[codex] Add run liveness continuations (#4083)

## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies.
> - Heartbeat runs are the control-plane record of each agent execution
window.
> - Long-running local agents can exhaust context or stop while still
holding useful next-step state.
> - Operators need that stop reason, next action, and continuation path
to be durable and visible.
> - This pull request adds run liveness metadata, continuation
summaries, and UI surfaces for issue run ledgers.
> - The benefit is that interrupted or long-running work can resume with
clearer context instead of losing the agent's last useful handoff.

## What Changed

- Added heartbeat-run liveness fields, continuation attempt tracking,
and an idempotent `0058` migration.
- Added server services and tests for run liveness, continuation
summaries, stop metadata, and activity backfill.
- Wired local and HTTP adapters to surface continuation/liveness context
through shared adapter utilities.
- Added shared constants, validators, and heartbeat types for liveness
continuation state.
- Added issue-detail UI surfaces for continuation handoffs and the run
ledger, with component tests.
- Updated agent runtime docs, heartbeat protocol docs, prompt guidance,
onboarding assets, and skills instructions to explain continuation
behavior.
- Addressed Greptile feedback by scoping document evidence by run,
excluding system continuation-summary documents from liveness evidence,
importing shared liveness types, surfacing hidden ledger run counts,
documenting bounded retry behavior, and moving run-ledger liveness
backfill off the request path.

## Verification

- `pnpm exec vitest run packages/adapter-utils/src/server-utils.test.ts
server/src/__tests__/run-continuations.test.ts
server/src/__tests__/run-liveness.test.ts
server/src/__tests__/activity-service.test.ts
server/src/__tests__/documents-service.test.ts
server/src/__tests__/issue-continuation-summary.test.ts
server/src/services/heartbeat-stop-metadata.test.ts
ui/src/components/IssueRunLedger.test.tsx
ui/src/components/IssueContinuationHandoff.test.tsx
ui/src/components/IssueDocumentsSection.test.tsx`
- `pnpm --filter @paperclipai/db build`
- `pnpm exec vitest run server/src/__tests__/activity-service.test.ts
ui/src/components/IssueRunLedger.test.tsx`
- `pnpm --filter @paperclipai/ui typecheck`
- `pnpm --filter @paperclipai/server typecheck`
- `pnpm exec vitest run server/src/__tests__/activity-service.test.ts
server/src/__tests__/run-continuations.test.ts
ui/src/components/IssueRunLedger.test.tsx`
- `pnpm exec vitest run
server/src/__tests__/heartbeat-process-recovery.test.ts -t "treats a
plan document update"`
- `pnpm exec vitest run server/src/__tests__/activity-service.test.ts
server/src/__tests__/heartbeat-process-recovery.test.ts -t "activity
service|treats a plan document update"`
- Remote PR checks on head `e53b1a1d`: `verify`, `e2e`, `policy`, and
Snyk all passed.
- Confirmed `public-gh/master` is an ancestor of this branch after
fetching `public-gh master`.
- Confirmed `pnpm-lock.yaml` is not included in the branch diff.
- Confirmed migration `0058_wealthy_starbolt.sql` is ordered after
`0057` and uses `IF NOT EXISTS` guards for repeat application.
- Greptile inline review threads are resolved.

## Risks

- Medium risk: this touches heartbeat execution, liveness recovery,
activity rendering, issue routes, shared contracts, docs, and UI.
- Migration risk is mitigated by additive columns/indexes and idempotent
guards.
- Run-ledger liveness backfill is now asynchronous, so the first ledger
response can briefly show historical missing liveness until the
background backfill completes.
- UI screenshot coverage is not included in this packaging pass;
validation is currently through focused component tests.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5.4, local tool-use coding agent with terminal, git,
GitHub connector, GitHub CLI, and Paperclip API access.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

Screenshot note: no before/after screenshots were captured in this PR
packaging pass; the UI changes are covered by focused component tests
listed above.

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
This commit is contained in:
Dotta
2026-04-20 06:01:49 -05:00
committed by GitHub
parent b9a80dcf22
commit 236d11d36f
71 changed files with 18254 additions and 85 deletions
+246 -5
View File
@@ -1,6 +1,20 @@
import { and, desc, eq, isNull, or, sql } from "drizzle-orm";
import type { Db } from "@paperclipai/db";
import { activityLog, agents, heartbeatRuns, issues } from "@paperclipai/db";
import {
activityLog,
agents,
documentRevisions,
heartbeatRunEvents,
heartbeatRuns,
issueComments,
issueDocuments,
issues,
issueWorkProducts,
workspaceOperations,
} from "@paperclipai/db";
import { ISSUE_CONTINUATION_SUMMARY_DOCUMENT_KEY } from "@paperclipai/shared";
import { logger } from "../middleware/logger.js";
import { classifyRunLiveness } from "./run-liveness.js";
export interface ActivityFilters {
companyId: string;
@@ -10,6 +24,7 @@ export interface ActivityFilters {
}
export function activityService(db: Db) {
const scheduledLivenessBackfills = new Set<string>();
const issueIdAsText = sql<string>`${issues.id}::text`;
const summarizedUsageJson = sql<Record<string, unknown> | null>`
case
@@ -74,11 +89,230 @@ export function activityService(db: Db) {
${heartbeatRuns.resultJson} -> 'total_cost_usd',
${heartbeatRuns.resultJson} -> 'cost_usd',
${heartbeatRuns.resultJson} -> 'costUsd'
)
),
'stopReason', ${heartbeatRuns.resultJson} -> 'stopReason',
'effectiveTimeoutSec', ${heartbeatRuns.resultJson} -> 'effectiveTimeoutSec',
'effectiveTimeoutMs', ${heartbeatRuns.resultJson} -> 'effectiveTimeoutMs',
'timeoutConfigured', ${heartbeatRuns.resultJson} -> 'timeoutConfigured',
'timeoutSource', ${heartbeatRuns.resultJson} -> 'timeoutSource',
'timeoutFired', ${heartbeatRuns.resultJson} -> 'timeoutFired'
))
end
`.as("resultJson");
function countValue(value: unknown) {
const parsed = Number(value ?? 0);
return Number.isFinite(parsed) ? Math.max(0, Math.floor(parsed)) : 0;
}
function dateValue(value: unknown) {
if (value instanceof Date) return Number.isNaN(value.getTime()) ? null : value;
if (typeof value === "string" || typeof value === "number") {
const parsed = new Date(value);
return Number.isNaN(parsed.getTime()) ? null : parsed;
}
return null;
}
function latestDate(...values: unknown[]) {
let latest: Date | null = null;
for (const value of values) {
const parsed = dateValue(value);
if (!parsed) continue;
if (!latest || parsed.getTime() > latest.getTime()) latest = parsed;
}
return latest;
}
function asRecord(value: unknown): Record<string, unknown> | null {
if (!value || typeof value !== "object" || Array.isArray(value)) return null;
return value as Record<string, unknown>;
}
function readNumber(value: unknown) {
return typeof value === "number" && Number.isFinite(value) ? value : null;
}
async function backfillMissingRunLivenessForIssue(companyId: string, issueId: string) {
const runs = await db
.select({
id: heartbeatRuns.id,
companyId: heartbeatRuns.companyId,
status: heartbeatRuns.status,
contextSnapshot: heartbeatRuns.contextSnapshot,
resultJson: heartbeatRuns.resultJson,
stdoutExcerpt: heartbeatRuns.stdoutExcerpt,
stderrExcerpt: heartbeatRuns.stderrExcerpt,
error: heartbeatRuns.error,
errorCode: heartbeatRuns.errorCode,
continuationAttempt: heartbeatRuns.continuationAttempt,
})
.from(heartbeatRuns)
.where(
and(
eq(heartbeatRuns.companyId, companyId),
isNull(heartbeatRuns.livenessState),
sql`${heartbeatRuns.status} not in ('queued', 'running')`,
or(
sql`${heartbeatRuns.contextSnapshot} ->> 'issueId' = ${issueId}`,
sql`exists (
select 1
from ${activityLog}
where ${activityLog.companyId} = ${companyId}
and ${activityLog.entityType} = 'issue'
and ${activityLog.entityId} = ${issueId}
and ${activityLog.runId} = ${heartbeatRuns.id}
)`,
),
),
)
.limit(20);
if (runs.length === 0) return;
const issue = await db
.select({
status: issues.status,
title: issues.title,
description: issues.description,
})
.from(issues)
.where(and(eq(issues.companyId, companyId), eq(issues.id, issueId)))
.then((rows) => rows[0] ?? null);
for (const run of runs) {
const context = asRecord(run.contextSnapshot);
const continuationAttempt =
readNumber(context?.continuationAttempt) ??
readNumber(context?.livenessContinuationAttempt) ??
run.continuationAttempt ??
0;
const [commentStats] = await db
.select({
count: sql<number>`count(*)::int`,
latestAt: sql<Date | null>`max(${issueComments.createdAt})`,
})
.from(issueComments)
.where(
and(
eq(issueComments.companyId, companyId),
eq(issueComments.issueId, issueId),
eq(issueComments.createdByRunId, run.id),
),
);
const [documentStats] = await db
.select({
count: sql<number>`count(*)::int`,
planCount: sql<number>`count(*) filter (where ${issueDocuments.key} = 'plan')::int`,
latestAt: sql<Date | null>`max(${documentRevisions.createdAt})`,
})
.from(documentRevisions)
.innerJoin(issueDocuments, eq(documentRevisions.documentId, issueDocuments.documentId))
.where(
and(
eq(documentRevisions.companyId, companyId),
eq(documentRevisions.createdByRunId, run.id),
eq(issueDocuments.companyId, companyId),
eq(issueDocuments.issueId, issueId),
sql`${issueDocuments.key} != ${ISSUE_CONTINUATION_SUMMARY_DOCUMENT_KEY}`,
),
);
const [workProductStats] = await db
.select({
count: sql<number>`count(*)::int`,
latestAt: sql<Date | null>`max(${issueWorkProducts.createdAt})`,
})
.from(issueWorkProducts)
.where(
and(
eq(issueWorkProducts.companyId, companyId),
eq(issueWorkProducts.issueId, issueId),
eq(issueWorkProducts.createdByRunId, run.id),
),
);
const [workspaceOperationStats] = await db
.select({
count: sql<number>`count(*)::int`,
latestAt: sql<Date | null>`max(${workspaceOperations.startedAt})`,
})
.from(workspaceOperations)
.where(and(eq(workspaceOperations.companyId, companyId), eq(workspaceOperations.heartbeatRunId, run.id)));
const [activityStats] = await db
.select({
count: sql<number>`count(*)::int`,
latestAt: sql<Date | null>`max(${activityLog.createdAt})`,
})
.from(activityLog)
.where(and(eq(activityLog.companyId, companyId), eq(activityLog.runId, run.id)));
const [eventStats] = await db
.select({
count: sql<number>`count(*) filter (where ${heartbeatRunEvents.eventType} not in ('lifecycle', 'adapter.invoke', 'error'))::int`,
latestAt: sql<Date | null>`max(${heartbeatRunEvents.createdAt}) filter (where ${heartbeatRunEvents.eventType} not in ('lifecycle', 'adapter.invoke', 'error'))`,
})
.from(heartbeatRunEvents)
.where(and(eq(heartbeatRunEvents.companyId, companyId), eq(heartbeatRunEvents.runId, run.id)));
const classification = classifyRunLiveness({
runStatus: run.status,
issue,
resultJson: asRecord(run.resultJson),
stdoutExcerpt: run.stdoutExcerpt,
stderrExcerpt: run.stderrExcerpt,
error: run.error,
errorCode: run.errorCode,
continuationAttempt,
evidence: {
issueCommentsCreated: countValue(commentStats?.count),
documentRevisionsCreated: countValue(documentStats?.count),
planDocumentRevisionsCreated: countValue(documentStats?.planCount),
workProductsCreated: countValue(workProductStats?.count),
workspaceOperationsCreated: countValue(workspaceOperationStats?.count),
activityEventsCreated: countValue(activityStats?.count),
toolOrActionEventsCreated: countValue(eventStats?.count),
latestEvidenceAt: latestDate(
commentStats?.latestAt,
documentStats?.latestAt,
workProductStats?.latestAt,
workspaceOperationStats?.latestAt,
activityStats?.latestAt,
eventStats?.latestAt,
),
},
});
await db
.update(heartbeatRuns)
.set({
livenessState: classification.livenessState,
livenessReason: classification.livenessReason,
continuationAttempt: classification.continuationAttempt,
lastUsefulActionAt: classification.lastUsefulActionAt,
nextAction: classification.nextAction,
updatedAt: new Date(),
})
.where(and(eq(heartbeatRuns.id, run.id), isNull(heartbeatRuns.livenessState)));
}
}
function scheduleRunLivenessBackfill(companyId: string, issueId: string) {
const key = `${companyId}:${issueId}`;
if (scheduledLivenessBackfills.has(key)) return;
scheduledLivenessBackfills.add(key);
void backfillMissingRunLivenessForIssue(companyId, issueId)
.catch((err: unknown) => {
logger.warn({ err, companyId, issueId }, "run liveness backfill failed");
})
.finally(() => {
scheduledLivenessBackfills.delete(key);
});
}
return {
list: (filters: ActivityFilters) => {
const conditions = [eq(activityLog.companyId, filters.companyId)];
@@ -128,8 +362,9 @@ export function activityService(db: Db) {
)
.orderBy(desc(activityLog.createdAt)),
runsForIssue: (companyId: string, issueId: string) =>
db
runsForIssue: async (companyId: string, issueId: string) => {
scheduleRunLivenessBackfill(companyId, issueId);
return db
.select({
runId: heartbeatRuns.id,
status: heartbeatRuns.status,
@@ -142,6 +377,11 @@ export function activityService(db: Db) {
usageJson: summarizedUsageJson,
resultJson: summarizedResultJson,
logBytes: heartbeatRuns.logBytes,
livenessState: heartbeatRuns.livenessState,
livenessReason: heartbeatRuns.livenessReason,
continuationAttempt: heartbeatRuns.continuationAttempt,
lastUsefulActionAt: heartbeatRuns.lastUsefulActionAt,
nextAction: heartbeatRuns.nextAction,
})
.from(heartbeatRuns)
.innerJoin(
@@ -167,7 +407,8 @@ export function activityService(db: Db) {
),
),
)
.orderBy(desc(heartbeatRuns.createdAt)),
.orderBy(desc(heartbeatRuns.createdAt));
},
issuesForRun: async (runId: string) => {
const run = await db