test: fix post-sync verification regressions

server/src/__tests__/agent-permissions-routes.test.ts

@@ -76,19 +76,27 @@ const mockSecretService = vi.hoisted(() => ({
   resolveAdapterConfigForRuntime: vi.fn(),
 }));
 
+const mockAgentInstructionsService = vi.hoisted(() => ({}));
+const mockCompanySkillService = vi.hoisted(() => ({
+  listRuntimeSkillEntries: vi.fn(),
+  resolveRequestedSkillKeys: vi.fn(),
+}));
 const mockWorkspaceOperationService = vi.hoisted(() => ({}));
 const mockLogActivity = vi.hoisted(() => vi.fn());
 
 vi.mock("../services/index.js", () => ({
   agentService: () => mockAgentService,
+  agentInstructionsService: () => mockAgentInstructionsService,
   accessService: () => mockAccessService,
   approvalService: () => mockApprovalService,
+  companySkillService: () => mockCompanySkillService,
   budgetService: () => mockBudgetService,
   heartbeatService: () => mockHeartbeatService,
   issueApprovalService: () => mockIssueApprovalService,
   issueService: () => mockIssueService,
   logActivity: mockLogActivity,
   secretService: () => mockSecretService,
+  syncInstructionsBundleConfigFromFilePath: vi.fn((_agent, config) => config),
   workspaceOperationService: () => mockWorkspaceOperationService,
 }));
 
@@ -141,6 +149,8 @@ describe("agent permission routes", () => {
     mockAccessService.listPrincipalGrants.mockResolvedValue([]);
     mockAccessService.ensureMembership.mockResolvedValue(undefined);
     mockAccessService.setPrincipalPermission.mockResolvedValue(undefined);
+    mockCompanySkillService.listRuntimeSkillEntries.mockResolvedValue([]);
+    mockCompanySkillService.resolveRequestedSkillKeys.mockImplementation(async (_companyId, requested) => requested);
     mockBudgetService.upsertPolicy.mockResolvedValue(undefined);
     mockSecretService.normalizeAdapterConfigForPersistence.mockImplementation(async (_companyId, config) => config);
     mockSecretService.resolveAdapterConfigForRuntime.mockImplementation(async (_companyId, config) => ({ config }));