* refactor: remove orchestration layer and simplify CLI
Remove the complex orchestration layer including checkpoint management,
rollback/recovery commands, and session management commands. This
consolidates the execution logic directly in shannon.ts for a simpler
fire-and-forget execution model.
Changes:
- Remove checkpoint-manager.ts and rollback functionality
- Remove command-handler.ts and cli/prompts.ts
- Simplify session-manager.ts to just agent definitions
- Consolidate orchestration logic in shannon.ts
- Update CLAUDE.md documentation
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* refactor: move session lock logic to shannon.ts, simplify session-manager
- Reduce session-manager.ts to only AGENTS, AGENT_ORDER, getParallelGroups()
- Move Session interface and lock file functions to shannon.ts
- Simplify Session to only: id, webUrl, repoPath, status, startedAt
- Remove unused types/session.ts
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* refactor: use crypto.randomUUID() for session ID generation
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
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Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>
* feat: add configurable output directory with --output flag
Add --output CLI flag to specify custom output directory for session
folders containing audit logs, prompts, agent logs, and deliverables.
Changes:
- Add --output <path> CLI flag parsing
- Update generateAuditPath() to use custom path when provided
- Add consolidateOutputs() to copy deliverables to session folder
- Update Docker examples with volume mounts for output directories
- Default remains ./audit-logs/ when --output is not specified
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
* feat: add configurable output directory with --output flag
Add --output CLI flag to specify custom output directory for session
folders containing audit logs, prompts, agent logs, and deliverables.
Changes:
- Add --output <path> CLI flag parsing
- Store outputPath in Session interface for persistence
- Update generateAuditPath() to use custom path when provided
- Pass outputPath through pre-recon and checkpoint-manager
- Add consolidateOutputs() to copy deliverables to session folder
- Update Docker examples with volume mount instructions
- Default remains ./audit-logs/ when --output is not specified
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
* chore: add gitkeep and fix formatting
* fix: correct docker run command formatting in README
Remove invalid inline comments after backslash continuations in docker
run commands. Comments cannot appear after backslash line continuations
in shell scripts, as the backslash escapes the newline character.
Reorganized comments to appear on separate lines before or after the
command block for better clarity and proper shell syntax.
Co-Authored-By: Claude Haiku 4.5 <noreply@anthropic.com>
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Co-authored-by: Claude <noreply@anthropic.com>
* chore: initialize TypeScript configuration and build setup
- Add tsconfig.json for root and mcp-server with strict type checking
- Install typescript and @types/node as devDependencies
- Add npm build script for TypeScript compilation
- Update main entrypoint to compiled dist/shannon.js
- Update Dockerfile to build TypeScript before running
- Configure output directory and module resolution for Node.js
* refactor: migrate codebase from JavaScript to TypeScript
- Convert all 37 JavaScript files to TypeScript (.js -> .ts)
- Add type definitions in src/types/ for agents, config, errors, session
- Update mcp-server with proper TypeScript types
- Move entry point from shannon.mjs to src/shannon.ts
- Update tsconfig.json with rootDir: "./src" for cleaner dist output
- Update Dockerfile to build TypeScript before runtime
- Update package.json paths to use compiled dist/shannon.js
No runtime behavior changes - pure type safety migration.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* docs: update CLI references from ./shannon.mjs to shannon
- Update help text in src/cli/ui.ts
- Update usage examples in src/cli/command-handler.ts
- Update setup message in src/shannon.ts
- Update CLAUDE.md documentation with TypeScript file structure
- Replace all ./shannon.mjs references with shannon command
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* chore: remove unnecessary eslint-disable comments
ESLint is not configured in this project, making these comments redundant.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
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Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>
Update GitHub Issues and Discussions links to use correct
organization name (KeygraphHQ instead of keygraph).
🤖 Generated with [Claude Code](https://claude.com/claude-code)
- Remove .env file with incorrect CLAUDE_CODE_MAX_TOKENS variable
- Remove .env copy from Dockerfile that was causing build to fail
- Update README to distinguish local (export) vs Docker (-e) env var usage
- Add CLAUDE_CODE_MAX_OUTPUT_TOKENS to all Docker run examples
The correct variable is CLAUDE_CODE_MAX_OUTPUT_TOKENS (not CLAUDE_CODE_MAX_TOKENS)
and should be passed at runtime via -e flag for Docker or export for local runs.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Consolidates SQL Injection and Command Injection references to the unified "Injection" terminology for consistency with agent naming and OWASP categorization.
Changes:
- Updated feature descriptions and vulnerability lists
- Modified architecture diagrams
- Simplified targeted vulnerability scope
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Updates .gitignore to only ignore top-level audit-logs/ directory, allowing xben-benchmark-results audit logs to be tracked. This enables full reproducibility of benchmark runs with complete session data, prompts, and agent execution logs.
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Co-Authored-By: Claude <noreply@anthropic.com>
ezl-keygraph