Feat/temporal (#46)

* refactor: modularize claude-executor and extract shared utilities

- Extract message handling into src/ai/message-handlers.ts with pure functions
- Extract output formatting into src/ai/output-formatters.ts
- Extract progress management into src/ai/progress-manager.ts
- Add audit-logger.ts with Null Object pattern for optional logging
- Add shared utilities: formatting.ts, file-io.ts, functional.ts
- Consolidate getPromptNameForAgent into src/types/agents.ts

* feat: add Claude Code custom commands for debug and review

* feat: add Temporal integration foundation (phase 1-2)

- Add Temporal SDK dependencies (@temporalio/client, worker, workflow, activity)
- Add shared types for pipeline state, metrics, and progress queries
- Add classifyErrorForTemporal() for retry behavior classification
- Add docker-compose for Temporal server with SQLite persistence

* feat: add Temporal activities for agent execution (phase 3)

- Add activities.ts with heartbeat loop, git checkpoint/rollback, and error classification
- Export runClaudePrompt, validateAgentOutput, ClaudePromptResult for Temporal use
- Track attempt number via Temporal Context for accurate audit logging
- Rollback git workspace before retry to ensure clean state

* feat: add Temporal workflow for 5-phase pipeline orchestration (phase 4)

* feat: add Temporal worker, client, and query tools (phase 5)

- Add worker.ts with workflow bundling and graceful shutdown
- Add client.ts CLI to start pipelines with progress polling
- Add query.ts CLI to inspect running workflow state
- Fix buffer overflow by truncating error messages and stack traces
- Skip git operations gracefully on non-git repositories
- Add kill.sh/start.sh dev scripts and Dockerfile.worker

* feat: fix Docker worker container setup

- Install uv instead of deprecated uvx package
- Add mcp-server and configs directories to container
- Mount target repo dynamically via TARGET_REPO env variable

* fix: add report assembly step to Temporal workflow

- Add assembleReportActivity to concatenate exploitation evidence files before report agent runs
- Call assembleFinalReport in workflow Phase 5 before runReportAgent
- Ensure deliverables directory exists before writing final report
- Simplify pipeline-testing report prompt to just prepend header

* refactor: consolidate Docker setup to root docker-compose.yml

* feat: improve Temporal client UX and env handling

- Change default to fire-and-forget (--wait flag to opt-in)
- Add splash screen and improve console output formatting
- Add .env to gitignore, remove from dockerignore for container access
- Add Taskfile for common development commands

* refactor: simplify session ID handling and improve Taskfile options

- Include hostname in workflow ID for better audit log organization
- Extract sanitizeHostname utility to audit/utils.ts for reuse
- Remove unused generateSessionLogPath and buildLogFilePath functions
- Simplify Taskfile with CONFIG/OUTPUT/CLEAN named parameters

* chore: add .env.example and simplify .gitignore

* docs: update README and CLAUDE.md for Temporal workflow usage

- Replace Docker CLI instructions with Task-based commands
- Add monitoring/stopping sections and workflow examples
- Document Temporal orchestration layer and troubleshooting
- Simplify file structure to key files overview

* refactor: replace Taskfile with bash CLI script

- Add shannon bash script with start/logs/query/stop/help commands
- Remove Taskfile.yml dependency (no longer requires Task installation)
- Update README.md and CLAUDE.md to use ./shannon commands
- Update client.ts output to show ./shannon commands

* docs: fix deliverable filename in README

* refactor: remove direct CLI and .shannon-store.json in favor of Temporal

- Delete src/shannon.ts direct CLI entry point (Temporal is now the only mode)
- Remove .shannon-store.json session lock (Temporal handles workflow deduplication)
- Remove broken scripts/export-metrics.js (imported non-existent function)
- Update package.json to remove main, start script, and bin entry
- Clean up CLAUDE.md and debug.md to remove obsolete references

* chore: remove licensing comments from prompt files to prevent leaking into actual prompts

* fix: resolve parallel workflow race conditions and retry logic bugs

- Fix save_deliverable race condition using closure pattern instead of global variable
- Fix error classification order so OutputValidationError matches before generic validation
- Fix ApplicationFailure re-classification bug by checking instanceof before re-throwing
- Add per-error-type retry limits (3 for output validation, 50 for billing)
- Add fast retry intervals for pipeline testing mode (10s vs 5min)
- Increase worker concurrent activities to 25 for parallel workflows

* refactor: pipeline vuln→exploit workflow for parallel execution

- Replace sync barrier between vuln/exploit phases with independent pipelines
- Each vuln type runs: vuln agent → queue check → conditional exploit
- Add checkExploitationQueue activity to skip exploits when no vulns found
- Use Promise.allSettled for graceful failure handling across pipelines
- Add PipelineSummary type for aggregated cost/duration/turns metrics

* fix: re-throw retryable errors in checkExploitationQueue

* fix: detect and retry on Claude Code spending cap errors

- Add spending cap pattern detection in detectApiError() with retryable error
- Add matching patterns to classifyErrorForTemporal() for proper Temporal retry
- Add defense-in-depth safeguard in runClaudePrompt() for $0 cost / low turn detection
- Add final sanity check in activities before declaring success

* fix: increase heartbeat timeout to prevent false worker-dead detection

Original 30s timeout was from POC spec assuming <5min activities. With
hour-long activities and multiple concurrent workflows sharing one worker,
resource contention causes event loop stalls exceeding 30s, triggering
false heartbeat timeouts. Increased to 10min (prod) and 5min (testing).

* fix: temporal db init

* fix: persist home dir

* feat: add per-workflow unified logging with ./shannon logs ID=<workflow-id>

- Add WorkflowLogger class for human-readable, per-workflow log files
- Create workflow.log in audit-logs/{workflowId}/ with phase, agent, tool, and LLM events
- Update ./shannon logs to require ID param and tail specific workflow log
- Add phase transition logging at workflow boundaries
- Include workflow completion summary with agent breakdown (duration, cost)
- Mount audit-logs volume in docker-compose for host access

---------

Co-authored-by: ezl-keygraph <ezhil@keygraph.io>
This commit is contained in:
Arjun Malleswaran
2026-01-15 10:36:11 -08:00
committed by GitHub
parent 45acb16711
commit 51e621d0d5
77 changed files with 6117 additions and 2417 deletions
+382
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// Copyright (C) 2025 Keygraph, Inc.
//
// This program is free software: you can redistribute it and/or modify
// it under the terms of the GNU Affero General Public License version 3
// as published by the Free Software Foundation.
/**
* Workflow Logger
*
* Provides a unified, human-readable log file per workflow.
* Optimized for `tail -f` viewing during concurrent workflow execution.
*/
import fs from 'fs';
import path from 'path';
import { generateWorkflowLogPath, ensureDirectory, type SessionMetadata } from './utils.js';
import { formatDuration, formatTimestamp } from '../utils/formatting.js';
export interface AgentLogDetails {
attemptNumber?: number;
duration_ms?: number;
cost_usd?: number;
success?: boolean;
error?: string;
}
export interface AgentMetricsSummary {
durationMs: number;
costUsd: number | null;
}
export interface WorkflowSummary {
status: 'completed' | 'failed';
totalDurationMs: number;
totalCostUsd: number;
completedAgents: string[];
agentMetrics: Record<string, AgentMetricsSummary>;
error?: string;
}
/**
* WorkflowLogger - Manages the unified workflow log file
*/
export class WorkflowLogger {
private sessionMetadata: SessionMetadata;
private logPath: string;
private stream: fs.WriteStream | null = null;
private initialized: boolean = false;
constructor(sessionMetadata: SessionMetadata) {
this.sessionMetadata = sessionMetadata;
this.logPath = generateWorkflowLogPath(sessionMetadata);
}
/**
* Initialize the log stream (creates file and writes header)
*/
async initialize(): Promise<void> {
if (this.initialized) {
return;
}
// Ensure directory exists
await ensureDirectory(path.dirname(this.logPath));
// Create write stream with append mode
this.stream = fs.createWriteStream(this.logPath, {
flags: 'a',
encoding: 'utf8',
autoClose: true,
});
this.initialized = true;
// Write header only if file is new (empty)
const stats = await fs.promises.stat(this.logPath).catch(() => null);
if (!stats || stats.size === 0) {
await this.writeHeader();
}
}
/**
* Write header to log file
*/
private async writeHeader(): Promise<void> {
const header = [
`================================================================================`,
`Shannon Pentest - Workflow Log`,
`================================================================================`,
`Workflow ID: ${this.sessionMetadata.id}`,
`Target URL: ${this.sessionMetadata.webUrl}`,
`Started: ${formatTimestamp()}`,
`================================================================================`,
``,
].join('\n');
return this.writeRaw(header);
}
/**
* Write raw text to log file with immediate flush
*/
private writeRaw(text: string): Promise<void> {
return new Promise((resolve, reject) => {
if (!this.initialized || !this.stream) {
reject(new Error('WorkflowLogger not initialized'));
return;
}
const needsDrain = !this.stream.write(text, 'utf8', (error) => {
if (error) reject(error);
});
if (needsDrain) {
this.stream.once('drain', resolve);
} else {
resolve();
}
});
}
/**
* Format timestamp for log line (local time, human readable)
*/
private formatLogTime(): string {
const now = new Date();
return now.toISOString().replace('T', ' ').slice(0, 19);
}
/**
* Log a phase transition event
*/
async logPhase(phase: string, event: 'start' | 'complete'): Promise<void> {
await this.ensureInitialized();
const action = event === 'start' ? 'Starting' : 'Completed';
const line = `[${this.formatLogTime()}] [PHASE] ${action}: ${phase}\n`;
// Add blank line before phase start for readability
if (event === 'start') {
await this.writeRaw('\n');
}
await this.writeRaw(line);
}
/**
* Log an agent event
*/
async logAgent(
agentName: string,
event: 'start' | 'end',
details?: AgentLogDetails
): Promise<void> {
await this.ensureInitialized();
let message: string;
if (event === 'start') {
const attempt = details?.attemptNumber ?? 1;
message = `${agentName}: Starting (attempt ${attempt})`;
} else {
const parts: string[] = [agentName + ':'];
if (details?.success === false) {
parts.push('Failed');
if (details?.error) {
parts.push(`- ${details.error}`);
}
} else {
parts.push('Completed');
}
if (details?.duration_ms !== undefined) {
parts.push(`(${formatDuration(details.duration_ms)}`);
if (details?.cost_usd !== undefined) {
parts.push(`$${details.cost_usd.toFixed(2)})`);
} else {
parts.push(')');
}
}
message = parts.join(' ');
}
const line = `[${this.formatLogTime()}] [AGENT] ${message}\n`;
await this.writeRaw(line);
}
/**
* Log a general event
*/
async logEvent(eventType: string, message: string): Promise<void> {
await this.ensureInitialized();
const line = `[${this.formatLogTime()}] [${eventType.toUpperCase()}] ${message}\n`;
await this.writeRaw(line);
}
/**
* Log an error
*/
async logError(error: Error, context?: string): Promise<void> {
await this.ensureInitialized();
const contextStr = context ? ` (${context})` : '';
const line = `[${this.formatLogTime()}] [ERROR] ${error.message}${contextStr}\n`;
await this.writeRaw(line);
}
/**
* Truncate string to max length with ellipsis
*/
private truncate(str: string, maxLen: number): string {
if (str.length <= maxLen) return str;
return str.slice(0, maxLen - 3) + '...';
}
/**
* Format tool parameters for human-readable display
*/
private formatToolParams(toolName: string, params: unknown): string {
if (!params || typeof params !== 'object') {
return '';
}
const p = params as Record<string, unknown>;
// Tool-specific formatting for common tools
switch (toolName) {
case 'Bash':
if (p.command) {
return this.truncate(String(p.command).replace(/\n/g, ' '), 100);
}
break;
case 'Read':
if (p.file_path) {
return String(p.file_path);
}
break;
case 'Write':
if (p.file_path) {
return String(p.file_path);
}
break;
case 'Edit':
if (p.file_path) {
return String(p.file_path);
}
break;
case 'Glob':
if (p.pattern) {
return String(p.pattern);
}
break;
case 'Grep':
if (p.pattern) {
const path = p.path ? ` in ${p.path}` : '';
return `"${this.truncate(String(p.pattern), 50)}"${path}`;
}
break;
case 'WebFetch':
if (p.url) {
return String(p.url);
}
break;
case 'mcp__playwright__browser_navigate':
if (p.url) {
return String(p.url);
}
break;
case 'mcp__playwright__browser_click':
if (p.selector) {
return this.truncate(String(p.selector), 60);
}
break;
case 'mcp__playwright__browser_type':
if (p.selector) {
const text = p.text ? `: "${this.truncate(String(p.text), 30)}"` : '';
return `${this.truncate(String(p.selector), 40)}${text}`;
}
break;
}
// Default: show first string-valued param truncated
for (const [key, val] of Object.entries(p)) {
if (typeof val === 'string' && val.length > 0) {
return `${key}=${this.truncate(val, 60)}`;
}
}
return '';
}
/**
* Log tool start event
*/
async logToolStart(agentName: string, toolName: string, parameters: unknown): Promise<void> {
await this.ensureInitialized();
const params = this.formatToolParams(toolName, parameters);
const paramStr = params ? `: ${params}` : '';
const line = `[${this.formatLogTime()}] [${agentName}] [TOOL] ${toolName}${paramStr}\n`;
await this.writeRaw(line);
}
/**
* Log LLM response
*/
async logLlmResponse(agentName: string, turn: number, content: string): Promise<void> {
await this.ensureInitialized();
// Show full content, replacing newlines with escaped version for single-line output
const escaped = content.replace(/\n/g, '\\n');
const line = `[${this.formatLogTime()}] [${agentName}] [LLM] Turn ${turn}: ${escaped}\n`;
await this.writeRaw(line);
}
/**
* Log workflow completion with full summary
*/
async logWorkflowComplete(summary: WorkflowSummary): Promise<void> {
await this.ensureInitialized();
const status = summary.status === 'completed' ? 'COMPLETED' : 'FAILED';
await this.writeRaw('\n');
await this.writeRaw(`================================================================================\n`);
await this.writeRaw(`Workflow ${status}\n`);
await this.writeRaw(`────────────────────────────────────────\n`);
await this.writeRaw(`Workflow ID: ${this.sessionMetadata.id}\n`);
await this.writeRaw(`Status: ${summary.status}\n`);
await this.writeRaw(`Duration: ${formatDuration(summary.totalDurationMs)}\n`);
await this.writeRaw(`Total Cost: $${summary.totalCostUsd.toFixed(4)}\n`);
await this.writeRaw(`Agents: ${summary.completedAgents.length} completed\n`);
if (summary.error) {
await this.writeRaw(`Error: ${summary.error}\n`);
}
await this.writeRaw(`\n`);
await this.writeRaw(`Agent Breakdown:\n`);
for (const agentName of summary.completedAgents) {
const metrics = summary.agentMetrics[agentName];
if (metrics) {
const duration = formatDuration(metrics.durationMs);
const cost = metrics.costUsd !== null ? `$${metrics.costUsd.toFixed(4)}` : 'N/A';
await this.writeRaw(` - ${agentName} (${duration}, ${cost})\n`);
} else {
await this.writeRaw(` - ${agentName}\n`);
}
}
await this.writeRaw(`================================================================================\n`);
}
/**
* Ensure initialized (helper for lazy initialization)
*/
private async ensureInitialized(): Promise<void> {
if (!this.initialized) {
await this.initialize();
}
}
/**
* Close the log stream
*/
async close(): Promise<void> {
if (!this.initialized || !this.stream) {
return;
}
return new Promise((resolve) => {
this.stream!.end(() => {
this.initialized = false;
resolve();
});
});
}
}