wire each of the 6 affected adapter `testEnvironment()`s to call `maybeRunSandboxInstallCommand` before `ensureAdapterExecutionTargetCommandResolvable` - Pass `installCommand: SANDBOX_INSTALL_COMMAND` through `prepareAdapterExecutionTargetRuntime` in each adapter's `execute()` - Per-adapter install commands use npm globals where possible so binaries land on a PATH segment the template already exports: - claude → `npm install -g @anthropic-ai/claude-code` - codex → `npm install -g @openai/codex` - cursor → `curl https://cursor.com/install -fsS | bash` - gemini → `npm install -g @google/gemini-cli` - opencode → `npm install -g opencode-ai` - pi → `npm install -g @mariozechner/pi-coding-agent` SSH and local targets ignore `installCommand` (SSH runtime takes no such param; local short-circuits before runtime prep), so this is a no-op for non-sandbox environments. ## Verification - `pnpm typecheck` clean - `pnpm vitest run --no-coverage --project @paperclipai/adapter-utils` and per-adapter projects pass - Manual sandbox matrix (claude, codex, cursor, gemini, opencode, pi) — each goes `install_command_run → resolvable → hello_probe_passed` (Codex and Pi land on `hello_probe_auth_required`, which is the configured-credentials problem, not an install issue) - SSH no-regression: SSH Claude still passes; the helper short-circuits on non-sandbox targets ## Risks Medium — adds a network/CPU cost (npm install / curl) on every fresh sandbox lease. Cost is bounded (one-time per lease, typically tens of seconds for npm globals), and the helper never throws so a failing install still lets the report run resolvability and hello probes. If a sandbox image already has the CLI, the install is an idempotent reinstall. ## Model Used Claude Opus 4.7 (1M context) ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots — N/A (no UI) - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge	2026-05-05 08:29:28 -07:00
Devin Foley	af9386f879	Run a real command-v probe and source login profiles before exec in e2b sandboxes (#5279) ... > **Stacked PR.** Sits on top of #5278 (`e2b/stage-stdin-to-temp-file`) which ships the stdin-staging fix this builds on. The cumulative diff against `master` includes that PR's content; the files touched by *this* PR's commit are `packages/adapter-utils/src/execution-target.ts`, `packages/plugins/sandbox-providers/e2b/src/plugin.ts`, and `packages/plugins/sandbox-providers/e2b/src/plugin.test.ts`. ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - The adapter Test flow does an "is the command resolvable?" probe before running the hello probe so the report distinguishes "binary not installed" from "binary errored" > - For sandbox targets, that resolvability check was a no-op early-return — every sandboxed adapter test reported "Command is executable" regardless of whether the binary existed > - That made the resolvability check disagree with the hello probe in a way that looked like a PATH bug, when it was actually a missing CLI > - Separately, the e2b spawn used `sandbox.commands.run` with a non-login non-interactive shell whose PATH did not include npm-globals, nvm shims, or anything else the template installs via `.profile`/`.bashrc` > - This pull request makes the resolvability check honest by running a real `command -v` invocation through the sandbox runner, and aligns the e2b spawn with SSH by sourcing login profiles before `exec env KEY=val <cmd>` > - The benefit is the e2b sandbox spawn agrees with the hello probe and finds CLIs at template-installed paths ## What Changed - `packages/adapter-utils/src/execution-target.ts`: add `ensureSandboxCommandResolvable` that runs `command -v <cli>` through the sandbox runner; replace the early-return in `ensureAdapterExecutionTargetCommandResolvable` for sandbox targets - `packages/plugins/sandbox-providers/e2b/src/plugin.ts`: replace `buildCommandLine` with `buildLoginShellScript` (sources `/etc/profile`, `~/.profile`, `~/.bash_profile`, `~/.bashrc`, `~/.zprofile`, and nvm.sh before `exec env KEY=val <cmd>`); env vars are interpolated inline so user-configured adapter env always wins over profile-exported values; drop the now-unused `envs:` SDK option - `plugin.test.ts` updated for the login-shell wrapping ## Verification - `pnpm vitest run --no-coverage --project @paperclipai/sandbox-e2b` — 17/17 plugin tests pass - `pnpm vitest run --no-coverage --project @paperclipai/adapter-utils` clean - `pnpm typecheck` clean - Manual: previously every sandboxed adapter said "Command is executable" then the hello probe failed with "exec: not found". After this change, missing CLIs surface honestly at the resolvability step. SSH no-regression: SSH Claude probe still passes. ## Risks Medium — sandbox adapter Test reports will start failing at the resolvability step for environments where the CLI was never actually installed. This was always the real state; the previous "Command is executable" message was incorrect. Operators should expect previously-green-but-broken sandbox environments to report accurately. ## Model Used Claude Opus 4.7 (1M context) ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable — `plugin.test.ts` updated for the login-shell wrapping - [x] If this change affects the UI, I have included before/after screenshots — N/A (no UI) - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge	2026-05-05 08:21:37 -07:00
Devin Foley	6c090f84a9	Strip inherited host shell env from SSH remote execution (#5142) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Agents executing on remote SSH hosts receive an env map built from the host > process's env plus per-run additions like `PAPERCLIP_API_KEY`, > `PAPERCLIP_RUN_ID`, etc. > - The env map currently includes inherited host vars by default, including > identity-bound ones like `PATH`, `HOME`, `USER`, `NVM_DIR`, `XDG_*` — > variables whose values are meaningful only on the host they came from > - Sending the host's `PATH` (containing host-only directories like a local > nvm install path) to a remote SSH box overrides the remote's actual `PATH` > and breaks command resolution. Same hazard for `HOME` (commands looking for > config files end up in a non-existent dir), `USER` (writes go to the wrong > path), etc. > - This PR adds `sanitizeSshRemoteEnv()` that drops inherited identity-bound > vars when their value matches the host process's value. Explicitly-set > values pass through untouched, so callers that genuinely want to override > remote `PATH` etc. still can — but accidental leakage from > `process.env` is filtered. > - The benefit is that SSH remote execution stops corrupting the remote > shell's environment with host-shaped paths, so commands resolve correctly > against the remote PATH and config files land in the remote `HOME` ## What Changed - New `sanitizeSshRemoteEnv(env, inheritedEnv = process.env)` in `packages/adapter-utils/src/server-utils.ts`. The identity-bound key set is: - `PATH`, `HOME`, `PWD`, `SHELL`, `USER`, `LOGNAME` - `NVM_DIR`, `TMPDIR`, `TMP`, `TEMP` - `XDG_CONFIG_HOME`, `XDG_CACHE_HOME`, `XDG_DATA_HOME`, `XDG_STATE_HOME`, `XDG_RUNTIME_DIR` For any key in this set, the entry is dropped iff the env value equals the inherited (host process) value. Other keys pass through unchanged. - `readEnvValueCaseInsensitive(...)` helper handles Windows-style case-insensitive env var lookups. - Wired into `resolveSpawnTarget(...)` for the SSH transport. Sandbox and local paths are unaffected. - Tests added in `server-utils.test.ts` (~50 lines) covering: matching keys filtered, mismatched keys preserved, non-identity keys passed through, case insensitivity. ## Verification - `pnpm --filter @paperclipai/adapter-utils test -- server-utils` - Manual QA: run any adapter against an SSH-backed environment, confirm remote command resolution works (e.g. `node`, `npm`, the adapter's CLI) and config files land in the remote user's `HOME`. Compare to the prior behaviour by transiently re-introducing the inherited `PATH` and watching commands fail with `command not found`. ## Risks - Behavioural shift: SSH remote execution previously passed inherited host env vars verbatim. Code that relied on that (e.g. a remote command somehow expecting the host's `PATH`) will see different behaviour. None of the adapter code in this repo has such a dependency. - Edge case: if a caller explicitly sets `PATH` to the same value as the host's `PATH` (literally — same exact string), the sanitizer drops it as a leak. In practice no caller constructs the env this way. - Windows host: case-insensitive lookup handles `Path` vs `PATH` correctly. Tested. ## Model Used - OpenAI GPT-5.4 (reasoning effort: high) via Codex CLI - Provider: OpenAI - Used to author the code changes in this PR ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots — N/A - [ ] I have updated relevant documentation to reflect my changes — N/A - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge	2026-05-03 18:36:13 -07:00
Devin Foley	90631b09b3	Let adapters declare runtime command spec for remote provisioning (#5141) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies, running adapter > commands like `claude`, `codex`, `pi` either locally or on remote runtimes > (SSH hosts, sandboxes, etc.) > - On a fresh remote runtime — particularly an ephemeral sandbox — the > adapter's CLI may not be installed yet. Today operators handle this via > external configuration (e.g. a project-level `provisionCommand` shell > script) that has to know about every adapter the operator might want to use > - This means every adapter has its own well-known npm package, but operators > end up writing duplicate provision shell scripts that paste together > `npm install -g @anthropic-ai/claude-code`, `npm install -g @openai/codex`, > etc. — knowledge the adapter itself already has > - This PR moves that knowledge into the adapter modules: each adapter declares > how its runtime command should be detected and (if applicable) installed > via `getRuntimeCommandSpec(config)`. The execution path runs the adapter's > own install command on remote sandbox targets before launching, so a fresh > sandbox bootstraps itself instead of requiring a hand-written provision script > - The benefit is fewer footguns for operators provisioning remote runtimes, > and a clean place for new adapters to plug in their install recipe ## What Changed - New types in `packages/adapter-utils/src/types.ts`: - `AdapterRuntimeCommandSpec` describing `command`, optional `detectCommand`, and optional `installCommand` - Optional `getRuntimeCommandSpec(config)` on `ServerAdapterModule` - Optional `runtimeCommandSpec` on `AdapterExecutionContext` so adapters receive the resolved spec at execute time - New helper `ensureAdapterExecutionTargetRuntimeCommandInstalled(...)` in `packages/adapter-utils/src/execution-target.ts` that runs the install command on remote targets when `transport === "sandbox"`. SSH and local targets are no-ops. Throws on timeout or non-zero exit so failures surface early. - Each of `claude-local`, `codex-local`, `cursor-local`, `gemini-local`, `opencode-local`, `pi-local`'s `execute.ts` now reads `ctx.runtimeCommandSpec?.installCommand` and calls the helper before launching the adapter command. - `server/src/adapters/registry.ts` declares `getRuntimeCommandSpec` for each adapter: - claude/codex/gemini/opencode/pi-local: `npm install -g <package>` recipe via a shared `buildNpmRuntimeCommandSpec` helper, with a defensive guard that only auto-installs when the configured `command` matches the well-known fallback (custom binaries are left alone). - cursor-local: declares `command` only; no auto-install (no public npm package), preserving the existing manual setup. - `server/src/services/heartbeat.ts` resolves the spec via `adapter.getRuntimeCommandSpec?.(runtimeConfig)` and passes it through to `AdapterExecutionContext`. - Tests added in `execution-target.test.ts` (~75 lines), e2b `plugin.test.ts` (~32 lines), and `environment-run-orchestrator.test.ts` (~76 lines). ## Verification - `pnpm --filter @paperclipai/adapter-utils test` - `pnpm --filter @paperclipai/server test -- environment-run-orchestrator` - `pnpm --filter @paperclipai/sandbox-providers-e2b test` - Manual QA: run an adapter (claude/codex/etc.) against a fresh sandbox-backed environment that does NOT have the adapter CLI pre-installed. Confirm the install runs once at the start of the agent run and the adapter then launches successfully. Re-run on the same sandbox; confirm the install command is idempotent and the second run starts faster. - Confirm SSH and local execution paths are unaffected (gated by `transport === "sandbox"`). ## Risks - Behavioural shift on sandbox runs: a new install step now runs at the start of every sandbox agent run for adapters with `installCommand` set. The install commands are idempotent (`if ! command -v X >/dev/null 2>&1; then npm install -g <pkg>; fi`), so this is fast on warm sandboxes. On a cold sandbox, the first run takes longer. - Operators who used the legacy project-level `provisionCommand` to install adapter CLIs can drop that part of their script; the adapter handles it now. Existing scripts continue to work — installs are idempotent. - The cursor-local adapter has no auto-install (no public npm package). Behaviour for cursor-local on sandboxes is unchanged. - New optional surface on `ServerAdapterModule`. Plugins that don't implement `getRuntimeCommandSpec` retain previous behaviour (no auto-install). ## Model Used - OpenAI GPT-5.4 (reasoning effort: high) via Codex CLI - Provider: OpenAI - Used to author the code changes in this PR ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots — N/A - [ ] I have updated relevant documentation to reflect my changes — N/A - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge	2026-05-03 18:35:36 -07:00
Devin Foley	2dce81fbf6	Add optional bridge proxy request logging via PAPERCLIP_BRIDGE_DEBUG (#5140) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Agents on remote sandboxes call back into the Paperclip control plane via a > callback bridge — the host process running the bridge proxies HTTP requests > from the sandbox to the Paperclip API > - When something goes wrong end-to-end (sandbox can't reach Paperclip, requests > timing out, malformed responses), it's hard to tell whether the bridge > processed the request, what URL/method it used, and what the upstream > responded with > - There was no built-in way to log bridge proxy traffic without modifying > adapter code or attaching a debugger > - This PR adds opt-in stdout logging of every bridge proxy request and response > (method, path, query, status), gated behind `PAPERCLIP_BRIDGE_DEBUG` so it > stays off by default > - The benefit is that operators can flip a single env var to get full visibility > into bridge traffic when debugging remote runs, without changing code ## What Changed - `packages/adapter-utils/src/execution-target.ts`: `startAdapterExecutionTargetPaperclipBridge`'s `handleRequest` now logs each proxied request and response when `PAPERCLIP_BRIDGE_DEBUG` is truthy: - `[paperclip] Bridge proxy <METHOD> <path>?<query>` before fetch - `[paperclip] Bridge proxy response <status> for <METHOD> <path>?<query>` after - Logging is no-op when the env var is unset/`"0"`/`"false"`. ## Verification - Set `PAPERCLIP_BRIDGE_DEBUG=1` in the host process env, run an agent against a sandbox-backed environment, confirm the bridge log lines appear in stdout. - Unset the env var and confirm no extra log lines appear during normal runs. ## Risks - Off-by-default, no observable change for shipping users. - When enabled, the logging is verbose — every API call from the sandbox produces 2 stdout lines. Operators should only enable it during active debugging. ## Model Used - OpenAI GPT-5.4 (reasoning effort: high) via Codex CLI - Provider: OpenAI - Used to author the code changes in this PR ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [ ] I have added or updated tests where applicable — covered by exercising the flag in dev; the underlying handleRequest behavior is unchanged - [ ] If this change affects the UI, I have included before/after screenshots — N/A - [ ] I have updated relevant documentation to reflect my changes — N/A - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge	2026-05-03 18:34:48 -07:00
Devin Foley	856c6cb192	Fix remote workspace environment shaping (#5118) ... > **Stacked PR (part 5 of 7).** Depends on: - PR #5114 - PR #5115 - PR #5116 - PR #5117 > Diff against `master` includes commits from earlier PRs in the stack — the new commit in this PR is the topmost one. ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Agents run with a Paperclip-shaped environment (`PAPERCLIP_WORKSPACE_CWD`, > worktree path, `PAPERCLIP_WORKSPACES_JSON` hints) so the CLI can locate the > correct project tree > - SSH testing reproduced a real failure: a Codex SSH run wrote to > `/tmp/paperclip-env-matrix-...` (the *host* path) instead of the realized > remote workspace at `/home/<user>/paperclip-env-matrix-ssh-claude/...` > because the adapter injected `PAPERCLIP_WORKSPACE_CWD=/tmp/...` into the > remote env > - Code review on the initial codex-only fix asked to roll the same approach > into every other SSH-capable adapter (claude, acpx, cursor, opencode, gemini, > pi) via a shared helper rather than duplicating per-adapter > - This PR adds `shapePaperclipWorkspaceEnvForExecution` in adapter-utils that, > when the execution target is remote: replaces local cwd with the realized > execution cwd, nulls out worktree path (which has no remote meaning), and > rewrites/strips `cwd` entries in workspace hints based on what was actually > synced. Every adapter calls it before invoking the remote runner > - The benefit is that remote runs see the realized remote workspace, host-local > paths stop leaking into remote env, and the rule is unit-tested in one place ## What Changed - Added `shapePaperclipWorkspaceEnvForExecution` to `packages/adapter-utils/src/server-utils.ts` with full unit coverage (`server-utils.test.ts`) - Each of acpx-local, claude-local, codex-local, cursor-local, gemini-local, opencode-local, pi-local now calls the new shaper before issuing the remote command and feeds the shaped values into `applyPaperclipWorkspaceEnv` - Per-adapter `execute.remote.test.ts` files extended to cover the new shaping behaviour: localhost paths replaced with remote cwd, foreign-cwd hints stripped, worktree path nulled out for remote targets - `acpx-local/src/server/execute.test.ts` extended with shaping coverage ## Verification - `pnpm test -- server-utils execute.remote` - `pnpm --filter @paperclipai/adapter-acpx-local test` - Manual QA reproducing the original failure: 1. Provision an E2B sandbox environment for the Paperclip QA company 2. Assign an issue to a remote-targeted claude-local agent and confirm the run starts in the correct remote cwd (no `/Users/...` path leakage in the run logs) 3. Repeat for opencode-local and pi-local ## Risks - Behavioural shift: hints whose `cwd` doesn't match the workspace cwd are now stripped on remote targets. If any adapter relied on a leaked local hint cwd, it will see a missing `cwd` instead. Reviewed all current callers — none do. - Adds a small per-run cost (path resolve + string normalisation) on every remote execution. Negligible. - Worktree path is now nulled out on remote (it has no meaning there). Adapters that previously read the value defensively will continue to work. ## Model Used - OpenAI GPT-5.4 (reasoning effort: high) via Codex CLI - Provider: OpenAI - Used to author the code changes in this PR ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots — N/A - [ ] I have updated relevant documentation to reflect my changes — N/A - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge	2026-05-03 13:17:52 -07:00
Devin Foley	076067865f	Migrate SSH environment callback to bridge (#5116) ... > **Stacked PR (part 3 of 7).** Depends on: - PR #5114 - PR #5115 > Diff against `master` includes commits from earlier PRs in the stack — the new commit in this PR is the topmost one. ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Agents executing on a remote SSH-backed environment need a way to call back into > the Paperclip control plane (run events, log streaming, signals) > - When the SSH host can't reach the Paperclip host (NAT, firewalls, or simply not > on the same network), the run silently fails or hangs — a recurring class of > failure during SSH testing > - In sandboxed environments we already solved this with a callback bridge that > tunnels back through the existing connection; SSH was the odd one out > - This PR migrates SSH execution to use the same callback bridge, so every > adapter's remote run uses one consistent reverse-channel. Per-adapter SSH glue > is deleted in favour of a shared `CommandManagedRuntimeRunner` built from the > SSH spec > - The benefit is fewer SSH-specific failure modes, a smaller code surface, and > one place to evolve the callback contract going forward ## What Changed - Added `createSshCommandManagedRuntimeRunner` in `packages/adapter-utils/src/ssh.ts` that adapts an SSH spec into a generic command-managed-runtime runner (with cwd, env, and timeout handling) - Removed `paperclipApiUrl` from `SshRemoteExecutionSpec`; the bridge URL now flows through the shared runner - Reworked `execution-target.ts` to use the SSH runner alongside sandbox runners via a unified `CommandManagedRuntimeRunner` interface - Simplified `remote-managed-runtime.ts` and `sandbox-managed-runtime.ts` to consume the shared runner abstraction - Deleted per-adapter SSH callback wiring from claude-local, codex-local, cursor-local, gemini-local, opencode-local, pi-local execute.ts files - Removed `environment-runtime-driver-contract.test.ts` (the contract is now enforced by `environment-execution-target.test.ts`) - Added/updated `execute.remote.test.ts` cases for each adapter to cover the SSH runner path ## Verification - `pnpm --filter @paperclipai/adapter-utils test` - `pnpm test -- execute.remote` (covers all six local adapters' SSH paths) - Manual QA: ran a claude-local agent against an SSH-backed environment, confirmed the agent successfully called back to `/api/agent-callback/*` endpoints during the run ## Risks - Refactor touches all six local adapters. If any adapter had subtle SSH-specific behaviour that wasn't captured in tests, it could regress. Mitigation: each adapter's `execute.remote.test.ts` was extended. - `paperclipApiUrl` removal from `SshRemoteExecutionSpec` is a breaking type change for any internal consumer. Verified no external plugins consume this type. - The new `CommandManagedRuntimeRunner` shape is a public surface in `@paperclipai/adapter-utils`; downstream plugins implementing custom runners may need updates, but no such plugins exist in this repo. ## Model Used - OpenAI GPT-5.4 (reasoning effort: high) via Codex CLI - Provider: OpenAI - Used to author the code changes in this PR ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots — N/A - [ ] I have updated relevant documentation to reflect my changes — N/A - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge	2026-05-03 12:43:52 -07:00
Devin Foley	a7b45938b7	Let sandbox providers declare shell defaults (#5114) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Agents execute in sandboxed remote environments served by pluggable sandbox > providers (E2B today, more later) > - Today every sandbox command runs under `sh -lc` regardless of what the > provider's container actually ships > - That misses bash-only shell init on E2B (which ships bash) and prevents > future providers from declaring a different default — there's no way for a > provider to say "I have bash, use it" > - This PR adds a `shellCommand` field to sandbox execution targets so providers > can declare their preferred shell ("bash" for E2B), threads it through the > sandbox-managed-runtime client, callback bridge, and execution-target shell > helper, and validates the value at the lease-metadata boundary > - The benefit is that sandbox commands run under the right shell on the right > provider, and adding new sandbox providers only needs to declare a shell > preference ## What Changed - Added `packages/adapter-utils/src/sandbox-shell.ts` exporting `preferredShellForSandbox(shellCommand)` (returns `"bash"` if input is `"bash"`, else `"sh"`) - Added `shellCommand?: "bash" | "sh" | null` to `AdapterSandboxExecutionTarget` and `CommandManagedRuntimeSpec`; threaded it through `runAdapterExecutionTargetShellCommand`, `prepareAdapterExecutionTargetRuntime`, and `startAdapterExecutionTargetPaperclipBridge` - `createCommandManagedRuntimeClient`, `prepareCommandManagedRuntime`, and `createCommandManagedSandboxCallbackBridgeQueueClient` now take an optional `shellCommand` and use `preferredShellForSandbox` to pick the shell - `startSandboxCallbackBridgeServer` accepts a `shellCommand` for its server startup, readiness probe, and stop hook - E2B sandbox plugin declares `shellCommand: "bash"` in `leaseMetadata` - `resolveEnvironmentExecutionTarget` reads `shellCommand` from lease metadata (validating against `"bash" | "sh" | null`) - `environment-runtime.ts` adds `"shellCommand"` to `INTERNAL_PLUGIN_SANDBOX_CONFIG_KEYS` so the field round-trips through internal plugin config without leaking to external plugin metadata - Updated tests in `command-managed-runtime.test.ts`, `execution-target-sandbox.test.ts`, `sandbox-callback-bridge.test.ts`, `environment-execution-target.test.ts` ## Verification - `pnpm --filter @paperclipai/adapter-utils test` - `pnpm --filter @paperclipai/server test -- environment-execution-target` - `pnpm --filter @paperclipai/sandbox-providers-e2b test` - Manual QA: boot a Paperclip instance, create an E2B-backed environment, run a claude_local agent against it, and confirm the run completes (verifies bash shell semantics flow through the callback bridge end-to-end) ## Risks - E2B sandbox commands now run under `bash -lc` instead of `sh -lc`. Bash is a strict superset for the commands we issue (no busybox-only flags in our shell scripts), so risk is low. The shellCommand field is opt-in via lease metadata — providers that don't declare it stay on `sh`. - New optional field on `CommandManagedRuntimeSpec` and `AdapterSandboxExecutionTarget`. Consumers ignoring the field retain previous behaviour (sh). - Lease metadata now carries an additional field. Existing leases without `shellCommand` resolve to `null` and fall back to sh — backwards compatible. ## Model Used - OpenAI GPT-5.4 (reasoning effort: high) via Codex CLI - Provider: OpenAI - Used to author the code changes in this PR ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots — N/A (no UI changes) - [ ] I have updated relevant documentation to reflect my changes — N/A - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge	2026-05-03 12:19:35 -07:00
Dotta	4272c1604d	Add ACPX local adapter runtime (#4893) ... ## Thinking Path > - Paperclip orchestrates AI-agent companies through a control plane that can start, supervise, and recover agent runs. > - Local adapters are the bridge between Paperclip issues and concrete agent runtimes such as Claude, Codex, and other ACP-compatible tools. > - The roadmap calls out broader “bring your own agent” and claw-style agent support, and ACPX gives Paperclip one path to normalize multiple ACP agents behind a single adapter. > - The branch needed to become one reviewable PR against current `paperclipai/paperclip:master`, without carrying stale base conflicts or generated lockfile churn. > - This pull request adds an experimental built-in `acpx_local` adapter, integrates it through the server/CLI/UI adapter surfaces, and adds regression coverage for runtime execution, skill sync, stream parsing, diagnostics, and log redaction. > - The benefit is that Paperclip can run Claude/Codex/custom ACP agents through ACPX while keeping operator configuration, skills, logging, and transcript rendering inside the existing adapter model. ## What Changed - Added `@paperclipai/adapter-acpx-local` with server execution, config schema, ACPX session handling, CLI formatting, UI config helpers, and stdout parsing. - Registered `acpx_local` across CLI, server, shared constants, UI adapter metadata, adapter capabilities, and agent creation/editing surfaces. - Added ACPX runtime execution support with persistent sessions, local-agent JWT environment handling, skill snapshots, runtime skill materialization, and isolation/security regressions. - Added ACPX adapter diagnostics and marked the adapter experimental in the UI. - Added command/env secret redaction for resolved command metadata in adapter-utils, server event storage, and the Agent Detail invocation UI. - Added Storybook coverage for ACPX config, transcript rendering, and skill states, plus PR screenshots under `docs/pr-screenshots/pap-2944/`. - Rebased the branch onto current `public-gh/master`; `pnpm-lock.yaml` is intentionally not included and there are no migration/schema changes. ## Verification - `pnpm exec vitest run packages/adapters/acpx-local/src/server/execute.test.ts packages/adapters/acpx-local/src/server/test.test.ts packages/adapters/acpx-local/src/cli/format-event.test.ts packages/adapters/acpx-local/src/ui/parse-stdout.test.ts packages/adapter-utils/src/server-utils.test.ts server/src/__tests__/redaction.test.ts server/src/__tests__/acpx-local-execute.test.ts server/src/__tests__/acpx-local-skill-sync.test.ts server/src/__tests__/acpx-local-adapter-environment.test.ts server/src/__tests__/adapter-routes.test.ts server/src/__tests__/agent-skills-routes.test.ts ui/src/adapters/metadata.test.ts` — 12 files, 87 tests passed. - `pnpm --filter @paperclipai/adapter-acpx-local typecheck` — passed. - `pnpm --filter @paperclipai/server typecheck` — passed. - `pnpm --filter @paperclipai/ui typecheck` — passed. - Confirmed PR diff does not include `pnpm-lock.yaml`, database schema files, or migrations. Screenshots:    ## Risks - Medium risk: this introduces a new built-in adapter package and touches runtime execution, adapter registration, agent config, skills, and transcript rendering. - ACPX and ACP agent behavior can vary by installed tool versions; the adapter is marked experimental to set operator expectations. - `pnpm-lock.yaml` is excluded per repository PR policy, so dependency lock refresh must be handled by the repo’s automation or maintainers. - No database migration risk: no schema or migration files changed. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex coding agent based on GPT-5, with repository tool use, shell execution, git operations, and local verification. Exact hosted context window was not exposed in this environment. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-04-30 19:57:05 -05:00
Dotta	a3de1d764d	Add cheap model profiles for local adapters (#4881) ... ## Thinking Path > - Paperclip is a control plane for autonomous AI companies, where adapters are the boundary between the board, agents, and execution runtimes. > - Local adapters currently expose a primary runtime configuration, but operators often need a cheaper model lane for routine or low-risk work. > - That cheap lane has to stay adapter-owned: runtime profile settings should not mutate the primary adapter config or bypass existing auth/secret mediation. > - Issue creation also needs an ergonomic way to request primary, cheap, or custom model behavior for a selected assignee. > - This pull request adds a first-class `cheap` model profile contract across adapter capabilities, heartbeat config resolution, agent configuration, and issue creation. > - The benefit is cheaper task execution can be configured and requested explicitly while preserving adapter boundaries, secret handling, and audit visibility. ## What Changed - Added adapter model-profile capability metadata and a `cheap` profile contract for supported local adapters. - Applied `runtimeConfig.modelProfiles.cheap.adapterConfig` during heartbeat config resolution, including requested/applied/fallback run metadata. - Added agent configuration UI for cheap model profile settings without writing those settings into primary `adapterConfig`. - Added New Issue assignee model lane controls for Primary / Cheap / Custom and request payload handling. - Added run ledger profile badges and Storybook stories for the new cheap-lane UI states. - Added tests for validators, heartbeat model profile application, permission/secret mediation, UI payload helpers, and run ledger rendering. - Added committed UI verification screenshots under `docs/pr-screenshots/pap-2837/`. - Addressed Greptile review feedback around cheap-profile defaults, shared profile types, and fallback test data. ## Verification Local: - `pnpm exec vitest run packages/shared/src/validators/issue.test.ts server/src/__tests__/adapter-registry.test.ts server/src/__tests__/agent-permissions-routes.test.ts server/src/__tests__/heartbeat-model-profile.test.ts ui/src/components/IssueRunLedger.test.tsx ui/src/lib/agent-config-patch.test.ts ui/src/lib/issue-assignee-overrides.test.ts ui/src/lib/new-agent-runtime-config.test.ts` — passed, 8 files / 103 tests. - `pnpm exec vitest run ui/src/lib/new-agent-runtime-config.test.ts ui/src/components/IssueRunLedger.test.tsx` — passed after Greptile/rebase follow-up, 2 files / 17 tests. - `pnpm --filter @paperclipai/ui typecheck` — passed after Greptile/rebase follow-up. - `pnpm -r typecheck` — passed. - `pnpm build` — passed. - `pnpm test:run` — did not complete successfully in this local worktree: it stopped in pre-existing `@paperclipai/adapter-utils` sandbox/SSH fixture suites outside this PR diff. Failures were 5s local timeouts plus `git init -b` unsupported by this machine's Git 2.21.0. The branch-specific targeted suites above passed. - Branch was fetched/rebased onto `public-gh/master`; `git rev-list --left-right --count public-gh/master...HEAD` reports `0 9`. Remote PR checks on latest head `e30bf399146451c86cee98ed528d51d33fa5af5a`: - `policy` — passed. - `verify` — passed. - `e2e` — passed. - `Greptile Review` — passed, confidence score 5/5; Greptile review threads resolved. - `security/snyk (cryppadotta)` — passed. Screenshots: - [New issue cheap lane desktop](https://github.com/paperclipai/paperclip/blob/PAP-2837-plan-cheap-model-for-adapters-that-can-support-it/docs/pr-screenshots/pap-2837/newissue-cheap-desktop.png) - [New issue custom lane desktop](https://github.com/paperclipai/paperclip/blob/PAP-2837-plan-cheap-model-for-adapters-that-can-support-it/docs/pr-screenshots/pap-2837/newissue-custom-desktop.png) - [New issue unsupported adapter desktop](https://github.com/paperclipai/paperclip/blob/PAP-2837-plan-cheap-model-for-adapters-that-can-support-it/docs/pr-screenshots/pap-2837/newissue-unsupported-desktop.png) - [Run ledger model profile badges desktop](https://github.com/paperclipai/paperclip/blob/PAP-2837-plan-cheap-model-for-adapters-that-can-support-it/docs/pr-screenshots/pap-2837/runledger-profile-badges-desktop.png) - Mobile variants are also in `docs/pr-screenshots/pap-2837/`. ## Risks - Medium: heartbeat config mediation now merges runtime model profiles into adapter configs, so adapter secret normalization and host-command restrictions must keep covering nested config paths. - Medium: the UI adds another issue creation choice; unsupported adapters must keep hiding the cheap lane and preserve primary behavior. - Low migration risk: no database migration is included. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used OpenAI Codex coding agent using GPT-5-class reasoning with repo tool use and command execution. Exact served model/context window was not exposed by the runtime. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> Co-authored-by: Claude Opus 4.7 <noreply@anthropic.com>	2026-04-30 15:32:04 -05:00
Devin Foley	a4ac6ff133	Add sandbox callback bridge for remote environment API access (#4801) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Agents can run inside sandboxed environments like E2B, which are isolated from the host network > - Sandboxed agents need to call back to the Paperclip API to report progress, post comments, and update issue status > - But sandbox environments cannot reach the Paperclip server directly because they run in isolated network namespaces > - This PR adds a callback bridge that proxies API requests from the sandbox to the Paperclip server, running as a local HTTP server on the host that forwards authenticated requests > - The bridge is started automatically when an adapter launches a sandbox execution, and torn down when the run completes > - The benefit is sandboxed agents can interact with the Paperclip API without requiring network-level access to the host, enabling E2B and similar providers to work end-to-end ## What Changed - Added `sandbox-callback-bridge.ts` in `packages/adapter-utils/` — a lightweight HTTP bridge server that accepts requests from sandbox environments and proxies them to the Paperclip API with authentication - Added request validation and security policy: the bridge only forwards requests to the configured API URL, validates content types, enforces size limits, and rejects non-API paths - Wired the bridge into all remote adapter execute paths (claude, codex, cursor, gemini, pi) — the bridge starts before the agent process and the bridge URL is passed via environment variables - Updated `environment-execution-target.ts` to prefer the explicit API URL from environment lease metadata for sandbox callback routing - Fixed Claude sandbox runtime setup to work with the bridge configuration - Added comprehensive test coverage for bridge request handling, policy enforcement, and sandbox execution integration - Fixed browser bundling — the bridge module is excluded from the frontend bundle via the adapter-utils index export ## Verification - `pnpm test` — all existing and new tests pass, including bridge unit tests and sandbox execution integration tests - `pnpm typecheck` — clean - Manual: configure an E2B environment, run an agent task, verify the agent can post comments and update issue status through the bridge ## Risks - Medium. This is a new network-facing component (HTTP server on localhost). The security policy restricts forwarding to the configured API URL only and validates all requests, but any proxy introduces attack surface. The bridge binds to localhost only and is scoped to the lifetime of a single agent run. ## Model Used Codex GPT 5.4 high via Paperclip. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge	2026-04-29 16:37:34 -07:00
Devin Foley	f9cf1d2f6a	Add cursor sandbox support and fix SSH workspace sync (#4803) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Agents can run inside sandboxed environments like E2B, or on remote hosts via SSH > - The cursor adapter needs to resolve `cursor-agent` inside sandbox environments where it's installed in `~/.local/bin` > - But when using the default `agent` command on a sandbox target, the adapter didn't know to look in `~/.local/bin/cursor-agent`, causing "command not found" failures > - Additionally, repeated SSH runs failed because `git checkout` during workspace sync conflicted with leftover `.paperclip-runtime` files from previous runs > - This PR adds sandbox-aware command resolution for cursor and fixes the SSH workspace sync conflict > - The benefit is cursor works in E2B sandboxes out of the box, and repeated SSH runs don't fail on workspace sync ## What Changed - `cursor-local`: Added `prepareCursorSandboxCommand` — on sandbox targets, reads the remote `$HOME`, prepends `~/.local/bin` to PATH, and prefers `~/.local/bin/cursor-agent` when the default command is requested; tightened the sandbox command probe to validate the binary exists before launching; preserves explicit custom command overrides - `adapter-utils/ssh.ts`: Added `--force` to git checkout in SSH workspace sync to handle `.paperclip-runtime` untracked file conflicts from previous runs ## Verification - `pnpm test` — all existing and new tests pass, including cursor sandbox probe, sandbox execution, and custom command override tests - `pnpm typecheck` — clean - Manual: configure an E2B environment, run a cursor-local task, verify it resolves cursor-agent from the sandbox install path ## Risks - Low-medium. The `--force` flag on git checkout could discard uncommitted changes in the remote workspace, but the workspace is managed by Paperclip and should not contain user edits. ## Model Used Codex GPT 5.4 high via Paperclip. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge	2026-04-29 16:12:06 -07:00
Devin Foley	9b99d30330	Add dedicated environment settings page and test-in-environment (#4798) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Agents run inside environments (local, SSH, E2B sandbox) > - Operators need to configure and manage these environments > - But environment settings were buried inside the general company settings page, making them hard to find > - Additionally, when testing an agent from the configuration form, the test always ran locally regardless of which environment was selected > - This PR moves environments into a dedicated top-level company settings section and wires the "Test Environment" button to run inside the selected environment > - The benefit is operators can find and manage environments more easily, and the test button now validates the actual environment the agent will use ## What Changed - Added a dedicated `CompanyEnvironments` settings page with its own route and sidebar entry - Updated `CompanySettingsSidebar` and `CompanySettingsNav` to include the new environments section - Modified the agent test route (`POST /agents/:id/test`) to accept an optional `environmentId` parameter - Updated all adapter `test.ts` handlers to resolve and use the specified execution target environment - Added `resolveTestExecutionTarget` to `execution-target.ts` for remote environment test resolution with cwd fallback - Moved the "Test Environment" button and its feedback display into the `NewAgent` page footer for better UX flow ## Verification - `pnpm test` — all existing and new tests pass - `pnpm typecheck` — clean - Manual: navigate to Company Settings, confirm "Environments" appears as a top-level section - Manual: configure an agent with a non-local environment, click "Test Environment", confirm the test runs inside that environment ## Risks - Low risk. UI-only routing change for the settings page. The test-in-environment change adds an optional parameter with a local fallback, so existing behavior is preserved when no environment is specified. ## Model Used Codex GPT 5.4 high via Paperclip. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge	2026-04-29 15:56:13 -07:00
Devin Foley	d47ffa87f0	Fix CEO AGENT_HOME paths and centralize workspace env propagation (#4551) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies. > - The local adapter layer is responsible for turning Paperclip runtime context into the environment seen by the child agent process. > - The CEO onboarding bundle tells the agent where to read and write its persistent memory and fact files. > - That bundle was using `./memory/...` and `./life/...`, which only works when the process cwd happens to equal the agent home directory. > - At the same time, six local adapters each duplicated the same workspace-env propagation logic, including `AGENT_HOME`, which makes this contract easy to drift. > - This pull request fixes the CEO instructions to use `$AGENT_HOME/...` and centralizes workspace-env propagation in one shared helper with shared tests. > - The benefit is a real bug fix for agent memory paths plus a single tested contract that makes future built-in adapter work less likely to forget `AGENT_HOME`. ## What Changed - Updated `server/src/onboarding-assets/ceo/HEARTBEAT.md` to use `$AGENT_HOME/memory/...` and `$AGENT_HOME/life/...` instead of cwd-relative `./memory/...` and `./life/...`. - Added `applyPaperclipWorkspaceEnv(...)` in `packages/adapter-utils/src/server-utils.ts` to centralize `PAPERCLIP_WORKSPACE_*` and `AGENT_HOME` propagation. - Added shared helper coverage in `packages/adapter-utils/src/server-utils.test.ts` for both populated and skip-empty cases. - Switched the built-in local adapters (`claude_local`, `codex_local`, `cursor_local`, `gemini_local`, `opencode_local`, `pi_local`) over to the shared helper instead of inline env assignment blocks. ## Verification - `pnpm install` - `pnpm exec vitest run packages/adapter-utils/src/server-utils.test.ts packages/adapters/claude-local/src/server/execute.remote.test.ts packages/adapters/codex-local/src/server/execute.remote.test.ts packages/adapters/cursor-local/src/server/execute.remote.test.ts packages/adapters/gemini-local/src/server/execute.remote.test.ts packages/adapters/opencode-local/src/server/execute.remote.test.ts packages/adapters/pi-local/src/server/execute.remote.test.ts` - Result: 7 test files passed, 31 tests passed, 0 failures. ## Risks - Low risk. - The only behavioral surface is the shared env propagation refactor across six adapters; if the helper diverged from prior semantics, an adapter could miss a workspace env var. - The shared helper test plus the affected adapter execute tests reduce that risk, and the helper preserves the prior "set only non-empty strings" behavior. ## Model Used - OpenAI Codex via Paperclip `codex_local` agent runtime; tool-assisted coding workflow with shell execution, file patching, git operations, and API interaction. The exact backend model identifier and context window are not surfaced by this local runtime. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge	2026-04-26 13:57:35 -07:00
Devin Foley	91333ec86f	feat: add paperclip-dev skill with optional bundled skill support (#3854) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Agents working on the Paperclip codebase itself need guidance on dev workflows: server lifecycle, worktrees, builds, database ops, diagnostics > - There was no bundled skill covering these workflows — agents had to figure it out from scratch each time > - Additionally, not every skill should be force-installed on every agent — a dev-focused skill should be opt-in > - This PR adds a `paperclip-dev` skill with `required: false` frontmatter so it ships with Paperclip but isn't auto-installed > - The skill's PR section references canonical files (`.github/PULL_REQUEST_TEMPLATE.md`, `CONTRIBUTING.md`) instead of duplicating their content, with gated instructions that force agents to read those files before creating any PR > - The benefit is that developers (human or agent) can opt in to structured dev guidance without polluting the default agent skill set or creating drift between duplicated docs ## What Changed - Added `skills/paperclip-dev/SKILL.md` covering server management, worktree lifecycle, builds, database ops, diagnostics, agent operations, and common mistakes - The Pull Requests section uses gated, reference-based instructions — agents MUST read `.github/PULL_REQUEST_TEMPLATE.md` and `CONTRIBUTING.md` before running `gh pr create`, with a brief checklist of required section names (no content duplication) - Updated `packages/adapter-utils/src/server-utils.ts` to respect `required: false` frontmatter — optional skills are bundled but not auto-installed on agents - Added test in `server/src/__tests__/paperclip-skill-utils.test.ts` verifying that optional skills are excluded from the default install set ## Verification ```bash # Run tests pnpm test # Manual verification: create a fresh worktree without seeding npx paperclipai worktree:make test-optional-skill --no-seed cd ~/paperclip-test-optional-skill eval "$(npx paperclipai worktree env)" npx paperclipai run # Verify paperclip-dev appears in company skill library but is NOT auto-assigned # Call listPaperclipSkillEntries() — paperclip-dev should show required: false # Call resolvePaperclipDesiredSkillNames() — paperclip-dev should NOT be in the default set # Cleanup npx paperclipai worktree:cleanup test-optional-skill ``` ## Risks - Low risk. The `required` field defaults to `true` when absent, so all existing skills behave identically. Only the new `paperclip-dev` skill sets `required: false`. ## Model Used Claude Opus 4.6 (`claude-opus-4-6`) via Claude Code, with tool use and extended context. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-04-26 11:06:13 -07:00
Dotta	5a0c1979cf	[codex] Add runtime lifecycle recovery and live issue visibility (#4419)	2026-04-24 15:50:32 -05:00
Devin Foley	70679a3321	Add sandbox environment support (#4415) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies. > - The environment/runtime layer decides where agent work executes and how the control plane reaches those runtimes. > - Today Paperclip can run locally and over SSH, but sandboxed execution needs a first-class environment model instead of one-off adapter behavior. > - We also want sandbox providers to be pluggable so the core does not hardcode every provider implementation. > - This branch adds the Sandbox environment path, the provider contract, and a deterministic fake provider plugin. > - That required synchronized changes across shared contracts, plugin SDK surfaces, server runtime orchestration, and the UI environment/workspace flows. > - The result is that sandbox execution becomes a core control-plane capability while keeping provider implementations extensible and testable. ## What Changed - Added sandbox runtime support to the environment execution path, including runtime URL discovery, sandbox execution targeting, orchestration, and heartbeat integration. - Added plugin-provider support for sandbox environments so providers can be supplied via plugins instead of hardcoded server logic. - Added the fake sandbox provider plugin with deterministic behavior suitable for local and automated testing. - Updated shared types, validators, plugin protocol definitions, and SDK helpers to carry sandbox provider and workspace-runtime contracts across package boundaries. - Updated server routes and services so companies can create sandbox environments, select them for work, and execute work through the sandbox runtime path. - Updated the UI environment and workspace surfaces to expose sandbox environment configuration and selection. - Added test coverage for sandbox runtime behavior, provider seams, environment route guards, orchestration, and the fake provider plugin. ## Verification - Ran locally before the final fixture-only scrub: - `pnpm -r typecheck` - `pnpm test:run` - `pnpm build` - Ran locally after the final scrub amend: - `pnpm vitest run server/src/__tests__/runtime-api.test.ts` - Reviewer spot checks: - create a sandbox environment backed by the fake provider plugin - run work through that environment - confirm sandbox provider execution does not inherit host secrets implicitly ## Risks - This touches shared contracts, plugin SDK plumbing, server runtime orchestration, and UI environment/workspace flows, so regressions would likely show up as cross-layer mismatches rather than isolated type errors. - Runtime URL discovery and sandbox callback selection are sensitive to host/bind configuration; if that logic is wrong, sandbox-backed callbacks may fail even when execution succeeds. - The fake provider plugin is intentionally deterministic and test-oriented; future providers may expose capability gaps that this branch does not yet cover. ## Model Used - OpenAI Codex coding agent on a GPT-5-class backend in the Paperclip/Codex harness. Exact backend model ID is not exposed in-session. Tool-assisted workflow with shell execution, file editing, git history inspection, and local test execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge	2026-04-24 12:15:53 -07:00
Dotta	8f1cd0474f	[codex] Improve transient recovery and Codex model refresh (#4383) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Adapter execution and retry classification decide whether agent work pauses, retries, or recovers automatically > - Transient provider failures need to be classified precisely so Paperclip does not convert retryable upstream conditions into false hard failures > - At the same time, operators need an up-to-date model list for Codex-backed agents and prompts should nudge agents toward targeted verification instead of repo-wide sweeps > - This pull request tightens transient recovery classification for Claude and Codex, updates the agent prompt guidance, and adds Codex model refresh support end-to-end > - The benefit is better automatic retry behavior plus fresher operator-facing model configuration ## What Changed - added Codex usage-limit retry-window parsing and Claude extra-usage transient classification - normalized the heartbeat transient-recovery contract across adapter executions and heartbeat scheduling - documented that deferred comment wakes only reopen completed issues for human/comment-reopen interactions, while system follow-ups leave closed work closed - updated adapter-utils prompt guidance to prefer targeted verification - added Codex model refresh support in the server route, registry, shared types, and agent config form - added adapter/server tests covering the new parsing, retry scheduling, and model-refresh behavior ## Verification - `pnpm exec vitest run --project @paperclipai/adapter-utils packages/adapter-utils/src/server-utils.test.ts` - `pnpm exec vitest run --project @paperclipai/adapter-claude-local packages/adapters/claude-local/src/server/parse.test.ts` - `pnpm exec vitest run --project @paperclipai/adapter-codex-local packages/adapters/codex-local/src/server/parse.test.ts` - `pnpm exec vitest run --project @paperclipai/server server/src/__tests__/adapter-model-refresh-routes.test.ts server/src/__tests__/adapter-models.test.ts server/src/__tests__/claude-local-execute.test.ts server/src/__tests__/codex-local-execute.test.ts server/src/__tests__/heartbeat-process-recovery.test.ts server/src/__tests__/heartbeat-retry-scheduling.test.ts` ## Risks - Moderate behavior risk: retry classification affects whether runs auto-recover or block, so mistakes here could either suppress needed retries or over-retry real failures - Low workflow risk: deferred comment wake reopening is intentionally scoped to human/comment-reopen interactions so system follow-ups do not revive completed issues unexpectedly > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex GPT-5-based coding agent with tool use and code execution in the Codex CLI environment ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [ ] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-04-24 09:40:40 -05:00
Dotta	7ad225a198	[codex] Improve issue thread review flow (#4381) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Issue detail is where operators coordinate review, approvals, and follow-up work with active runs > - That thread UI needs to surface blockers, descendants, review handoffs, and reply ergonomics clearly enough for humans to guide agent work > - Several small gaps in the issue-thread flow were making review and navigation clunkier than necessary > - This pull request improves the reply composer, descendant/blocker presentation, interaction folding, and review-request handoff plumbing together as one cohesive issue-thread workflow slice > - The benefit is a cleaner operator review loop without changing the broader task model ## What Changed - restored and refined the floating reply composer behavior in the issue thread - folded expired confirmation interactions and improved post-submit thread scrolling behavior - surfaced descendant issue context and inline blocker/paused-assignee notices on the issue detail view - tightened large-board first paint behavior in `IssuesList` - added loose review-request handoffs through the issue execution-policy/update path and covered them with tests ## Verification - `pnpm vitest run ui/src/pages/IssueDetail.test.tsx` - `pnpm vitest run server/src/__tests__/issues-service.test.ts server/src/__tests__/issue-execution-policy.test.ts` - `pnpm exec vitest run --project @paperclipai/ui ui/src/components/IssueChatThread.test.tsx ui/src/components/IssueProperties.test.tsx ui/src/components/IssuesList.test.tsx ui/src/lib/issue-tree.test.ts ui/src/api/issues.test.ts` - `pnpm exec vitest run --project @paperclipai/adapter-utils packages/adapter-utils/src/server-utils.test.ts` - `pnpm exec vitest run --project @paperclipai/server server/src/__tests__/issue-comment-reopen-routes.test.ts -t "coerces executor handoff patches into workflow-controlled review wakes|wakes the return assignee with execution_changes_requested"` - `pnpm exec vitest run --project @paperclipai/server server/src/__tests__/issue-execution-policy.test.ts server/src/__tests__/issues-service.test.ts` ## Visual Evidence - UI layout changes are covered by the focused issue-thread component and issue-detail tests listed above. Browser screenshots were not attachable from this automated greploop environment, so reviewers should use the running preview for final visual confirmation. ## Risks - Moderate UI-flow risk: these changes touch the issue detail experience in multiple spots, so regressions would most likely show up as thread-layout quirks or incorrect review-handoff behavior > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex GPT-5-based coding agent with tool use and code execution in the Codex CLI environment ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots or documented the visual verification path - [ ] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-04-24 08:02:45 -05:00
Devin Foley	e4995bbb1c	Add SSH environment support (#4358) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - The environments subsystem already models execution environments, but before this branch there was no end-to-end SSH-backed runtime path for agents to actually run work against a remote box > - That meant agents could be configured around environment concepts without a reliable way to execute adapter sessions remotely, sync workspace state, and preserve run context across supported adapters > - We also need environment selection to participate in normal Paperclip control-plane behavior: agent defaults, project/issue selection, route validation, and environment probing > - Because this capability is still experimental, the UI surface should be easy to hide and easy to remove later without undoing the underlying implementation > - This pull request adds SSH environment execution support across the runtime, adapters, routes, schema, and tests, then puts the visible environment-management UI behind an experimental flag > - The benefit is that we can validate real SSH-backed agent execution now while keeping the user-facing controls safely gated until the feature is ready to come out of experimentation ## What Changed - Added SSH-backed execution target support in the shared adapter runtime, including remote workspace preparation, skill/runtime asset sync, remote session handling, and workspace restore behavior after runs. - Added SSH execution coverage for supported local adapters, plus remote execution tests across Claude, Codex, Cursor, Gemini, OpenCode, and Pi. - Added environment selection and environment-management backend support needed for SSH execution, including route/service work, validation, probing, and agent default environment persistence. - Added CLI support for SSH environment lab verification and updated related docs/tests. - Added the `enableEnvironments` experimental flag and gated the environment UI behind it on company settings, agent configuration, and project configuration surfaces. ## Verification - `pnpm exec vitest run packages/adapters/claude-local/src/server/execute.remote.test.ts packages/adapters/cursor-local/src/server/execute.remote.test.ts packages/adapters/gemini-local/src/server/execute.remote.test.ts packages/adapters/opencode-local/src/server/execute.remote.test.ts packages/adapters/pi-local/src/server/execute.remote.test.ts` - `pnpm exec vitest run server/src/__tests__/environment-routes.test.ts` - `pnpm exec vitest run server/src/__tests__/instance-settings-routes.test.ts` - `pnpm exec vitest run ui/src/lib/new-agent-hire-payload.test.ts ui/src/lib/new-agent-runtime-config.test.ts` - `pnpm -r typecheck` - `pnpm build` - Manual verification on a branch-local dev server: - enabled the experimental flag - created an SSH environment - created a Linux Claude agent using that environment - confirmed a run executed on the Linux box and synced workspace changes back ## Risks - Medium: this touches runtime execution flow across multiple adapters, so regressions would likely show up in remote session setup, workspace sync, or environment selection precedence. - The UI flag reduces exposure, but the underlying runtime and route changes are still substantial and rely on migration correctness. - The change set is broad across adapters, control-plane services, migrations, and UI gating, so review should pay close attention to environment-selection precedence and remote workspace lifecycle behavior. ## Model Used - OpenAI Codex via Paperclip's local Codex adapter, GPT-5-class coding model with tool use and code execution in the local repo workspace. The local adapter does not surface a more specific public model version string in this branch workflow. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge	2026-04-23 19:15:22 -07:00
Dotta	f98c348e2b	[codex] Add issue subtree pause, cancel, and restore controls (#4332) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies. > - This branch extends the issue control-plane so board operators can pause, cancel, and later restore whole issue subtrees while keeping descendant execution and wake behavior coherent. > - That required new hold state in the database, shared contracts, server routes/services, and issue detail UI controls so subtree actions are durable and auditable instead of ad hoc. > - While this branch was in flight, `master` advanced with new environment lifecycle work, including a new `0065_environments` migration. > - Before opening the PR, this branch had to be rebased onto `paperclipai/paperclip:master` without losing the existing subtree-control work or leaving conflicting migration numbering behind. > - This pull request rebases the subtree pause/cancel/restore feature cleanly onto current `master`, renumbers the hold migration to `0066_issue_tree_holds`, and preserves the full branch diff in a single PR. > - The benefit is that reviewers get one clean, mergeable PR for the subtree-control feature instead of stale branch history with migration conflicts. ## What Changed - Added durable issue subtree hold data structures, shared API/types/validators, server routes/services, and UI flows for subtree pause, cancel, and restore operations. - Added server and UI coverage for subtree previewing, hold creation/release, dependency-aware scheduling under holds, and issue detail subtree controls. - Rebased the branch onto current `paperclipai/paperclip:master` and renumbered the branch migration from `0065_issue_tree_holds` to `0066_issue_tree_holds` so it no longer conflicts with upstream `0065_environments`. - Added a small follow-up commit that makes restore requests return `200 OK` explicitly while keeping pause/cancel hold creation at `201 Created`, and updated the route test to match that contract. ## Verification - `pnpm --filter @paperclipai/db typecheck` - `pnpm --filter @paperclipai/shared typecheck` - `pnpm --filter @paperclipai/server typecheck` - `pnpm --filter @paperclipai/ui typecheck` - `cd server && pnpm exec vitest run src/__tests__/issue-tree-control-routes.test.ts src/__tests__/issue-tree-control-service.test.ts src/__tests__/issue-tree-control-service-unit.test.ts src/__tests__/heartbeat-dependency-scheduling.test.ts` - `cd ui && pnpm exec vitest run src/components/IssueChatThread.test.tsx src/pages/IssueDetail.test.tsx` ## Risks - This is a broad cross-layer change touching DB/schema, shared contracts, server orchestration, and UI; regressions are most likely around subtree status restoration or wake suppression/resume edge cases. - The migration was renumbered during PR prep to avoid the new upstream `0065_environments` conflict. Reviewers should confirm the final `0066_issue_tree_holds` ordering is the only hold-related migration that lands. - The issue-tree restore endpoint now responds with `200` instead of relying on implicit behavior, which is semantically better for a restore operation but still changes an API detail that clients or tests could have assumed. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex coding agent in the Paperclip Codex runtime (GPT-5-class tool-using coding model; exact deployment ID/context window is not exposed inside this session). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [ ] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-04-23 14:51:46 -05:00
Dotta	a957394420	[codex] Add structured issue-thread interactions (#4244) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies. > - Operators supervise that work through issues, comments, approvals, and the board UI. > - Some agent proposals need structured board/user decisions, not hidden markdown conventions or heavyweight governed approvals. > - Issue-thread interactions already provide a natural thread-native surface for proposed tasks and questions. > - This pull request extends that surface with request confirmations, richer interaction cards, and agent/plugin/MCP helpers. > - The benefit is that plan approvals and yes/no decisions become explicit, auditable, and resumable without losing the single-issue workflow. ## What Changed - Added persisted issue-thread interactions for suggested tasks, structured questions, and request confirmations. - Added board UI cards for interaction review, selection, question answers, and accept/reject confirmation flows. - Added MCP and plugin SDK helpers for creating interaction cards from agents/plugins. - Updated agent wake instructions, onboarding assets, Paperclip skill docs, and public docs to prefer structured confirmations for issue-scoped decisions. - Rebased the branch onto `public-gh/master` and renumbered branch migrations to `0063` and `0064`; the idempotency migration uses `ADD COLUMN IF NOT EXISTS` for old branch users. ## Verification - `git diff --check public-gh/master..HEAD` - `pnpm exec vitest run packages/adapter-utils/src/server-utils.test.ts packages/mcp-server/src/tools.test.ts packages/shared/src/issue-thread-interactions.test.ts ui/src/lib/issue-thread-interactions.test.ts ui/src/lib/issue-chat-messages.test.ts ui/src/components/IssueThreadInteractionCard.test.tsx ui/src/components/IssueChatThread.test.tsx server/src/__tests__/issue-thread-interaction-routes.test.ts server/src/__tests__/issue-thread-interactions-service.test.ts server/src/services/issue-thread-interactions.test.ts` -> 9 files / 79 tests passed - `pnpm -r typecheck` -> passed, including `packages/db` migration numbering check ## Risks - Medium: this adds a new issue-thread interaction model across db/shared/server/ui/plugin surfaces. - Migration risk is reduced by placing this branch after current master migrations (`0063`, `0064`) and making the idempotency column add idempotent for users who applied the old branch numbering. - UI interaction behavior is covered by component tests, but this PR does not include browser screenshots. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5-class coding agent runtime. Exact model ID and context window are not exposed in this Paperclip run; tool use and local shell/code execution were enabled. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-04-21 20:15:11 -05:00
Dotta	bcbbb41a4b	[codex] Harden heartbeat runtime cleanup (#4233) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies. > - The heartbeat runtime is the control-plane path that turns issue assignments into agent runs and recovers after process exits. > - Several edge cases could leave high-volume reads unbounded, stale runtime services visible, blocked dependency wakes too eager, or terminal adapter processes still around after output finished. > - These problems make operator views noisy and make long-running agent work less predictable. > - This pull request tightens the runtime/read paths and adds focused regression coverage. > - The benefit is safer heartbeat execution and cleaner runtime state without changing the public task model. ## What Changed - Bounded high-volume issue/log reads in runtime code paths. - Hardened heartbeat handling for blocked dependency wakes and terminal run cleanup. - Added adapter process cleanup coverage for terminal output cases. - Added workspace runtime control tests for stale command matching and stopped services. ## Verification - `pnpm exec vitest run packages/adapter-utils/src/server-utils.test.ts server/src/__tests__/heartbeat-dependency-scheduling.test.ts ui/src/components/WorkspaceRuntimeControls.test.tsx` ## Risks - Medium risk because heartbeat cleanup and runtime filtering affect active agent execution paths. - No migrations. > Checked `ROADMAP.md`; this is runtime hardening and bug-fix work, not a new roadmap-level feature. ## Model Used - OpenAI Codex, GPT-5-based coding agent, tool-enabled repository editing and local test execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-04-21 16:48:47 -05:00
Dotta	09d0678840	[codex] Harden heartbeat scheduling and runtime controls (#4223) ... ## Thinking Path > - Paperclip orchestrates AI agents through issue checkout, heartbeat runs, routines, and auditable control-plane state > - The runtime path has to recover from lost local processes, transient adapter failures, blocked dependencies, and routine coalescing without stranding work > - The existing branch carried several reliability fixes across heartbeat scheduling, issue runtime controls, routine dispatch, and operator-facing run state > - These changes belong together because they share backend contracts, migrations, and runtime status semantics > - This pull request groups the control-plane/runtime slice so it can merge independently from board UI polish and adapter sandbox work > - The benefit is safer heartbeat recovery, clearer runtime controls, and more predictable recurring execution behavior ## What Changed - Adds bounded heartbeat retry scheduling, scheduled retry state, and Codex transient failure recovery handling. - Tightens heartbeat process recovery, blocker wake behavior, issue comment wake handling, routine dispatch coalescing, and activity/dashboard bounds. - Adds runtime-control MCP tools and Paperclip skill docs for issue workspace runtime management. - Adds migrations `0061_lively_thor_girl.sql` and `0062_routine_run_dispatch_fingerprint.sql`. - Surfaces retry state in run ledger/agent UI and keeps related shared types synchronized. ## Verification - `pnpm exec vitest run server/src/__tests__/heartbeat-retry-scheduling.test.ts server/src/__tests__/heartbeat-process-recovery.test.ts server/src/__tests__/routines-service.test.ts` - `pnpm exec vitest run src/tools.test.ts` from `packages/mcp-server` ## Risks - Medium risk: this touches heartbeat recovery and routine dispatch, which are central execution paths. - Migration order matters if split branches land out of order: merge this PR before branches that assume the new runtime/routine fields. - Runtime retry behavior should be watched in CI and in local operator smoke tests because it changes how transient failures are resumed. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5-based coding agent runtime, shell/git tool use enabled. Exact hosted model build and context window are not exposed in this Paperclip heartbeat environment. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge	2026-04-21 12:24:11 -05:00
Dotta	c7c1ca0c78	[codex] Clean up terminal-result adapter process groups (#4129) ... ## Thinking Path > - Paperclip runs local adapter processes for agents and streams their output into heartbeat runs > - Some adapters can emit a terminal result before all descendant processes have exited > - If those descendants keep running, a heartbeat can appear complete while the process group remains alive > - Claude local runs need a bounded cleanup path after terminal JSON output is observed and the child exits > - This pull request adds terminal-result cleanup support to adapter process utilities and wires it into the Claude local adapter > - The benefit is fewer stranded adapter process groups after successful terminal results ## What Changed - Added terminal-result cleanup options to `runChildProcess`. - Tracked child exit plus terminal output before signaling lingering process groups. - Added Claude local adapter configuration for terminal result cleanup grace time. - Added process cleanup tests covering terminal-output cleanup and noisy non-terminal runs. ## Verification - `pnpm install --frozen-lockfile --ignore-scripts` - `pnpm exec vitest run packages/adapter-utils/src/server-utils.test.ts` - Result: 9 tests passed. ## Risks - Medium risk: this changes adapter child-process cleanup behavior. - The cleanup only arms after terminal result detection and child exit, and it is covered by process-group tests. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex coding agent based on GPT-5, tool-enabled local shell and GitHub workflow, exact runtime context window not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots, or documented why it is not applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-04-20 10:38:57 -05:00
Dotta	16b2b84d84	[codex] Improve agent runtime recovery and governance (#4086) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies. > - The heartbeat runtime, agent import path, and agent configuration defaults determine whether work is dispatched safely and predictably. > - Several accumulated fixes all touched agent execution recovery, wake routing, import behavior, and runtime concurrency defaults. > - Those changes need to land together so the heartbeat service and agent creation defaults stay internally consistent. > - This pull request groups the runtime/governance changes from the split branch into one standalone branch. > - The benefit is safer recovery for stranded runs, bounded high-volume reads, imported-agent approval correctness, skill-template support, and a clearer default concurrency policy. ## What Changed - Fixed stranded continuation recovery so successful automatic retries are requeued instead of incorrectly blocking the issue. - Bounded high-volume issue/log reads across issue, heartbeat, agent, project, and workspace paths. - Fixed imported-agent approval and instruction-path permission handling. - Quarantined seeded worktree execution state during worktree provisioning. - Queued approval follow-up wakes and hardened SQL_ASCII heartbeat output handling. - Added reusable agent instruction templates for hiring flows. - Set the default max concurrent agent runs to five and updated related UI/tests/docs. ## Verification - `pnpm install --frozen-lockfile` - `pnpm exec vitest run server/src/__tests__/company-portability.test.ts server/src/__tests__/heartbeat-process-recovery.test.ts server/src/__tests__/heartbeat-comment-wake-batching.test.ts server/src/__tests__/heartbeat-list.test.ts server/src/__tests__/issues-service.test.ts server/src/__tests__/agent-permissions-routes.test.ts packages/adapter-utils/src/server-utils.test.ts ui/src/lib/new-agent-runtime-config.test.ts` - Split integration check: merged this branch first, followed by the other [PAP-1614](/PAP/issues/PAP-1614) branches, with no merge conflicts. - Confirmed this branch does not include `pnpm-lock.yaml`. ## Risks - Medium risk: touches heartbeat recovery, queueing, and issue list bounds in central runtime paths. - Imported-agent and concurrency default behavior changes may affect existing automation that assumes one-at-a-time default runs. - No database migrations are included. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5.4 tool-enabled coding model, agentic code-editing/runtime with local shell and GitHub CLI access; exact context window and reasoning mode are not exposed by the Paperclip harness. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-04-20 06:19:48 -05:00
Dotta	236d11d36f	[codex] Add run liveness continuations (#4083) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies. > - Heartbeat runs are the control-plane record of each agent execution window. > - Long-running local agents can exhaust context or stop while still holding useful next-step state. > - Operators need that stop reason, next action, and continuation path to be durable and visible. > - This pull request adds run liveness metadata, continuation summaries, and UI surfaces for issue run ledgers. > - The benefit is that interrupted or long-running work can resume with clearer context instead of losing the agent's last useful handoff. ## What Changed - Added heartbeat-run liveness fields, continuation attempt tracking, and an idempotent `0058` migration. - Added server services and tests for run liveness, continuation summaries, stop metadata, and activity backfill. - Wired local and HTTP adapters to surface continuation/liveness context through shared adapter utilities. - Added shared constants, validators, and heartbeat types for liveness continuation state. - Added issue-detail UI surfaces for continuation handoffs and the run ledger, with component tests. - Updated agent runtime docs, heartbeat protocol docs, prompt guidance, onboarding assets, and skills instructions to explain continuation behavior. - Addressed Greptile feedback by scoping document evidence by run, excluding system continuation-summary documents from liveness evidence, importing shared liveness types, surfacing hidden ledger run counts, documenting bounded retry behavior, and moving run-ledger liveness backfill off the request path. ## Verification - `pnpm exec vitest run packages/adapter-utils/src/server-utils.test.ts server/src/__tests__/run-continuations.test.ts server/src/__tests__/run-liveness.test.ts server/src/__tests__/activity-service.test.ts server/src/__tests__/documents-service.test.ts server/src/__tests__/issue-continuation-summary.test.ts server/src/services/heartbeat-stop-metadata.test.ts ui/src/components/IssueRunLedger.test.tsx ui/src/components/IssueContinuationHandoff.test.tsx ui/src/components/IssueDocumentsSection.test.tsx` - `pnpm --filter @paperclipai/db build` - `pnpm exec vitest run server/src/__tests__/activity-service.test.ts ui/src/components/IssueRunLedger.test.tsx` - `pnpm --filter @paperclipai/ui typecheck` - `pnpm --filter @paperclipai/server typecheck` - `pnpm exec vitest run server/src/__tests__/activity-service.test.ts server/src/__tests__/run-continuations.test.ts ui/src/components/IssueRunLedger.test.tsx` - `pnpm exec vitest run server/src/__tests__/heartbeat-process-recovery.test.ts -t "treats a plan document update"` - `pnpm exec vitest run server/src/__tests__/activity-service.test.ts server/src/__tests__/heartbeat-process-recovery.test.ts -t "activity service|treats a plan document update"` - Remote PR checks on head `e53b1a1d`: `verify`, `e2e`, `policy`, and Snyk all passed. - Confirmed `public-gh/master` is an ancestor of this branch after fetching `public-gh master`. - Confirmed `pnpm-lock.yaml` is not included in the branch diff. - Confirmed migration `0058_wealthy_starbolt.sql` is ordered after `0057` and uses `IF NOT EXISTS` guards for repeat application. - Greptile inline review threads are resolved. ## Risks - Medium risk: this touches heartbeat execution, liveness recovery, activity rendering, issue routes, shared contracts, docs, and UI. - Migration risk is mitigated by additive columns/indexes and idempotent guards. - Run-ledger liveness backfill is now asynchronous, so the first ledger response can briefly show historical missing liveness until the background backfill completes. - UI screenshot coverage is not included in this packaging pass; validation is currently through focused component tests. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5.4, local tool-use coding agent with terminal, git, GitHub connector, GitHub CLI, and Paperclip API access. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge Screenshot note: no before/after screenshots were captured in this PR packaging pass; the UI changes are covered by focused component tests listed above. --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-04-20 06:01:49 -05:00
Chris Farhood	50cd76d8a3	feat(adapters): add capability flags to ServerAdapterModule (#3540) ... ## Thinking Path > - Paperclip orchestrates AI agents via adapters (`claude_local`, `codex_local`, etc.) > - Each adapter type has different capabilities — instructions bundles, skill materialization, local JWT — but these were gated by 5 hardcoded type lists scattered across server routes and UI components > - External adapter plugins (e.g. a future `opencode_k8s`) cannot add themselves to those hardcoded lists without patching Paperclip source > - The existing `supportsLocalAgentJwt` field on `ServerAdapterModule` proves the right pattern already exists; it just wasn't applied to the other capability gates > - This pull request replaces the 4 remaining hardcoded lists with declarative capability flags on `ServerAdapterModule`, exposed through the adapter listing API > - The benefit is that external adapter plugins can now declare their own capabilities without any changes to Paperclip source code ## What Changed - **`packages/adapter-utils/src/types.ts`** — added optional capability fields to `ServerAdapterModule`: `supportsInstructionsBundle`, `instructionsPathKey`, `requiresMaterializedRuntimeSkills` - **`server/src/routes/agents.ts`** — replaced `DEFAULT_MANAGED_INSTRUCTIONS_ADAPTER_TYPES` and `ADAPTERS_REQUIRING_MATERIALIZED_RUNTIME_SKILLS` hardcoded sets with capability-aware helper functions that fall back to the legacy sets for adapters that don't set flags - **`server/src/routes/adapters.ts`** — `GET /api/adapters` now includes a `capabilities` object per adapter (all four flags + derived `supportsSkills`) - **`server/src/adapters/registry.ts`** — all built-in adapters (`claude_local`, `codex_local`, `process`, `cursor`) now declare flags explicitly - **`ui/src/adapters/use-adapter-capabilities.ts`** — new hook that fetches adapter capabilities from the API - **`ui/src/pages/AgentDetail.tsx`** — replaced hardcoded `isLocal` allowlist with `capabilities.supportsInstructionsBundle` from the API - **`ui/src/components/AgentConfigForm.tsx`** / **`OnboardingWizard.tsx`** — replaced `NONLOCAL_TYPES` denylist with capability-based checks - **`server/src/__tests__/adapter-registry.test.ts`** / **`adapter-routes.test.ts`** — tests covering flag exposure, undefined-when-unset, and per-adapter values - **`docs/adapters/creating-an-adapter.md`** — new "Capability Flags" section documenting all flags and an example for external plugin authors ## Verification - Run `pnpm test --filter=@paperclip/server -- adapter-registry adapter-routes` — all new tests pass - Run `pnpm test --filter=@paperclip/adapter-utils` — existing tests still pass - Spin up dev server, open an agent with `claude_local` type — instructions bundle tab still visible - Create/open an agent with a non-local type — instructions bundle tab still hidden - Call `GET /api/adapters` and verify each adapter includes a `capabilities` object with the correct flags ## Risks - **Low risk overall** — all new flags are optional with backwards-compatible fallbacks to the existing hardcoded sets; no adapter behaviour changes unless a flag is explicitly set - Adapters that do not declare flags continue to use the legacy lists, so there is no regression risk for built-in adapters - The UI capability hook adds one API call to AgentDetail mount; this is a pre-existing endpoint, so no new latency path is introduced ## Model Used - Provider: Anthropic - Model: Claude Sonnet 4.6 (`claude-sonnet-4-6`) - Context: 200k token context window - Mode: Agentic tool use (code editing, bash, grep, file reads) ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Pawla Abdul (Bot) <pawla@groombook.dev> Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-04-15 07:10:52 -05:00
Dotta	c1bb938519	Auto-checkout scoped issue wakes in the harness	2026-04-11 10:53:28 -05:00
Dotta	2d8f97feb0	feat(codex-local): add fast mode support	2026-04-11 08:21:55 -05:00
Dotta	c566a9236c	fix: harden heartbeat and adapter runtime workflows	2026-04-10 22:26:21 -05:00