Commit Graph

920 Commits

Author SHA1 Message Date
Dotta ece8a51e22 [codex] Bundle local branch fixes from PAP-10032 (#6604)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies.
> - This branch accumulated multiple already-tested control-plane,
adapter runtime, invite, workspace, plugin, and UI quality fixes on the
primary Paperclip checkout.
> - `origin/master` advanced while those commits were still local, so
the branch needed to be preserved and reconciled before review.
> - Splitting the branch commit-by-commit against the new base produced
overlapping conflicts with recently merged upstream PRs.
> - This pull request keeps the remaining branch as one standalone PR
because the final diff is 38 files after removing screenshot artifacts,
under Greptile's 100-file cap, and can be merged independently after
review.
> - The benefit is that none of the local work is lost, the branch is
now based on current `origin/master`, and reviewers can evaluate the
reconciled changes in one place.

## What Changed

- Merged the local accumulated branch with current `origin/master` and
resolved the invite-flow overlaps from the newer upstream companies
query helper.
- Preserved the local fixes for invite existing-member behavior, invite
link copy fallback, reusable workspace selection, worktree auth, static
SPA fallback, markdown wrapping, plugin slot registration, cloud
upstream UX/server polish, project sorting, and related tests.
- Removed screenshot artifacts from the PR per review request.
- Kept the PR under the requested file limit: 38 files changed, with no
`pnpm-lock.yaml` or `.github/workflows/*` changes.

## Verification

- `NODE_ENV=test pnpm exec vitest run
ui/src/pages/CompanyInvites.test.tsx ui/src/pages/InviteLanding.test.tsx
ui/src/pages/Projects.test.tsx ui/src/plugins/slots.test.ts
ui/src/components/MarkdownBody.test.tsx
server/src/__tests__/invite-accept-existing-member.test.ts
server/src/__tests__/static-index-html.test.ts
server/src/__tests__/execution-workspaces-service.test.ts
server/src/__tests__/better-auth.test.ts
server/src/__tests__/worktree-config.test.ts`
- `NODE_ENV=test pnpm --filter @paperclipai/ui typecheck`
- `NODE_ENV=test pnpm --filter @paperclipai/server typecheck`
- Confirmed `git diff --name-only origin/master...HEAD | wc -l` is `38`.
- Confirmed no PR diff entries match `pnpm-lock.yaml`,
`.github/workflows/*`, or `screenshots/*`.

## Risks

- Medium review risk because this is a bundled rescue PR rather than
several narrow feature PRs.
- Invite flow and company cache behavior overlapped with newer upstream
changes; the merge resolution intentionally keeps the shared
`companiesListQueryOptions` helper while preserving local
existing-member invite behavior.
- Visual review evidence is no longer attached in-repo because
screenshots were removed from this PR per review request.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5-based coding agent, with repository tool access,
terminal execution, and git/GitHub CLI operations.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] UI screenshots were intentionally removed from this PR per review
request
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Opus 4.7 <noreply@anthropic.com>
Co-authored-by: CodexCoder <codexcoder@paperclip.local>
2026-05-25 07:25:26 -05:00
Devin Foley 96f0279e08 Make ACPX-Claude adapter work seamlessly (PAPA-388) (#6590)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies, so when
an adapter fails, the platform must surface enough detail for the next
agent (or human reviewer) to act
> - The `acpx_local` adapter wraps `claude-agent-acp`, which in turn
drives the Claude Code SDK — three layers, three different permission
and error-handling models
> - A user created a `Claude Local ACPX` agent in PAPA-387 and it failed
instantly with the generic `acpx.error / "Internal error"` log,
stranding the work and triggering an opaque `stranded_assigned_issue`
recovery to the CTO
> - Once the diagnostic blackbox was opened, the underlying cause turned
out to be two SDK-level mismatches: a model-name allowlist that rejects
bare IDs like `claude-opus-4-7`, and a Claude Code
permission/Read-sandbox configuration that silently denies every
non-allowlisted tool when the user's `~/.claude/settings.json` has
`defaultMode: "dontAsk"`
> - This pull request fixes both classes of failure in the adapter
itself so new ACPX agents work seamlessly without per-host
configuration, and widens the diagnostic surface so the *next* failure
of any kind is actionable
> - The benefit is that ACPX-Claude can join the regular agent roster —
verified end to end on PAPA-401, where the agent successfully reached
the Paperclip API, opened a worktree, surveyed existing notification
PRs, and posted a structured plan

## What Changed

- Widen ACPX failure diagnostics
(`packages/adapters/acpx-local/src/server/execute.ts`):
- Capture `err.name`, ACP code, `cause.message`, retryable flag, and a
5-frame stack preview into `errorMeta`.
- Promote phase-specific error codes: `ensure_session →
acpx_session_init_failed`, `configure_session →
acpx_session_config_failed`, `turn → acpx_turn_failed`, plus mapping for
`ACP_BACKEND_MISSING` / `ACP_BACKEND_UNAVAILABLE`.
- Set `verbose: true` on the ACPX runtime so its session-event log flows
through `ctx.onLog`.
- Capture child-process stderr via a wrapper-script tee into
`<stateDir>/run-stderr/<runId>.log`, inline the tail into the
`acpx.error` payload as `childStderrTail`, and forward it through
`ctx.onLog("stderr", …)` so it lands in the heartbeat `stderrExcerpt`
column (existing redaction applies).
- Set the model via `ANTHROPIC_MODEL` env for the `claude` agent instead
of `set_config_option(model, …)`. The ACP server's `set_config_option`
handler validates against an internal allowlist and rejects bare IDs
like `claude-opus-4-7`. `ANTHROPIC_MODEL` is read during initialization
and bypasses that check.
- Seed `<worktree>/.claude/settings.local.json` before spawning
`claude-agent-acp` (the seamless-API fix). Since `claude-agent-acp`
hard-codes `settingSources: ["user", "project", "local"]` and "local"
has the highest precedence:
- Set `permissions.defaultMode: "default"`, but **only** if the user's
value is missing or `"dontAsk"` (the broken case). Other modes like
`acceptEdits`/`plan` are preserved.
- Pre-allow Paperclip's Bash surface (`Bash(curl:*)`, `Bash(env:*)`,
`Bash(<cwd>/scripts/paperclip-issue-update.sh:*)`,
`Bash(<cwd>/scripts/paperclip:*)`).
- Widen `permissions.additionalDirectories` to include `stateDir`,
`agentHome`, and the per-company instance root
(`~/.paperclip/instances/<id>/companies/<companyId>`). Scoped to this
company only — does not expose other tenants.
- Existing user entries are merged, not replaced. The resolved roots are
folded into the session fingerprint so warm-session handles invalidate
when they change.
- Sync the existing server-side integration test
(`server/src/__tests__/acpx-local-execute.test.ts`) to assert
`acpx_session_init_failed` instead of the now-removed
`acpx_protocol_error` for `ACP_SESSION_INIT_FAILED` (a follow-up to
commit 1).

## Verification

- `pnpm --filter "@paperclipai/adapter-acpx-local" run typecheck` —
passes.
- `pnpm vitest run` in `packages/adapters/acpx-local` — 35/35 pass,
includes 4 new tests covering the settings.local.json write path (claude
only, merge with pre-existing content, `dontAsk` override, codex no-op).
- `pnpm vitest run src/__tests__/acpx-local-execute.test.ts` in
`server/` — 15/15 pass after the test-sync commit.
- End-to-end manual verification (PAPA-401): the `Claude Local ACPX`
agent that previously hit "restricted environment" now successfully
reaches the Paperclip API, opens its worktree, posts structured plan
comments, and flips the issue to `in_review` without any external
configuration.

## Risks

- **Low**, scoped to the `acpx_local` adapter. The settings.local.json
write is per-worktree (worktrees live under
`.paperclip/worktrees/<issue>/`) and only triggers when `acpxAgent ===
"claude"`. Existing user content is merged with `[...existing,
...paperclip]` and deduped — nothing is overwritten outright.
- The `defaultMode` override is intentionally narrow: it only flips
`"dontAsk"` (which silently denies every tool and is the root cause) to
`"default"`. Users who explicitly picked `acceptEdits`, `plan`, or any
other mode keep their choice.
- Stderr capture goes through the existing `log-redaction` pass before
persisting, so `PAPERCLIP_API_KEY` and similar secrets in the wrapper
env don't leak into heartbeat logs.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 4.7 (`claude-opus-4-7`), running in the `claude_local`
adapter via Paperclip's harness. Extended thinking enabled, tool use
enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] If this change affects the UI, I have included before/after
screenshots — N/A (adapter-only)
- [ ] I have updated relevant documentation to reflect my changes — no
user-facing docs changed; internal commentary in the code change
explains the SDK constraints
- [x] I have considered and documented any risks above
- [ ] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-23 13:01:27 -07:00
Aron Prins 897cc322c7 Improve external agent invite flow (#6183)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies.
> - Agent creation can happen through local runtimes, managed runtimes,
and external agents that onboard through invites.
> - The old OpenClaw-oriented invite UX lived under company
settings/invites and made a gateway-specific path look like a company
access setting.
> - That hid the broader bring-your-own-agent flow and forced operators
to leave the add-agent modal when adding an external agent.
> - This pull request moves external agent invite generation into the
add-agent modal and makes the copy agent-oriented instead of
OpenClaw-only.
> - The benefit is a clearer agent-first onboarding path while company
invites stay focused on human access.

## What Changed

- Added an external-agent invite branch to the add-agent modal,
including a dedicated prompt result view with Back navigation.
- Added a shared agent onboarding prompt builder and focused modal
coverage for prompt replacement/back navigation.
- Removed the agent invite prompt UI from Company Settings and Company
Invites, leaving Company Invites focused on human access links and
invite history.
- Updated the hidden OpenClaw Gateway runtime hint to direct operators
to the add-agent invite flow instead of presenting it as a blocked
runtime card.
- Updated invite/onboarding docs, storybook coverage, and server-side
onboarding copy toward generic agent language while preserving existing
gateway compatibility.

## Verification

- `pnpm -r typecheck`
- `pnpm build`
- `FAKE_BIN="$(mktemp -d)/bin"; mkdir -p "$FAKE_BIN"; printf
'#!/bin/sh\nexit 1\n' > "$FAKE_BIN/tailscale"; chmod +x
"$FAKE_BIN/tailscale"; PATH="$FAKE_BIN:$PATH" pnpm test:run`
- `pnpm test:run` without the fake `tailscale` shim was also attempted;
it failed only in two pre-existing CLI tailnet fallback tests because
this host has a real Tailscale address (`100.125.202.3`) where those
tests expect no Tailscale.
- Focused confirmation for that host-env issue: `FAKE_BIN=...
PATH="$FAKE_BIN:$PATH" pnpm exec vitest run --project paperclipai
cli/src/__tests__/network-bind.test.ts
cli/src/__tests__/onboard.test.ts`
- Manual UI verification: served UI locally in light mode, opened
add-agent modal, generated external agent prompt, verified the generated
prompt replaces the form and Back returns to the form.

### Screenshots

![Add agent
modal](https://raw.githubusercontent.com/aronprins/paperclip/pr-assets/6183-agent-invites/.github/pr-screenshots/6183/add-agent-modal-light.png)

![External agent invite
form](https://raw.githubusercontent.com/aronprins/paperclip/pr-assets/6183-agent-invites/.github/pr-screenshots/6183/external-agent-invite-form-light.png)

![Generated onboarding prompt replacement
view](https://raw.githubusercontent.com/aronprins/paperclip/pr-assets/6183-agent-invites/.github/pr-screenshots/6183/onboarding-prompt-result-light.png)

## Risks

- Existing OpenClaw gateway compatibility remains, but operators now
discover external agent onboarding from the add-agent modal instead of
company settings.
- Agent invites still appear in the invite history table, so that page
may show agent-scoped invite rows even though it no longer creates agent
onboarding prompts.
- Low migration risk: no schema changes.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5 coding agent in Codex desktop; tool-enabled
repository, shell, browser, and GitHub workflow. Context window size was
not exposed by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-05-23 09:09:40 -05:00
Aron Prins 4811d8dd33 Fix wrapped company issue prefix conflicts (#6423)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies.
> - Company creation is the first control-plane object operators create,
and the generated issue prefix becomes part of task identity.
> - The company service already retries when a generated issue prefix
collides with the `companies_issue_prefix_idx` unique constraint.
> - Drizzle 0.45.x wraps PostgreSQL errors in `DrizzleQueryError`,
leaving the real `23505` constraint error on the `.cause` chain.
> - The existing retry detector only inspected the top-level error, so
wrapped prefix collisions surfaced as 500s instead of retrying.
> - This pull request walks the error cause chain for the exact prefix
constraint and verifies the retry path against embedded Postgres.
> - The benefit is company creation no longer fails when generated
prefixes collide under Drizzle 0.45.x wrappers.

## What Changed

- Walk the error `.cause` chain when detecting
`companies_issue_prefix_idx` unique violations, with a cycle guard and
support for `constraint` / `constraint_name` fields.
- Added an embedded Postgres regression test that seeds `ARO`, creates
`Aron & Sharon`, and verifies the retry produces `AROA`.
- Stabilized existing async tests touched by full verification: instance
sidebar plugin rendering now waits for React Query results, and
Tailscale-unavailable CLI tests explicitly hide host `tailscale`
detection.

## Verification

- `pnpm --filter @paperclipai/server exec vitest run
src/__tests__/companies-service.test.ts`
- `pnpm --filter @paperclipai/server exec vitest run
src/__tests__/heartbeat-stale-queue-invalidation.test.ts`
- `pnpm --filter @paperclipai/ui exec vitest run
src/components/InstanceSidebar.test.tsx`
- `pnpm --filter paperclipai exec vitest run
src/__tests__/network-bind.test.ts src/__tests__/onboard.test.ts`
- `pnpm test:run`
- `pnpm -r typecheck`
- `pnpm build`

## Risks

- Low runtime risk: the retry behavior only expands detection for the
existing exact company issue-prefix unique constraint.
- The cause-chain walk is bounded by visited objects to avoid cycles.
- The sidebar and CLI changes are test-only stabilization and do not
change production behavior.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5 coding agent in Codex desktop, with local
shell/tool execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots (N/A: no UI behavior change)
- [x] I have updated relevant documentation to reflect my changes (N/A:
bug fix with no user-facing docs change)
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

Closes #6350
2026-05-22 15:27:54 -05:00
Dotta ad6effa65c [codex] Improve runtime and import reliability (#6549)
## Thinking Path

> - Paperclip coordinates autonomous company work through local and
hosted runtime surfaces.
> - Local embedded Postgres and tenant import/export paths are
foundational reliability pieces.
> - A runtime failure in either path can stop agents or imports before
useful work begins.
> - The branch included remaining fixes for embedded native library
bootstrap and async tenant import handling.
> - This pull request groups those runtime/import reliability changes
into one standalone PR.
> - The benefit is a more robust local runtime and safer cloud tenant
import behavior.

## What Changed

- Prepared embedded Postgres native runtime before startup in
CLI/server/test entrypoints.
- Added embedded Postgres native bootstrap coverage.
- Added async tenant import job handling and deferred validation
coverage.
- Kept the runtime/import changes based directly on current
`origin/master` after related upstream PRs had already merged.

## Verification

- `pnpm --filter @paperclipai/plugin-sdk build`
- `NODE_ENV=test pnpm exec vitest run
packages/db/src/embedded-postgres-native.test.ts
server/src/__tests__/company-portability-routes.test.ts`

## Risks

- Medium-low: this touches startup/import paths, but the branch is small
and covered by targeted tests.
- The embedded Postgres change depends on platform-specific
native-library behavior, so CI and follow-up checks should still verify
supported runners.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI GPT-5 Codex via `codex_local`, tool-enabled coding session;
exact context window not exposed by this runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-05-22 09:57:22 -05:00
Dotta e43b392a79 [codex] Add local Cloud Upstream sync (#6548)
## Thinking Path

> - Paperclip is the control plane for AI-agent companies.
> - Operators need a path to move local company state toward Paperclip
Cloud without losing local-first control.
> - The Cloud Upstream flow needs API, persistence, CLI, and board UI
surfaces that agree on the same manifest/run model.
> - The existing branch had the feature work plus UX and error-handling
follow-ups.
> - This pull request packages the remaining Cloud Upstream sync work
into one standalone branch.
> - The benefit is an inspectable local-to-cloud sync workflow with
preview, conflicts, activation, and captured UX review states.

## What Changed

- Added Cloud Upstream shared types, server routes/services, and
persisted run schema/migration.
- Added Paperclip Cloud CLI sync helpers and local connection storage.
- Added the Cloud Upstream board UI, settings entry points, query keys,
and UX lab page.
- Added preview/activation checklist behavior, redirect handling,
manifest-only preview support, friendly errors, in-flight hints, and
entity count summaries.

## Verification

- `pnpm --filter @paperclipai/plugin-sdk build`
- `NODE_ENV=test pnpm exec vitest run cli/src/__tests__/cloud.test.ts
server/src/__tests__/instance-settings-routes.test.ts
server/src/__tests__/instance-settings-service.test.ts
ui/src/pages/CloudUpstream.test.tsx
ui/src/components/CompanySettingsSidebar.test.tsx`
- `NODE_ENV=test pnpm exec vitest run
server/src/__tests__/cloud-upstreams.test.ts`

Worktree setup note: the isolated worktree install skipped native sqlite
build scripts, so I copied the already-built local sqlite binding from
the main checkout before running
`server/src/__tests__/cloud-upstreams.test.ts`. The test then passed.

## Risks

- Medium: this adds a database migration and a broad feature path across
CLI/server/UI.
- Merge order: this is the only PR in this split with a DB migration;
merge it before any future Cloud Upstream migration follow-up.
- Mitigation: the PR is based directly on current `origin/master`, has
targeted route/service/UI tests, and keeps the feature behind existing
experimental Cloud Sync settings.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI GPT-5 Codex via `codex_local`, tool-enabled coding session;
exact context window not exposed by this runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, screenshot artifacts are
intentionally omitted per reviewer request
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-05-22 09:56:22 -05:00
Dotta a1835cfa5e [codex] Harden plugin runtime invocation scope (#6547)
## Thinking Path

> - Paperclip orchestrates AI-agent companies through a company-scoped
control plane.
> - Plugins extend that control plane, but plugin workers still call
back into host APIs.
> - Those worker-to-host calls need the same company boundary guarantees
as normal API routes.
> - Plugin action handlers also need authenticated actor context from
the host instead of trusting caller-supplied params.
> - This pull request hardens plugin bridge/action scope and keeps
plugin operation issues out of normal issue surfaces.
> - The benefit is safer plugin execution with clearer authorization
boundaries and better test coverage.

## What Changed

- Added host-owned invocation context plumbing for nested plugin worker
calls.
- Added actor context to plugin `performAction` calls and test harness
helpers.
- Enforced company invocation scope on worker-to-host calls and filtered
company lists to the active invocation scope.
- Extended plugin action route tests for board and agent actor context,
spoofed company params, and cross-company rejection.
- Extended plugin worker manager coverage for invocation-scope
propagation.
- Filtered typed and legacy plugin operation issue origins from default
issue/inbox lists.

## Verification

- `pnpm --filter @paperclipai/plugin-sdk build`
- `NODE_ENV=test pnpm exec vitest run
packages/plugins/sdk/tests/host-client-factory.test.ts
packages/plugins/sdk/tests/testing-actions.test.ts
server/src/__tests__/plugin-routes-authz.test.ts
server/src/__tests__/plugin-worker-manager.test.ts
server/src/__tests__/issues-service.test.ts`

Note: embedded Postgres issue-service tests reported host-level Postgres
init skip for 47 tests; the non-embedded targeted tests passed.

## Risks

- Medium: plugin host authorization paths are sensitive, and external
plugins may rely on previously loose company params.
- Mitigation: the change only tightens calls when the host attached a
company invocation scope and includes explicit tests for board, agent,
and nested worker calls.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI GPT-5 Codex via `codex_local`, tool-enabled coding session;
exact context window not exposed by this runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-05-22 09:16:24 -05:00
Dotta 38c185fb8b [codex] Add agent permissions and controls plan (#6386)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies by keeping
task ownership, approvals, and operator control inside one control
plane.
> - Agent permissions and plugin-hosted company settings sit on the
boundary between autonomy and governance.
> - V1 needs scoped task assignment rules, plugin extension points, and
clearer company access surfaces without weakening company boundaries.
> - The branch builds the core authorization service, plugin SDK/host
APIs, and UI simplifications needed to support those controls.
> - Paperclip EE plugin surfaces were intentionally moved out of this
core PR per review direction, so this PR now carries only the public
core/plugin infrastructure work.
> - The latest updates preserve the PAP-9937 branch changes that belong
in this PR, remove the `design/` artifacts, and exclude the experimental
`plugin-briefs` package.
> - Greptile feedback was applied through the authorization/audit paths
and the final cleanup commit was re-reviewed at 5/5 with no unresolved
Greptile threads.
> - The benefit is safer assignment control with extension hooks for
richer permission products while preserving simple defaults for normal
operators.

## What Changed

- Added scoped task-assignment authorization decisions and routed
issue/agent assignment mutations through the authorization service.
- Added plugin SDK and host APIs for company settings slots,
authorization policy/grant management, assignment previews, and bridge
invocation scope propagation.
- Simplified core company access UI and moved advanced controls behind
plugin-provided settings surfaces.
- Added retry-now affordances for blocked issue next-step notices.
- Added protected-assignment enforcement for persisted
agent/project/issue policies, including explicit-grant fallback
behavior.
- Added incremental principal-access compatibility backfill for active
agent memberships and role-default human permission grants.
- Added the Markdown code block wrap action fix from the latest branch
changes.
- Removed `design/` artifacts from the PR and removed
`packages/plugins/plugin-briefs` from the final diff.
- Addressed Greptile feedback for plugin actor sanitization, legacy
membership handling, audit pagination, unknown grant-scope metadata, and
startup test mocks.

## Verification

- `pnpm exec vitest run server/src/__tests__/access-service.test.ts
server/src/__tests__/company-portability.test.ts` -> 2 files passed, 54
tests passed.
- `pnpm exec vitest run
server/src/__tests__/server-startup-feedback-export.test.ts
server/src/__tests__/access-service.test.ts
server/src/__tests__/company-portability.test.ts` -> 3 files passed, 62
tests passed.
- `pnpm exec vitest run
server/src/__tests__/authorization-service.test.ts
server/src/__tests__/plugin-access-authorization-host-services.test.ts
server/src/__tests__/server-startup-feedback-export.test.ts` -> 3 files
passed, 28 tests passed.
- `pnpm --filter @paperclipai/server typecheck` -> passed.
- `git diff --check` -> passed.
- `node ./scripts/check-docker-deps-stage.mjs` -> passed.
- `CI=true pnpm install --frozen-lockfile --ignore-scripts` -> passed
with no lockfile update.
- `pnpm exec vitest run
ui/src/components/MarkdownBody.interaction.test.tsx` -> 1 test passed.
- `git ls-files design packages/plugins/plugin-briefs | wc -l` -> 0.
- GitHub CI on `40cd83b53` -> all checks passed, merge state `CLEAN`.
- Greptile on `40cd83b53` -> 5/5, 102 files reviewed, 0
comments/annotations added, 0 unresolved review threads.
- Confirmed the PR diff contains no `design/`,
`packages/plugins/plugin-briefs`, `pnpm-lock.yaml`, or
`.github/workflows` changes.

## Risks

- Medium: task assignment authorization paths are behaviorally stricter
for protected/private policy data, so existing plugin-authored policies
may block assignment until explicit grants or approval flows are
configured.
- Medium: plugin-host authorization APIs expand the surface area
available to trusted plugins and need careful review for company
scoping.
- Low: startup now performs a principal-access compatibility backfill,
but the migration and runtime backfill use conflict-tolerant inserts.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5 coding agent, tool-enabled workflow with shell,
git, and GitHub CLI access.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-22 08:12:52 -05:00
Dotta c91a062326 [codex] Runtime control-plane fixes (#6380)
## Thinking Path

> - Paperclip orchestrates AI agents through a server-side control plane
> - That control plane depends on reliable issue state transitions,
plugin lifecycle behavior, import limits, and startup/shutdown handling
> - Several small runtime fixes had accumulated on the working branch
and were mixed with larger feature work
> - Keeping them separate makes the correctness fixes reviewable and
mergeable without waiting for cloud-sync UI work
> - This pull request groups the server/runtime control-plane fixes into
one standalone branch
> - The benefit is a tighter, safer runtime baseline for retries,
imports, plugin migrations, feedback flushing, and trusted cloud import
handling

## What Changed

- Fixed updated issue list pagination sorting and scheduled retry
comment handling.
- Re-applied pending plugin migrations during hot reload and fixed
plugin-schema worktree seed restore.
- Hardened public tenant DB startup, portable import body limits,
trusted cloud import errors, and trusted cloud tenant import mutation
access.
- Expired stale request confirmations after user comments.
- Added feedback export shutdown hardening so database-unavailable flush
loops stop cleanly.
- Guarded plugin worker `error` event emission when no listener is
registered.

## Verification

- `pnpm install --frozen-lockfile --ignore-scripts`
- `pnpm --filter @paperclipai/plugin-sdk build`
- `npm run install --prefix
node_modules/.pnpm/sqlite3@5.1.7/node_modules/sqlite3`
- `pnpm exec vitest run server/src/__tests__/issues-service.test.ts
server/src/__tests__/plugin-lifecycle-restart.test.ts
server/src/__tests__/server-startup-feedback-export.test.ts
server/src/__tests__/issue-comment-reopen-routes.test.ts
server/src/__tests__/issue-thread-interactions-service.test.ts
server/src/__tests__/issue-thread-interaction-routes.test.ts
server/src/__tests__/body-limits.test.ts
server/src/__tests__/feedback-flush-controller.test.ts
server/src/__tests__/error-handler.test.ts
server/src/__tests__/board-mutation-guard.test.ts
packages/db/src/backup-lib.test.ts` initially exposed local setup issues
and two 5s test timeouts.
- Rerun after local prereq build: `pnpm exec vitest run --testTimeout
15000 server/src/__tests__/issue-comment-reopen-routes.test.ts
server/src/__tests__/issue-thread-interaction-routes.test.ts
server/src/__tests__/feedback-flush-controller.test.ts
server/src/__tests__/server-startup-feedback-export.test.ts` passed.
- Some embedded Postgres-backed tests skipped on this host because local
Postgres init was unavailable.

## Risks

- Runtime-touching branch: startup/shutdown and issue interaction
behavior should be reviewed carefully.
- The feedback export change disables repeated flush attempts only for
database connection-refused failures; other upload failures still log
normally.
- The plugin worker error guard avoids process crashes from unhandled
EventEmitter errors but may hide errors from code paths that expected an
emitted listener.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5-based coding agent with local shell/git/tool use.
Exact hosted model ID and context-window size are not exposed by the
local Paperclip adapter runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-20 10:37:11 -05:00
Dotta f257530537 [codex] UI and dev ops quality-of-life (#6384)
## Thinking Path

> - Paperclip operators spend most of their time scanning the board,
inbox, sidebar, and local dev status surfaces
> - Small UI and dev-ops frictions make repeated operator workflows feel
slower than they need to be
> - The working branch contained several independent quality-of-life
improvements mixed with larger cloud work
> - Grouping these smaller UI/dev-ops changes together keeps review
overhead reasonable without merging them into feature PRs
> - This pull request collects the operator-facing QoL polish into one
standalone branch
> - The benefit is a cleaner board navigation and local dev recovery
experience without depending on cloud upstream sync

## What Changed

- Relaxed forced 44px touch targets for small inline widgets.
- Fixed mobile mention menu scrolling and sidebar spacing on
touch/mobile layouts.
- Synced inbox hover state with j/k selection.
- Moved plugin sidebar entries into the Work section.
- Added manual dev-server restart action/banner behavior.
- Logged plugin bridge 502 causes for better diagnosis.

## Verification

- `pnpm install --frozen-lockfile --ignore-scripts`
- `pnpm --filter @paperclipai/plugin-sdk build`
- `pnpm exec vitest run ui/src/components/MarkdownEditor.test.tsx
ui/src/components/Sidebar.test.tsx
ui/src/components/SidebarProjects.test.tsx ui/src/pages/Inbox.test.tsx
ui/src/components/DevRestartBanner.test.tsx
server/src/__tests__/dev-server-status.test.ts
server/src/__tests__/health-dev-server-token.test.ts
server/src/__tests__/plugin-routes-authz.test.ts` initially failed only
because plugin SDK `dist` was not built in the fresh worktree.
- Rerun after build: `pnpm exec vitest run
server/src/__tests__/plugin-routes-authz.test.ts` passed.
- The remaining targeted UI/dev-server tests passed on the first
post-install run.

## Visual Evidence

- Sidebar layout and plugin Work section: ![Sidebar
desktop](https://raw.githubusercontent.com/paperclipai/paperclip/pap-9861-ui-dev-qol/docs/pr-screenshots/pr-6384/sidebar-desktop.png)
- Inbox/task row selection and hover-state surface: ![Inbox rows
desktop](https://raw.githubusercontent.com/paperclipai/paperclip/pap-9861-ui-dev-qol/docs/pr-screenshots/pr-6384/inbox-rows-desktop.png)
- Dev restart banner desktop: ![Dev restart banner
desktop](https://raw.githubusercontent.com/paperclipai/paperclip/pap-9861-ui-dev-qol/docs/pr-screenshots/pr-6384/dev-restart-banner-desktop.png)
- Dev restart banner mobile: ![Dev restart banner
mobile](https://raw.githubusercontent.com/paperclipai/paperclip/pap-9861-ui-dev-qol/docs/pr-screenshots/pr-6384/dev-restart-banner-mobile.png)

## Risks

- Mostly UI/dev ergonomics with low data risk.
- Sidebar and inbox changes touch frequently used navigation surfaces,
so visual review on desktop/mobile is still useful.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5-based coding agent with local shell/git/tool use.
Exact hosted model ID and context-window size are not exposed by the
local Paperclip adapter runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-19 15:52:39 -05:00
Dotta d67347be77 [codex] Provider vault secrets UX (#6381)
## Thinking Path

> - Paperclip orchestrates AI agents that need scoped, auditable access
to secrets
> - Hosted and external deployments need provider vault configuration
without exposing secret values in Paperclip metadata
> - AWS Secrets Manager vault setup previously required too much manual
operator knowledge
> - Provider vault discovery and removal belong together as an
independent secrets-management improvement
> - This pull request adds AWS provider vault discovery/prefill plus
vault removal flows
> - The benefit is a safer operator path for configuring external secret
storage before higher-level cloud workflows depend on it

## What Changed

- Added shared validators/types for AWS provider vault discovery
payloads and safe provider metadata.
- Implemented AWS provider vault discovery preview on the server.
- Added provider vault removal service/route behavior.
- Added Secrets page UI for discovery prefill, removal messaging, and
related rendering coverage.
- Added Storybook provider-vault fixtures and captured screenshots for
the new UX states.

## Verification

- `pnpm install --frozen-lockfile --ignore-scripts`
- `pnpm exec vitest run packages/shared/src/validators/secret.test.ts
server/src/__tests__/aws-secrets-manager-provider.test.ts
server/src/__tests__/secrets-routes.test.ts
server/src/__tests__/secrets-service.test.ts
ui/src/pages/Secrets.render.test.tsx`
- Result: 4 files passed, 1 embedded Postgres-backed file skipped on
this host because local Postgres init was unavailable.
- `pnpm --filter @paperclipai/ui exec vitest run
src/pages/Secrets.render.test.tsx`
- `pnpm --filter @paperclipai/ui typecheck`
- Storybook screenshot capture against `Product/Secrets` on
`http://127.0.0.1:60381/iframe.html?id=product-secrets--secrets-inventory&viewMode=story&globals=theme:dark`

## Screenshots

Provider vaults tab after this change:

![Provider vaults
tab](https://raw.githubusercontent.com/paperclipai/paperclip/pap-9861-provider-vault-secrets/doc/screenshots/pr-6381/provider-vaults-tab.png)

AWS discovery candidate flow:

![AWS discovery candidate
flow](https://raw.githubusercontent.com/paperclipai/paperclip/pap-9861-provider-vault-secrets/doc/screenshots/pr-6381/aws-discovery-candidates.png)

Provider vault removal confirmation:

![Provider vault removal
confirmation](https://raw.githubusercontent.com/paperclipai/paperclip/pap-9861-provider-vault-secrets/doc/screenshots/pr-6381/remove-provider-vault-confirmation.png)

## Risks

- Secret provider metadata handling must remain non-sensitive;
validators reject credential-bearing Vault URLs and sensitive AWS
discovery keys.
- AWS discovery depends on deployment credentials being configured
correctly outside Paperclip-managed company secrets.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5-based coding agent with local shell/git/tool use.
Exact hosted model ID and context-window size are not exposed by the
local Paperclip adapter runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-19 15:50:23 -05:00
Dotta 9c29394f4d [codex] Allow cloud tenant import mutations without browser origin (#6378)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies.
> - Paperclip Cloud imports local company data into tenant Paperclip
stacks through trusted server-to-server calls.
> - Tenant imports authenticate as board actors with `source:
"cloud_tenant"` because they act on behalf of an authorized stack user.
> - The board mutation guard correctly protects browser session
mutations with trusted `Origin`/`Referer` checks.
> - But the guard treated trusted Cloud tenant calls like browser
session mutations, so server-to-server imports without a browser origin
failed with `403 Board mutation requires trusted browser origin`.
> - This pull request exempts trusted Cloud tenant actors from
browser-origin enforcement while preserving the session-backed browser
guard.
> - The benefit is that authorized Cloud imports can persist into tenant
Paperclip storage without weakening browser CSRF protections.

## What Changed

- Allow `req.actor.source === "cloud_tenant"` through
`boardMutationGuard` without requiring browser `Origin` or `Referer`
headers.
- Add a focused regression test for Cloud tenant POST mutations without
an origin.
- Preserve the existing session-backed rejection test for board
mutations that lack a trusted browser origin.

## Verification

- `pnpm exec vitest run
server/src/__tests__/board-mutation-guard.test.ts`
- Result: 10 tests passed.

## Risks

- Low risk: this only expands the existing non-browser exemption list to
trusted Cloud tenant actors that have already passed tenant-server-token
authentication.
- The browser-session path remains covered by the existing rejection
test, so missing-origin browser mutations still fail.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5 coding agent, tool-enabled local repository
editing and shell verification.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-05-19 14:25:58 -05:00
Dotta bfe6369ef5 Guard cheap recovery model usage (#6371)
## Thinking Path

> - Paperclip is the control plane that coordinates AI-agent work
through issues, heartbeats, comments, approvals, and auditable recovery
paths.
> - The affected subsystem is heartbeat/recovery orchestration,
especially the optional cheap model profile used for operational
recovery overhead.
> - Cheap recovery should repair status and liveness, but it must not
become the worker lane that writes deliverables, continues source work,
or propagates cheap execution hints into downstream retries.
> - The gap was that cheap-profile hints could follow recovery wake
contexts and assignment overrides farther than intended, making real
work eligible to run on the cheap model.
> - This pull request separates status-only cheap recovery from normal
source-work continuations, adds route guards for deliverable mutations
during cheap status-only runs, and documents the invariant.
> - The benefit is safer retry/recovery behavior: cheap runs can clean
up control-plane state, while any remaining source work resumes through
a normal/original model path.

## What Changed

- Added recovery model-profile work classes so status-only recovery
carries explicit guard context and normal-model continuations scrub
cheap hints.
- Updated heartbeat, productivity review, liveness continuation, and
recovery service wakeups to request cheap only for bounded status-only
recovery work.
- Blocked cheap status-only recovery runs from writing issue documents,
plans, attachments, work products, or assigning downstream work back to
`modelProfile: "cheap"`.
- Added/updated server tests for cheap profile propagation,
artifact/document guards, route authorization, retry scheduling, and
successful-run handoff behavior.
- Documented the recovery model-profile lane in
`doc/SPEC-implementation.md` and `doc/execution-semantics.md`.
- After rebasing onto current `public-gh/master`, stabilized the new
`InstanceSidebar` plugin-filter tests so the PR check lane stays green.

## Verification

- Local: `pnpm exec vitest run --config vitest.config.ts
src/services/recovery/model-profile-hint.test.ts
src/__tests__/issue-agent-mutation-ownership-routes.test.ts
src/__tests__/issue-document-restore-routes.test.ts` from `server/` - 3
files, 37 tests passed after final edits.
- Local: `pnpm exec vitest run --config vitest.config.ts
src/__tests__/heartbeat-process-recovery.test.ts` from `server/` - 44
tests passed after rerunning the cleanup-sensitive file alone.
- Local: `pnpm --filter @paperclipai/ui exec vitest run
src/components/InstanceSidebar.test.tsx` - 4 tests passed.
- Local: `pnpm --filter @paperclipai/server typecheck` - passed.
- Local: `pnpm --filter @paperclipai/ui typecheck` - passed.
- PR checks on latest head `6f8c3b1380f5bd872c6f49f6f7188ecf3bb6d263` -
all green, including `verify`, build, typecheck,
server/general/serialized tests, e2e, Snyk, and policy.
- Greptile: pass 3 returned Confidence Score 5/5 with zero unresolved
Greptile review threads.

## Risks

- Medium risk: recovery behavior is intentionally stricter, so any path
that incorrectly relies on cheap recovery to keep doing source work will
now need to hand back to a normal-model run.
- Low migration risk: no schema changes.
- No product UI changes; the UI file touched is a test-only
stabilization after rebasing onto current `master`.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex coding agent, GPT-5 model family (`gpt-5`), tool use and
local code execution enabled; context window not exposed in this
environment.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots (N/A: no product UI changes)
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-05-19 13:46:02 -05:00
Devin Foley e5a0f5debd fix(plugin): raise environmentProbe RPC timeout to 120s for cold-start sandboxes (#6289)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies
> - Companies provision execution environments via sandbox provider
plugins (Modal, Daytona, E2B, etc.)
> - At provision time, the server probes each plugin's environment /
sandbox-provider driver over a worker RPC to validate config
> - `workerManager.call()` defaults to a 30s timeout, but cold-start
sandboxes — Modal in particular — take ~31s to boot
> - Result: every fresh Modal environment probe fails with a worker RPC
timeout, blocking environment provisioning end-to-end
> - This PR passes `timeoutMs=120_000` to the two probe call sites
(`probePluginEnvironmentDriver`, `probePluginSandboxProviderDriver`)
> - The benefit is Modal — and any future provider with similar
cold-start latency — can be successfully probed without false-negative
timeout failures

## What Changed

- Pass `timeoutMs=120_000` to `workerManager.call()` in
`probePluginEnvironmentDriver`
(`server/src/services/plugin-environment-driver.ts`)
- Pass `timeoutMs=120_000` to `workerManager.call()` in
`probePluginSandboxProviderDriver` (same file)

## Verification

- Targeted unit tests:
  ```
  pnpm --filter @paperclipai/server exec vitest run \
    src/__tests__/plugin-environment-driver-seam.test.ts \
    src/__tests__/heartbeat-plugin-environment.test.ts
  ```
  5/5 tests pass.
- Manual: provision a fresh Modal sandbox environment from the UI.
Previously failed with a worker RPC timeout at ~30s; now succeeds.

## Risks

- Low risk. The change only raises a per-call timeout (default 30s →
explicit 120s) on two probe call sites. Fast providers are unaffected
since probe completes well below either bound. Worst case: a genuinely
hung worker now blocks the probe for 120s instead of 30s before giving
up — still bounded, and only on the provision-time probe path (not the
heartbeat/run path).

## Model Used

- Provider: Anthropic
- Model: `claude-opus-4-7` (Claude Opus 4.7, 1M context window)
- Capabilities: extended thinking, tool use, code execution
- Scope of AI assistance: the underlying 4-line code change was
human-authored by the committer; this PR (verification commands, message
structuring, and submission) was prepared with Claude per the
`paperclip-dev` skill.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [ ] I have added or updated tests where applicable — n/a, this is a
per-call timeout configuration bump; existing tests cover the probe call
path
- [x] If this change affects the UI, I have included before/after
screenshots — n/a, no UI change
- [ ] I have updated relevant documentation to reflect my changes — n/a,
the timeout is an internal worker-RPC tuning value with no documented
contract
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-18 09:32:12 -07:00
Dotta 5071c4c776 [codex] Add workspace diff viewer plugin (#6071)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies.
> - Operators need to inspect what agents changed inside execution and
project workspaces.
> - The existing workspace detail views did not provide a first-party
rich diff surface for staged, unstaged, head, renamed, binary,
oversized, and untracked changes.
> - The plugin system is the intended extension point for optional rich
UI surfaces.
> - This pull request adds a workspace diff plugin plus host services
and shared contracts so Changes tabs can render workspace diffs through
plugin slots.
> - The diff-renderer dependency should stay owned by the plugin package
rather than the core UI app.
> - The dependency surface must stay aligned with repository PR policy,
including intentionally omitting `pnpm-lock.yaml` from the PR.
> - The benefit is a more reviewable workspace surface without
hard-coding the renderer into every page.

## What Changed

- Added `@paperclipai/plugin-workspace-diff`, including diff
normalization, plugin manifest/worker/UI entrypoints, and focused plugin
tests.
- Kept `@pierre/diffs` scoped to `@paperclipai/plugin-workspace-diff`;
removed the core UI lab diff-renderer surface and direct UI package
dependency.
- Added shared workspace diff types and validators, plus plugin SDK
surface for workspace diff host services.
- Added server workspace diff service support and route coverage for
execution/project workspace diff flows.
- Wired Execution Workspace and Project Workspace Changes tabs to load
the diff plugin, including loading/error fallback behavior.
- Added UI tests and fixtures for the Changes tabs and plugin bridge
behavior.
- Added the new plugin package manifest to the Docker deps stage so PR
policy can validate dependency coverage.
- Addressed review hardening around empty untracked patches, workspace
path exposure, project workspace read capability checks, and default
base refs.

## Verification

- `pnpm --filter @paperclipai/plugin-workspace-diff test`
- `pnpm exec vitest run
packages/shared/src/validators/workspace-diff.test.ts
server/src/__tests__/workspace-diff-service.test.ts
ui/src/pages/ProjectWorkspaceDetail.test.tsx
ui/src/pages/ExecutionWorkspaceDetail.test.tsx`
- `pnpm exec vitest run ui/src/plugins/bridge.test.ts
server/src/__tests__/workspace-runtime-routes-authz.test.ts`
- `pnpm --filter @paperclipai/shared typecheck`
- `pnpm --filter @paperclipai/plugin-workspace-diff typecheck`
- `pnpm --filter @paperclipai/server typecheck`
- `pnpm --filter @paperclipai/ui typecheck`
- `node ./scripts/check-docker-deps-stage.mjs`
- Browser screenshot captured from the local worktree dev server:
https://files.catbox.moe/ofdpsp.png
- Confirmed branch is rebased onto `public-gh/master`,
`.github/workflows/pr.yml` is not included in the PR diff,
`ui/package.json` is not included in the PR diff, and `pnpm-lock.yaml`
is not included in the PR diff.

## Risks

- Medium UI integration risk: the Changes tab depends on the plugin slot
and host diff service path.
- Medium dependency risk: this adds `@pierre/diffs` in the plugin
package, but `pnpm-lock.yaml` is intentionally omitted per packaging
instructions because repository automation manages lockfile updates.
- Current CI blocker: downstream frozen installs fail until the
repository policy path for new plugin package dependencies is chosen.
- Diff rendering edge cases are covered for common working-tree and head
diff states, but very large repositories may still expose performance
limits.
- No migrations are included.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5 class coding model, tool-enabled local execution
environment. Exact context window was not exposed by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-18 08:50:06 -05:00
Dotta d734bd43d1 [codex] Roll up May 17 branch changes (#6210)
## Thinking Path

> - Paperclip is the control plane for autonomous AI companies, so agent
work needs visible ownership, recovery, and operator controls.
> - This local branch had accumulated several related control-plane
reliability and operator-experience fixes across recovery actions,
watchdog folding, model-profile defaults, mentions, markdown editing,
plugin launchers, and small UI polish.
> - The branch needed to be converted into a PR against the current
`origin/master` without losing dirty work or including lockfile/workflow
churn.
> - The safest standalone shape is a single rollup PR because the
recovery/server/UI files overlap heavily across the local commits and
splitting would create avoidable conflicts.
> - This pull request replays the local branch onto latest
`origin/master`, preserves the uncommitted work as logical commits, and
adds a Zod 4 validator compatibility fix found during verification.
> - The benefit is that the May 17 local branch can be reviewed and
merged as one coherent, conflict-free branch under the 100-file Greptile
limit.

## What Changed

- Rebased the local May 17 branch work onto current `origin/master` in a
dedicated worktree.
- Preserved and committed previously dirty changes for recovery retry
handling, plugin/sidebar launcher polish, and `.herenow` ignores.
- Added recovery-action behavior for returning source issues to `todo`
when retrying source-scoped recovery.
- Included the existing local recovery/liveness/watchdog fold, Codex
cheap-profile, markdown/mention, duplicate-agent, and UI polish commits
from the branch.
- Normalized shared validator `z.record(...)` schemas to explicit
string-key records for Zod 4 compatibility.
- Confirmed the PR has no `pnpm-lock.yaml` or `.github/workflows/*`
changes and stays below the 100-file Greptile limit.

## Verification

- `pnpm install --frozen-lockfile --ignore-scripts`
- `npm run install` in
`node_modules/.pnpm/sqlite3@5.1.7/node_modules/sqlite3` to build the
local native sqlite3 binding after installing with scripts disabled
- `pnpm exec vitest run packages/shared/src/validators/issue.test.ts
packages/shared/src/project-mentions.test.ts
packages/adapter-utils/src/server-utils.test.ts
server/src/__tests__/heartbeat-model-profile.test.ts
server/src/__tests__/issue-recovery-actions.test.ts
server/src/__tests__/issue-agent-mutation-ownership-routes.test.ts
server/src/__tests__/heartbeat-active-run-output-watchdog.test.ts
server/src/__tests__/plugin-local-folders.test.ts
ui/src/components/IssueRecoveryActionCard.test.tsx
ui/src/components/Sidebar.test.tsx
ui/src/components/SidebarAccountMenu.test.tsx
ui/src/components/IssueProperties.test.tsx
ui/src/components/MarkdownEditor.test.tsx
ui/src/components/MarkdownBody.test.tsx
ui/src/lib/duplicate-agent-payload.test.ts
ui/src/pages/Routines.test.tsx`
- First pass: 13 files passed with 201 passing tests; 3 server files
failed before sqlite3 native binding was built.
- After rebuilding sqlite3:
`server/src/__tests__/heartbeat-model-profile.test.ts`,
`server/src/__tests__/issue-recovery-actions.test.ts`, and
`server/src/__tests__/heartbeat-active-run-output-watchdog.test.ts`
passed/loaded; embedded Postgres tests were skipped by the local host
guard.
- `pnpm --filter @paperclipai/shared typecheck`
- `pnpm --filter @paperclipai/adapter-utils typecheck`
- `pnpm --filter @paperclipai/server typecheck`
- `pnpm --filter @paperclipai/ui typecheck`

## Risks

- Medium risk: this is a broad rollup PR across recovery semantics,
server tests, shared validators, and UI surfaces.
- Some embedded Postgres tests skipped locally due the host guard, so CI
should provide the stronger database-backed signal.
- UI changes were covered by component tests, but no browser screenshot
was captured in this PR creation pass.
- This branch may overlap with existing recovery/liveness PR work; merge
this PR independently or restack/close overlapping branches rather than
merging duplicate implementations together.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5-based coding agent, tool-enabled local repository
and GitHub workflow, medium reasoning effort.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-17 17:15:06 -05:00
Dotta 705c1b8d81 [codex] Add routine env secrets support (#6212)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies.
> - Scheduled routines are the control-plane path for recurring agent
work.
> - Routines already had dispatch/history, but their runtime environment
did not carry routine-owned secret bindings through execution.
> - Operators need routine-specific secrets that can override
project/agent env without exposing secret values in history, logs, or
access events.
> - This pull request adds the routine env runtime contract, wires it
into execution, and makes the routine UI/history surfaces show safe
secret metadata.
> - The benefit is that routine executions can use scoped secret refs
predictably while preserving company boundaries and auditability.

## What Changed

- Added routine env persistence/runtime support, including
`routines.env`, `routine_runs.routine_revision_id`, revision snapshots,
and idempotent migration `0086_routine_env_runtime_contract`.
- Resolved routine env during heartbeat adapter config assembly with
precedence `agent < project < routine` and secret access events recorded
against the routine consumer.
- Added secret binding synchronization for routine create/update/restore
flows and guarded cross-company, missing, disabled, and deleted secret
cases.
- Added a Secrets tab to routine detail, env/secret history diff
rendering, and Storybook coverage for the new UI states.
- Added server/UI regression tests, including an embedded-Postgres QA
path for routine secret execution and restore behavior.
- Updated implementation/database docs for routine env and
secret-binding behavior.

## Verification

- `pnpm install --frozen-lockfile` after rebasing onto
`public-gh/master` to refresh workspace links for the newly-added
upstream Grok adapter package.
- `pnpm exec vitest run
server/src/__tests__/heartbeat-project-env.test.ts
server/src/__tests__/routines-service.test.ts
server/src/__tests__/secrets-service.test.ts
server/src/__tests__/qa-routine-secrets-e2e.test.ts
ui/src/components/RoutineHistoryTab.test.tsx` passed: 5 files, 92 tests.
- `pnpm -r typecheck` passed across the workspace.
- `pnpm build` passed. Vite emitted the existing
large-chunk/dynamic-import warnings.
- UI screenshots were captured locally during QA in
`artifacts/pap-9521/` and `artifacts/pap-9522/`; generated screenshots
are not committed to avoid adding binary artifacts to the repo.

## Risks

- Migration risk is limited by `IF NOT EXISTS` guards for the new
columns, FK, and index, and the migration is ordered as `0086`
immediately after upstream `0085`.
- Runtime behavior changes env precedence for routine executions by
adding routine env as the highest-precedence layer; tests cover
agent/project/routine precedence.
- Secret handling is security-sensitive; tests cover value-free
manifests/events/errors, disabled/missing/deleted secrets, and
cross-company rejection.
- UI history now renders routine env/secret diffs; tests and Storybook
stories cover the main rendering paths.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex coding agent based on GPT-5, with shell/tool use and
medium reasoning effort.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-17 16:30:34 -05:00
Devin Foley ab8b471685 Add built-in grok_local adapter (#6087)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies, so
adapter quality directly affects what runtimes the control plane can
supervise.
> - Local CLI adapters are one of the core execution surfaces because
they turn real coding tools into Paperclip-managed employees with
heartbeats, transcripts, and reviewability.
> - Grok Build was installed on the Paperclip host, but Paperclip had no
built-in `grok_local` adapter, so the runtime could not be configured
through the normal server/UI/CLI adapter path.
> - That gap needed to be closed with the same built-in registry,
environment diagnostics, transcript parsing, and skill/instructions
behavior that the other local adapters already rely on.
> - After the initial adapter landed, a real follow-up run showed that
Grok streaming text was being rendered one fragment per line, which made
transcripts harder to read even though the runtime itself was working.
> - This pull request adds the built-in `grok_local` adapter end-to-end
and then fixes the transcript parser so streamed Grok output is
coalesced into readable assistant/thinking blocks.
> - The benefit is that Grok Build becomes a first-class Paperclip
runtime with a usable operator experience instead of a partially wired
runtime with noisy transcript output.

## What Changed

- Added a new built-in `@paperclipai/adapter-grok-local` package with
server, UI, and CLI entrypoints.
- Implemented Grok execution, session handling, environment diagnostics,
config building, skill syncing, and parser coverage inside the new
adapter package.
- Registered `grok_local` across the built-in adapter inventories and
capability/display metadata in server, UI, CLI, and shared constants.
- Added adapter route coverage for the new built-in type.
- Fixed Grok transcript readability by emitting streamed `text` and
`thought` fragments as deltas so the shared transcript builder coalesces
them into readable message blocks.
- Added regression tests for the Grok parser and transcript coalescing
behavior.

## Verification

- `pnpm vitest run
packages/adapters/grok-local/src/ui/parse-stdout.test.ts
ui/src/adapters/transcript.test.ts`
- `pnpm --filter @paperclipai/adapter-grok-local build`
- Manual runtime verification on the Paperclip host during
implementation and follow-up review:
  - confirmed the Grok CLI was installed and authenticated
- confirmed the worktree dev server could be restarted cleanly and
health-checked after the parser follow-up
- No screenshots attached. This change is primarily adapter plumbing
plus transcript formatting behavior; reviewers can verify via the
Grok-backed run surfaces directly.

## Risks

- This adds a new built-in adapter, so any missed registration surface
could create inconsistencies between server, UI, and CLI behavior.
- The adapter depends on Grok Build's current event/output shape; if
upstream Grok streaming JSON changes, transcript parsing or session
extraction may need follow-up updates.
- The transcript readability fix intentionally changes how Grok
fragments are grouped, so any downstream code that implicitly expected
one entry per fragment would behave differently.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex via Paperclip `codex_local` agent runtime.
- GPT-5-class coding model with tool use, shell execution, file editing,
and repo inspection enabled.
- Exact backend model ID/context window were not surfaced to the agent
in this Paperclip session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] If this change affects the UI, I have included before/after
screenshots
- [ ] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-05-16 09:51:09 -07:00
Dotta 4c47eb46c3 [codex] Add multilingual issue preservation coverage (#6069)
## Thinking Path

> - Paperclip orchestrates AI agents for autonomous companies.
> - Agents and board operators coordinate through company-scoped issues,
comments, documents, and heartbeat wake payloads.
> - Chinese, Japanese, and Hindi text needs to survive the full issue
lifecycle without normalization or prompt serialization damage.
> - The riskiest paths are board issue creation, server
issue/comment/document round-tripping, and scoped wake prompt rendering.
> - This pull request adds focused regression coverage across those
surfaces.
> - The benefit is higher confidence that multilingual operators and
agents can create, search, comment on, complete, and wake on issues
using non-Latin text.

## What Changed

- Added adapter-utils wake payload and prompt rendering coverage for
Chinese, Japanese, and Hindi issue/comment text.
- Added UI New Issue dialog coverage proving multilingual title and
description text is submitted unchanged.
- Added server route coverage that round-trips multilingual issue text
through create, search, comments, documents, completion comments, and
heartbeat context.
- Addressed Greptile feedback by using a typed storage mock and
splitting the server route integration path into smaller ordered
assertions.

## Verification

- `pnpm exec vitest run packages/adapter-utils/src/server-utils.test.ts
ui/src/components/NewIssueDialog.test.tsx
server/src/__tests__/multilingual-issues-routes.test.ts`
- Result: 3 test files passed, 51 tests passed.

## Risks

- Low risk: this PR adds regression coverage only and does not change
runtime behavior.
- The new server test uses embedded Postgres support and skips on
unsupported hosts using the existing helper pattern.
- No migrations are included.
- No `pnpm-lock.yaml` changes are included.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected - check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5 based coding agent, with shell, git, Vitest, and
GitHub connector/CLI tool use.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-05-15 12:49:57 -05:00
Dotta eb38b226c2 Fix LLM Wiki package and migration validation (#6010)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies.
> - Plugins extend the control plane with optional capabilities such as
LLM Wiki.
> - LLM Wiki needs its package assets and plugin-owned database
migrations to work when installed from the packaged plugin.
> - The bundled spaces migration used validation-hostile dynamic SQL,
and the packaged plugin could omit non-dist runtime assets.
> - This pull request makes the LLM Wiki package include its required
assets and cuts the spaces migration over to explicit, idempotent SQL
that passes the production plugin database validator.
> - The benefit is a simpler plugin install path that validates and
applies the bundled LLM Wiki migrations without adding plugin-specific
legacy handling to Paperclip core.

## What Changed

- Added the LLM Wiki package asset allowlist so agents, migrations,
skills, templates, dist output, and README are included when packaged.
- Renamed the bootstrap `.gitignore` template to `gitignore.template`
and updated the runtime lookup so package tooling does not drop the
hidden template file.
- Relaxed plugin migration validation to allow namespace-scoped
`INSERT`/`UPDATE` backfills and `CREATE INDEX` statements while
continuing to reject destructive or cross-namespace SQL.
- Replaced the LLM Wiki spaces migration's dynamic constraint-drop DO
block with explicit `DROP CONSTRAINT IF EXISTS` statements.
- Replaced fragile regex-source dispatch in SQL reference extraction
with explicit capture-group descriptors.
- Added regression coverage that applies the bundled LLM Wiki migrations
through the production validator and checks the expected constraints.

## Verification

- `pnpm exec vitest run --project @paperclipai/server
server/src/__tests__/plugin-database.test.ts --pool=forks
--poolOptions.forks.isolate=true`
- `pnpm --filter @paperclipai/plugin-llm-wiki build`
- `git diff --check`
- Confirmed `pnpm-lock.yaml` is not included in the branch diff.

## Risks

- Low migration risk for current users: LLM Wiki spaces are new, so this
intentionally cuts over the plugin migration instead of adding legacy
handling in core.
- Validator behavior is broader than before, but still requires fully
qualified plugin namespace targets, blocks deletes/destructive DDL, and
keeps public table access read-only and allowlisted.

> Checked [`ROADMAP.md`](ROADMAP.md); this is a targeted plugin
packaging/migration fix and does not duplicate planned core feature
work. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5 based coding agent, tool-enabled local repo
access, reasoning mode managed by the Paperclip/Codex runtime. Exact
context window was not surfaced in this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-15 10:20:02 -05:00
Dotta 03ad5c5bea [codex] Add issue document locking (#6009)
## Thinking Path

> - Paperclip orchestrates AI-agent companies through company-scoped
issues, comments, and issue documents.
> - Issue documents are the durable place where plans, handoffs, and
other work artifacts are revised over time.
> - Some documents need to be preserved as operator-approved snapshots
while agents continue working on the same issue.
> - Without document locking, a later board or agent write can overwrite
the document key that reviewers expected to remain stable.
> - This pull request adds board-managed issue document locks and makes
agent writes to locked keys create a derived document instead of
mutating the locked document.
> - The benefit is safer document handoffs: approved or frozen issue
documents stay immutable until the board explicitly unlocks them.

## What Changed

- Added `locked_at`, `locked_by_agent_id`, and `locked_by_user_id`
document fields plus migration `0085_tranquil_the_executioner.sql`.
- Added document lock/unlock service behavior, route endpoints, activity
events, and locked-document write protections.
- Made agent document writes to locked keys create a new derived key
such as `plan-2` rather than overwriting the locked document.
- Surfaced lock state through shared issue document types, UI API
methods, document header lock controls, and activity formatting.
- Added server and UI tests for lock/unlock behavior, locked document
immutability, and UI action visibility.
- Updated `doc/SPEC-implementation.md` with the V1 document lock
contract and endpoints.

## Verification

- `git rebase public-gh/master` completed cleanly after committing the
branch changes.
- `git diff --check` passed before commit.
- `pnpm run preflight:workspace-links && pnpm exec vitest run
server/src/__tests__/documents-service.test.ts
server/src/__tests__/issue-agent-mutation-ownership-routes.test.ts
ui/src/components/IssueDocumentsSection.test.tsx
ui/src/components/IssueContinuationHandoff.test.tsx
ui/src/lib/document-revisions.test.ts` passed: 5 files, 32 tests.

## Risks

- Medium risk because this changes the document persistence contract and
adds a migration.
- The migration uses `ADD COLUMN IF NOT EXISTS` and guarded foreign-key
creation so it remains safe for users who may have already applied an
earlier copy of the migration.
- Locked documents intentionally reject board edits/deletes/restores
until unlocked; any existing workflows that expected direct overwrite
need to unlock first.
- Agent writes to locked keys now create derived documents, which may
create extra issue documents when agents retry locked writes.

## Model Used

- OpenAI Codex coding agent based on GPT-5, with tool use and local code
execution in the Paperclip worktree.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-15 08:54:55 -05:00
Devin Foley 901c088e14 fix: propagate projectId into wakeup context and support identifier lookup (#6026)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies
> - The server's heartbeat/wakeup pipeline resolves which project
workspace an agent run should bind to
> - `enqueueWakeup` resolves an issue (and therefore a project) before
scheduling a run, but the resolved `projectId` was never written back
into `enrichedContextSnapshot.projectId`, so `resolveWorkspaceForRun`
always saw `contextProjectId === null`
> - When the `issueProjectRef` DB lookup also returned null (e.g.
identifier-style id like `ENV-13`, not a UUID), workspace resolution
fell through to the `agent_home` fallback instead of the correct project
workspace
> - Surfaced while running the QA matrix on sandbox/SSH — runs were
ending up in the wrong workspace
> - This pull request stores the resolved `projectId` back into context
and replaces the raw UUID-only DB query with `issuesSvc.getById`, which
accepts both UUIDs and identifiers and canonicalizes `context.issueId` /
`context.taskId` to the UUID on identifier hits
> - The benefit is that wakeups triggered with identifier-style ids
correctly bind to their project workspace instead of silently degrading
to `agent_home`

## What Changed

- In `enqueueWakeup`, after the issue resolves, write `projectId` back
into `enrichedContextSnapshot.projectId` so downstream workspace
resolution can use it.
- Replace the raw UUID-only DB query for the issue with
`issuesSvc.getById`, which handles both UUIDs and identifiers (e.g.
`ENV-13`).
- On an identifier hit, canonicalize `context.issueId` and
`context.taskId` to the resolved UUID.

## Verification

- Trigger a wakeup with an identifier-style id (`ENV-13`) on the dev
instance and confirm the run binds to the correct project workspace
instead of `agent_home`.
- Confirm UUID-style wakeups still resolve to the same project workspace
as before.

## Risks

- Low risk. Scope is a single function in
`server/src/services/heartbeat.ts` (+20/-7). Failure mode if regressed
is the prior behavior (fallback to `agent_home`).

## Model Used

- Claude (Anthropic), `claude-opus-4-7`, via Claude Code / Paperclip
`claude_local` adapter.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [ ] I have run tests locally and they pass
- [ ] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [ ] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-14 22:09:16 -07:00
Dotta 333a16b035 Fix company export with missing run logs (#5960)
## Thinking Path

> - Paperclip is the control plane for autonomous AI companies.
> - Company export/import lets operators move company state, including
issue threads and agent execution context, between Paperclip instances.
> - Issue comments can be enriched by nearby heartbeat run logs so
exported threads preserve useful agent/run attribution metadata.
> - Some local instances can have heartbeat run database rows whose
local log files were deleted or never copied into the current workspace.
> - The export path should still include the original user comments
instead of failing because optional run-log metadata is unavailable.
> - This pull request makes comment run-log metadata derivation tolerate
missing local log files, logs the missing-file condition for operators,
and adds a regression test.
> - The benefit is safer company exports for real instances with
incomplete local run-log storage.

## What Changed

- Treat missing local heartbeat run logs as absent optional metadata
while listing issue comments.
- Emit a structured warning with `runId` and `logRef` when optional
comment-attribution log content is missing.
- Preserve the existing error behavior for non-404 run-log read
failures.
- Added a regression test proving user comments still list when a
candidate attribution run has a missing local log reference.

## Verification

- `pnpm exec vitest run server/src/__tests__/issues-service.test.ts -t
"candidate attribution run log is missing"` passed: 1 selected test
passed, 47 skipped.
- `pnpm --filter @paperclipai/server typecheck` passed.
- Greptile Review passed with Confidence Score 5/5 and zero unresolved
threads on commit `f68cac02bf98d7d31e7831e5bdfa95cffa85e254`.
- GitHub PR workflow run succeeded: `policy`, `verify`, four serialized
server suites, `e2e`, and `Canary Dry Run` all passed.
- `security/snyk (cryppadotta)` passed.
- Confirmed this branch is on top of `public-gh/master` and
`pnpm-lock.yaml` is not in the PR diff.

## Risks

- Low risk. The change only softens optional comment metadata derivation
for 404/missing local log files; other log read errors still throw.
- Exported comments in this edge case may lack derived run metadata, but
they remain visible/exportable instead of failing the request.
- Operators may see new warnings when historical run-log references
point to missing local files; those warnings indicate degraded optional
metadata, not data loss.

## Model Used

- OpenAI Codex, GPT-5 coding agent in this Paperclip heartbeat, with
shell/git/GitHub CLI tool use.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-14 08:37:04 -05:00
Devin Foley 1bd44c8a0d Harden Cloudflare sandbox execution (#5967)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies.
> - Remote-managed adapters need sandbox/environment execution to behave
like real agent runs, not just local host probes.
> - The Cloudflare sandbox path was the weakest leg in the SSH +
Cloudflare QA matrix because bridge execution could truncate output,
time out long-running installs, and under-provision the worker instance.
> - That made several adapters fail for reasons unrelated to their
actual business logic, which blocks confidence in Paperclip's non-local
environment model.
> - This pull request hardens the Cloudflare bridge/runtime path and
adjusts sandbox probe budgets so adapter verification matches the
measured behavior of the fixed environment.
> - It also corrects the Pi sandbox install command so the QA matrix
exercises a real, supported install path.
> - The benefit is a materially more reliable SSH + Cloudflare adapter
matrix with fewer false negatives and clearer failure boundaries.

## What Changed

- Switched the Cloudflare bridge worker instance type to `standard-2`
for the QA-matrix execution path.
- Raised Cloudflare bridge/plugin-worker timeout budgets and added SSE
keepalives so long-running install/exec calls can complete instead of
dying at the transport layer.
- Fixed Cloudflare bridge-channel command handling to avoid dropped
final stdout chunks on short-lived execs.
- Made Claude, OpenCode, and Cursor sandbox probe timeouts
configurable/sandbox-aware, then tightened the defaults to the measured
post-fix range.
- Updated the Pi sandbox install command to use the package currently
installed by the official `pi.dev` installer, pinned to a specific npm
version.
- Added/updated tests around Cloudflare bridge behavior and adapter
sandbox probe paths.

## Verification

- `pnpm --filter @paperclipai/adapter-claude-local typecheck`
- `pnpm --filter @paperclipai/adapter-opencode-local typecheck`
- `pnpm --filter @paperclipai/adapter-cursor-local typecheck`
- `pnpm vitest run packages/adapters/cursor-local
packages/adapters/claude-local packages/adapters/opencode-local
packages/adapters/pi-local packages/plugins/sandbox-providers/cloudflare
server/src/services/__tests__/plugin-worker-manager.test.ts`
- Manual QA on the dedicated dev instance using the SSH + Cloudflare
environment matrix (`ENV-29` through `ENV-40`). Clean end-to-end passes:
SSH `claude_local`, `codex_local`, `cursor`, `gemini_local`; Cloudflare
`claude_local`, `codex_local`, `cursor`, `gemini_local`.

## Risks

- Cloudflare sandbox cost increases because the bridge worker now runs
on `standard-2` instead of `lite`.
- Higher timeout ceilings can delay surfacing truly hung Cloudflare
bridge calls, even though they remove transport-level false negatives.
- The manual heartbeat matrix still exposed follow-on
execution/sync/disposition bugs in `opencode_local` and `pi_local`;
those are not fixed by this PR.

## Model Used

- OpenAI `gpt-5.4` via Paperclip `codex_local`, reasoning effort `high`,
tool use enabled, repo search enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots (not applicable)
- [x] I have updated relevant documentation to reflect my changes (not
applicable)
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-13 22:00:10 -07:00
Dotta 4142559c37 [codex] Add blocked inbox attention view (#5603)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies through
company-scoped issues, comments, approvals, and execution workspaces.
> - Operators need the Inbox to show not only active work, but also
blocked work that may need human or agent attention.
> - The existing inbox experience did not have a dedicated blocked-work
surface, so blocked tasks were harder to triage and resume deliberately.
> - Backend consumers also needed a compact attention signal that
distinguishes actionable blockers from covered or waiting blocker
states.
> - This pull request adds a Blocked Inbox tab backed by issue
blocker-attention metadata, shared validators, and UI helpers.
> - The benefit is a clearer triage path for stalled or blocked
Paperclip work without exposing external wait internals in the
operator-facing UI.

## What Changed

- Added shared issue blocker-attention types, validators, and exports
for the API/UI contract.
- Added backend blocker-attention computation and issue route support
for blocked inbox data.
- Added the Blocked Inbox tab, blocked reason chips, filtering/search
UI, responsive layouts, and Storybook stories.
- Updated inbox helpers and page behavior so toolbar controls only
appear where they apply.
- Added coverage for shared validators, server blocker-attention
behavior, blocked inbox UI helpers/components, and the Inbox page.
- Added a screenshot helper script for the blocked inbox Storybook
stories.
- Addressed Greptile feedback by making urgency sorting deterministic
for null stop times, avoiding full blocked-inbox list enrichment for
counts, and hardening the screenshot helper.

## Verification

- Rebased the branch cleanly onto `public-gh/master`.
- Confirmed the diff does not include `pnpm-lock.yaml`.
- Confirmed the diff does not include database migration files.
- Ran `pnpm exec vitest run packages/shared/src/validators/issue.test.ts
server/src/__tests__/issue-blocker-attention.test.ts
ui/src/components/BlockedInboxView.test.tsx
ui/src/components/BlockedReasonChip.test.tsx
ui/src/lib/blockedInbox.test.ts ui/src/lib/inbox.test.ts
ui/src/pages/Inbox.test.tsx`.
- Ran `pnpm --filter @paperclipai/shared typecheck && pnpm --filter
@paperclipai/server typecheck && pnpm --filter @paperclipai/ui
typecheck`.
- Checked `ROADMAP.md`; this is scoped inbox/operator triage work and
does not duplicate a listed roadmap feature.
- Greptile Review is green on the latest head and all four Greptile
review threads are resolved.
- GitHub PR checks are green on the latest head: policy, security/snyk,
e2e, verify, Canary Dry Run, Greptile Review, and serialized server
suites 1/4 through 4/4.

## Risks

- Medium review surface because this touches the shared issue contract,
server issue services, and the Inbox UI together.
- Blocker-attention classification may need product tuning after
operators use it on real blocked queues.
- UI screenshots were not attached in this PR-opening pass; the branch
includes `scripts/screenshot-blocked-inbox.mjs` and Storybook stories
for visual capture.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI Codex, GPT-5-based coding agent with shell, git, GitHub CLI,
GitHub connector, and Paperclip API tool use. Reasoning mode: medium.
Context window: not exposed by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-13 16:41:36 -05:00
Dotta d1a8c873b2 fix(remote-sandbox): harden host workspace resumes (#5922)
## Thinking Path

> - Paperclip orchestrates AI agents through a control plane while
adapters execute work in local, remote, or sandboxed runtimes.
> - Remote sandbox execution depends on a strict host-versus-remote
workspace boundary: the host prepares/restores files, while the adapter
command runs inside the sandbox cwd.
> - Jannes' PR #5823 identified host-side failure modes that were not
covered by replacement PR #5822.
> - Persisting a remote pod cwd in session params could poison the next
host heartbeat resume and make Paperclip inspect or upload system temp
roots.
> - Plugin sandbox providers also need a narrow way to receive
model-provider API keys without exposing the full server environment to
every plugin worker.
> - This pull request ports the host-side fixes from #5823 in the
current codebase style, with focused regression coverage.
> - The benefit is safer remote sandbox resumes and plugin worker
environment handling without broadening core plugin privileges.

## What Changed

- Persist host workspace cwd, not remote sandbox cwd, in `claude_local`
session params while retaining remote execution identity metadata.
- Reject saved session cwds that point at system roots before heartbeat
falls back to agent home workspace.
- Skip sockets, FIFOs, devices, and other non-file entries during
workspace restore snapshot capture/comparison.
- Pass a small model-provider API-key allowlist only to plugins
declaring `environment.drivers.register`.
- Added focused regression tests for remote Claude session params,
unsafe session cwd detection, plugin worker env filtering, and non-file
snapshot entries.

Credits: ports host-side fixes from Jannes' #5823.

## Verification

- `pnpm vitest run
packages/adapter-utils/src/workspace-restore-merge.test.ts
server/src/services/session-workspace-cwd.test.ts
server/src/__tests__/claude-local-execute.test.ts
server/src/__tests__/plugin-database.test.ts` (25 passed, 7 skipped by
existing embedded-Postgres host guard)
- `pnpm --filter @paperclipai/adapter-utils typecheck`
- `pnpm --filter @paperclipai/adapter-claude-local typecheck`
- `pnpm --filter @paperclipai/server typecheck`

## Risks

- Low risk: changes are scoped to remote sandbox/session metadata,
workspace snapshot filtering, and plugin worker env setup.
- Sandbox-provider plugins now receive only the explicit model-provider
key allowlist; any provider needing another key name will need a
deliberate allowlist update.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5-based coding agent, tool-enabled local code
execution and repository editing.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-13 16:23:04 -05:00
Dotta eb452fba30 Fix comment date binding regression (#5919)
## Thinking Path

> - Paperclip is the control plane for autonomous AI companies, and
issue comments are the primary durable communication surface between
operators and agents.
> - Commit `c445e592` (`fix(ui): fix message attribution for
agent-posted comments with user author IDs (#5780)`) added server-side
derived attribution for historical comments by scanning heartbeat runs
near comment timestamps.
> - That scan accidentally bound JavaScript `Date` objects directly into
postgres-js SQL fragments for the run timestamp window.
> - On real Postgres, that can fail while listing issue comments with
`ERR_INVALID_ARG_TYPE`, which makes comments disappear from issue pages
such as `PAP-9284`.
> - This pull request keeps the attribution behavior intact while
changing only the broken timestamp binding path.
> - The benefit is that comments load again without weakening the
conservative attribution recovery introduced by `c445e592`.

## What Changed

- Convert the derived-attribution heartbeat-run window bounds to ISO
timestamp strings before binding them into SQL, with explicit
`::timestamptz` casts.
- Add an embedded Postgres regression that inserts a heartbeat run and
user-authored comment, then verifies `issueService.listComments()`
returns the comment while the attribution scan runs.
- Delete `heartbeat_runs` during the issue service test cleanup before
deleting agents so the new test data does not leak across cases.

## Verification

- `pnpm exec vitest run server/src/__tests__/issues-service.test.ts -t
"lists user comments when derived run attribution scans a timestamp
window"`
- `pnpm --filter @paperclipai/server typecheck`
- `git diff --check`

## Risks

- Low risk. The change is limited to how timestamp parameters are bound
for an existing query.
- The derived attribution logic remains conservative and still requires
exact run-log proof before relabeling a comment.
- The regression uses embedded Postgres so it covers the postgres-js
binding path that failed in production-like local runs.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex via the Paperclip `codex_local` adapter; GPT-5
coding-agent family with local terminal, file-editing, and git/GitHub
CLI tool use. Exact hosted model deployment ID is not exposed by this
local adapter runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots (not applicable: server-side comment API bugfix)
- [x] I have updated relevant documentation to reflect my changes (not
applicable: no documented behavior or command changed)
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-13 12:56:51 -05:00
Dotta b947a7d76c [codex] Improve local plugin development workflow (#5821)
## Thinking Path

> - Paperclip is the control plane for autonomous AI-agent companies.
> - Plugins are the extension point for adding capabilities without
expanding the core product surface.
> - Local plugin development needed a tighter CLI-first loop so plugin
authors can scaffold, run, install, inspect, and reload plugins without
reaching into internal package paths.
> - The server plugin install path also needed local-path handling that
keeps plugin identity, dashboard routes, and development watchers
coherent.
> - This pull request adds the CLI scaffold/install workflow, fixes the
server and SDK edge cases that blocked that loop, and updates the
agent-facing plugin creation skill and docs.
> - The benefit is that contributors can develop plugins from local
folders with a documented, repeatable happy path.

## What Changed

- Added `paperclipai plugin init` coverage and CLI wiring for local
plugin scaffolding.
- Improved local plugin install handling, plugin key route resolution,
dashboard capability behavior, and dev watcher startup/reload behavior.
- Fixed plugin SDK worker entrypoint validation for symlinked package
layouts.
- Added targeted tests for plugin init, server plugin authz/watcher
behavior, SDK worker host validation, and the authoring smoke example.
- Added a short local plugin development guide and refreshed the plugin
authoring guide plus `paperclip-create-plugin` skill instructions.

## Verification

- `pnpm run preflight:workspace-links && pnpm --filter
@paperclipai/plugin-sdk build && pnpm --filter
@paperclipai/create-paperclip-plugin typecheck && pnpm --filter
paperclipai typecheck && pnpm --filter @paperclipai/plugin-sdk typecheck
&& pnpm --filter @paperclipai/server typecheck`
- `pnpm exec vitest run --project paperclipai
cli/src/__tests__/plugin-init.test.ts`
- `pnpm exec vitest run --project @paperclipai/plugin-sdk
packages/plugins/sdk/tests/worker-rpc-host.test.ts`
- `pnpm exec vitest run --project @paperclipai/server
server/src/__tests__/plugin-dev-watcher.test.ts --pool=forks
--poolOptions.forks.isolate=true`
- `pnpm exec vitest run --project @paperclipai/server
server/src/__tests__/plugin-routes-authz.test.ts --pool=forks
--poolOptions.forks.isolate=true`
- `pnpm --dir packages/plugins/examples/plugin-authoring-smoke-example
test`
- Confirmed `pnpm-lock.yaml` is not included in the PR diff.

## Risks

- Medium risk: this touches plugin install routing, CLI command
behavior, and the local development watcher.
- Local path plugin installs execute trusted local code by design; the
new docs call out that trust boundary.
- No database migrations are included.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5 coding agent, tool-enabled local shell and git
workflow, medium reasoning effort. Context window details were not
exposed in this runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

UI screenshots: not applicable; this PR changes CLI/server/plugin docs
and tests, not board UI rendering.

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-12 17:38:24 -05:00
Dotta 0808b388ee [codex] Add source-scoped recovery actions (#5599)
## Thinking Path

> - Paperclip is a control plane for autonomous AI companies, where work
must end with a clear disposition rather than ambiguous agent liveness.
> - Recovery currently detects stalled or missing-next-step issues, but
source issue recovery can become split across child recovery issues,
blockers, and comments.
> - That makes it harder for operators and agents to see who owns
recovery and what exact action is needed on the original issue.
> - Source-scoped recovery actions give the original issue a first-class
active recovery state with owner, evidence, wake policy, and resolution
outcome.
> - This pull request adds the recovery-action data model, backend
reconciliation and resolution APIs, and board UI indicators/actions.
> - The benefit is clearer stalled-work recovery without losing source
issue context or relying on comments as the liveness path.

## What Changed

- Added the `issue_recovery_actions` schema, shared
types/constants/validators, and an idempotent
`0084_issue_recovery_actions` migration ordered after current `master`
migrations.
- Updated stranded/missing-disposition recovery to create source-scoped
recovery actions, wake the recovery owner on the source issue, and avoid
locking the source issue for recovery-action wakes.
- Added API support for reading active recovery actions on issue
detail/list surfaces and resolving them with restored, blocked,
cancelled, or false-positive outcomes.
- Require blocked recovery resolutions to have an unresolved first-class
blocker, and removed the UI shortcut that could mark recovery blocked
without a blocker selection path.
- Surfaced recovery indicators/actions in the issue UI, blocker notices,
active run panels, issue rows, and Storybook coverage.
- Updated docs and focused tests for recovery semantics, ownership,
races, stale comments, and UI behavior.

## Verification

- `pnpm exec vitest run
server/src/__tests__/issue-recovery-actions.test.ts
server/src/__tests__/heartbeat-process-recovery.test.ts
ui/src/components/IssueRecoveryActionCard.test.tsx
ui/src/components/IssueBlockedNotice.test.tsx ui/src/api/issues.test.ts`
— 5 files, 72 tests passed.
- `pnpm --filter @paperclipai/shared typecheck` — passed.
- `pnpm --filter @paperclipai/db typecheck` — passed, including
migration numbering check.
- `pnpm --filter @paperclipai/server typecheck` — passed.
- `pnpm --filter @paperclipai/ui typecheck` — passed.
- Follow-up verification after blocker-resolution guard: `pnpm exec
vitest run server/src/__tests__/issue-recovery-actions.test.ts
ui/src/components/IssueRecoveryActionCard.test.tsx
ui/src/api/issues.test.ts` — 3 files, 27 tests passed.
- Follow-up `pnpm --filter @paperclipai/server typecheck` — passed.
- Follow-up `pnpm --filter @paperclipai/ui typecheck` — passed.
- UI states are available in
`ui/storybook/stories/source-issue-recovery.stories.tsx`; screenshot
capture helper is `scripts/screenshot-recovery-card.cjs`.

## Risks

- Medium: recovery behavior changes from child recovery issue ownership
toward source-scoped actions, so operators may see stalled-work state in
new places.
- Migration risk is mitigated by using the next migration slot after
`master` and making the table/constraints/index creation idempotent for
anyone who previously applied the old branch-local
`0082_dizzy_master_mold` migration.
- Existing child recovery issue paths are still guarded for
already-created recovery issues, but new source-scoped flows should be
watched in CI and Greptile review.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5 coding agent, tool use enabled for shell, Git,
GitHub, and local test execution. Context window not exposed by the
runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-12 09:37:15 -05:00
Devin Foley c445e59256 fix(ui): fix message attribution for agent-posted comments with user author IDs (#5780)
## Thinking Path

> - Paperclip’s issue chat is an audit surface: reviewers need to trust
who actually authored a message.
> - Some historical agent comments were persisted with `authorUserId`
and no surviving `createdByRunId`, so the UI rendered real agent output
as if it came from the board user.
> - A pure timestamp-window fallback is too risky because human
reviewers can comment while agents are running.
> - The safe recovery path is to derive attribution only when the server
can prove it from same-issue run logs that include the exact posted
comment id, then let the chat renderer prefer that recovered agent
attribution.
> - This keeps historical threads trustworthy without mutating old
database rows or guessing in ambiguous cases.

## What Changed

- Added shared `IssueComment` fields for derived attribution so server
and UI can carry recovered `derivedAuthorAgentId`,
`derivedCreatedByRunId`, and `derivedAuthorSource` consistently.
- Added server-side attribution recovery in
`server/src/services/issues.ts` that reads same-issue run logs and only
derives agent authorship when a run log contains the exact `comment id:
...` emitted during posting.
- Updated issue chat rendering in `ui/src/lib/issue-chat-messages.ts` to
prefer direct agent authorship, then activity-log `runAgentId`, then the
server-derived attribution.
- Removed the unsafe UI-only run-window fallback from
`ui/src/pages/IssueDetail.tsx` so human comments posted during an active
run are not silently relabeled as agent output.
- Added regression coverage for both the run-log derivation path and the
chat-rendering fallback behavior.
- Bounded server-side run-log enrichment to 8 concurrent reads per
request and removed the unused `issueCommentSchema` declaration during
PR cleanup.

## Verification

- `pnpm exec vitest run ui/src/lib/issue-chat-messages.test.ts
server/src/__tests__/issues-service.test.ts`
- `pnpm test:run:general`
- Live validation on May 12, 2026 in `PAPA-322`: confirmed the
previously misattributed historical comments on `PAPA-316` now render as
Claude-authored on `http://goldie.gerbil-company.ts.net:3100`.
- Reviewer check: open `PAPA-316` in the running instance and confirm
historical comments such as `## Investigation: exe.dev 422 + codex
re-test` render under Claude instead of the board user.

## Risks

- Low risk. The change is scoped to comment attribution recovery and
rendering.
- Derived attribution is intentionally conservative: if there is no
exact run-log proof, the comment remains user-authored instead of
guessing.
- Run-log recovery depends on retained same-issue logs, so older
comments without that evidence remain unchanged.

## Model Used

- OpenAI Codex via the Paperclip `codex_local` adapter (GPT-5-class
coding agent with tool use in the local Paperclip runtime; the exact
deployment/model ID is not surfaced by this workspace).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] If this change affects the UI, I have included before/after
screenshots
- [ ] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-12 01:20:49 -07:00
Devin Foley ad0bb57350 Fix exe.dev sandbox installs for gemini/opencode local adapters (#5737)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies, including
running adapter CLIs inside remote sandboxes
> - The QA matrix in PAPA-316 spins up local-runtime adapters
(claude/gemini/opencode) against both SSH and the new exe.dev sandbox
provider, and "Test" exercises the same install + probe path the real
runtime uses
> - On exe.dev the QA matrix failed at three different points:
SSH/sandbox secret refs would not resolve, gemini-local could not find
npm, and opencode-local installed a binary that was not on the
probe-shell PATH
> - These are all environment-shape issues the runtime should handle,
not regressions in any individual adapter, so they need to be fixed in
the shared install/resolve layer before the matrix can pass
> - This pull request wires the environment id through to secret-ref
resolution, bootstraps npm from a portable Node tarball when the sandbox
image lacks Node, and symlinks the opencode binary into a directory that
non-login shells see
> - The benefit is that the QA matrix passes end-to-end on exe.dev, and
any future sandbox provider that ships without Node or relies on rc-file
PATH wiring gets the same fixes for free

## What Changed

- `server/src/services/environment-execution-target.ts`: pass the
environment `id` into `resolveEnvironmentDriverConfigForRuntime` for
both the sandbox and SSH branches, so `privateKeySecretRef` /
sandbox-provider secret refs (e.g. exe.dev `apiKey`) can resolve against
the secret store at runtime instead of throwing `Runtime secret
resolution requires an environment id`.
- `packages/adapter-utils/src/sandbox-install-command.ts`: extend
`buildSandboxNpmInstallCommand` with an `ENSURE_NPM_PREAMBLE` that, when
`npm` is missing, downloads a portable Node v22 tarball into
`$HOME/.local` and sets `PAPERCLIP_NPM_BOOTSTRAPPED=1` so the install
step skips sudo (sudo's `secure_path` would lose the freshly-installed
`npm` in `$HOME/.local/bin`). Distro-packaged Node from apt-get is
intentionally avoided because it tends to be too old to parse modern JS
syntax used by `@google/gemini-cli`.
- `packages/adapters/gemini-local/src/index.ts`: switch the hardcoded
`npm install -g @google/gemini-cli` to `buildSandboxNpmInstallCommand`,
so gemini-local picks up the same sudo-aware + npm-bootstrap behavior as
the other local adapters.
- `packages/adapters/opencode-local/src/index.ts`: append a step to the
install command that symlinks `$HOME/.opencode/bin/opencode` into
`$HOME/.local/bin`. The upstream installer only adds `~/.opencode/bin`
to PATH via `~/.bashrc`, which non-login `sh -c` probe invocations do
not source.
- `packages/adapter-utils/src/sandbox-install-command.test.ts`: cover
the new preamble plus the unchanged root/sudo/user-prefix branches.

## Verification

- `cd packages/adapter-utils && npm test -- sandbox-install-command`
(passes; new "bootstraps npm from a portable Node tarball when missing"
case is included).
- Manual: ran the in-app `Test` action against the QA matrix dev
instance for `QA exe.dev Claude`, `QA exe.dev Gemini`, and `QA exe.dev
OpenCode` — all three now report `status=pass` including the hello
probe. `QA SSH Claude` also passes; without the environment-id fix, SSH
resolution threw before the wrapper / install fixes could run.
- Suggested reviewer check: re-run the matrix on a fresh exe.dev
environment and confirm the install step no longer hits `npm: command
not found` for gemini and the opencode probe no longer hits `opencode:
command not found`.

## Risks

- Low/medium. The npm bootstrap pins Node `v22.11.0` from
`nodejs.org/dist`; if that URL becomes unreachable the install will fail
with a clear `curl` error rather than corrupting state. The bootstrap
path is only taken when `npm` is genuinely missing, so existing sandbox
images that ship with Node are unaffected.
- The opencode symlink uses `ln -sf` into `$HOME/.local/bin`, which is
created with `mkdir -p`; idempotent on re-install.
- The `id` change is a strict additive: callers previously got
`undefined` and only the secret-ref code paths actually read it. No
behavior change for environments without secret refs.

## Model Used

- Claude (Anthropic), `claude-opus-4-7`, with extended thinking and tool
use enabled. Iterated through the Paperclip QA matrix harness; no other
model assisted.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] If this change affects the UI, I have included before/after
screenshots (n/a — runtime/install path only)
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-11 14:28:22 -07:00
Devin Foley 486fb88a15 Add Cloudflare sandbox provider plugin (#5687)
> _Stacked on top of #5685#5686. Diff against master includes commits
from earlier PRs in the stack — review focuses on the two new commits
(`Extend sandbox callback bridge for Worker-hosted plugins` + `Add
Cloudflare sandbox provider plugin`)._

## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies
> - Each agent runs in a sandbox environment, and operators choose which
provider backs that sandbox — today E2B and Daytona are bundled with the
platform
> - Cloudflare Workers + Durable Objects + the Sandbox SDK offer a
credible new option: globally distributed, cheap idle, and
operator-deployable as a single Worker
> - To plug it in, Paperclip needs (a) a provider plugin that speaks the
`PaperclipPluginManifestV1` lifecycle and (b) a small operator-deployed
Worker — the **bridge** — that adapts Paperclip's runtime RPCs to the
Cloudflare Sandbox SDK
> - The plugin extends the existing sandbox-callback-bridge with a
`bridge.transport: "worker"` discriminator so the platform routes
runtime RPCs through the Worker bridge instead of the in-process runner
> - This pull request adds the plugin, the bridge Worker template, and
the supporting adapter-utils + server hooks the new transport needs
> - The benefit is that operators can run sandboxes on Cloudflare's edge
with no new platform code beyond installing the plugin and deploying the
Worker

## What Changed

**Shared support (`Extend sandbox callback bridge for Worker-hosted
plugins`):**

- `packages/adapter-utils/src/sandbox-callback-bridge.{ts,test.ts}`:
expose `expectedHostHeader` so plugin-side bridge clients can verify the
canonical request envelope before forwarding.
- `packages/adapter-utils/src/command-managed-runtime.{ts,test.ts}`:
relax the always-fresh runner construction so callers can re-use a
runner across exec calls (Worker-hosted bridges hold the runner inside a
Durable Object).
- `server/src/services/environment-runtime.ts` +
`environment-runtime.test.ts`: route Worker-hosted bridges through the
same env-shaping path as E2B and pin the `requestEnv` contract.
- `server/src/services/plugin-environment-driver.ts`: thread an optional
`issueId` through the runtime descriptor so bridges can scope leases to
the originating issue (used by Cloudflare to map a sandbox to the
issue/workflow for billing and audit).
- `packages/plugins/sdk/src/protocol.ts`: add `issueId?` to
`PluginEnvironmentDriverBaseParams` and the new `bridge.transport:
"worker"` discriminator that the new plugin declares.
- `server/__tests__/heartbeat-plugin-environment.test.ts`: pin the
heartbeat path against the new runtime descriptor.

**The Cloudflare plugin itself (`Add Cloudflare sandbox provider
plugin`):**

- `packages/plugins/sandbox-providers/cloudflare/`: plugin entry,
manifest, plugin runtime (lifecycle + bridge client), config parsing,
and Vitest coverage. Manifest declares `bridge.transport: "worker"` so
the platform routes runtime RPCs through the bridge client.
- `bridge-template/`: a Worker template the operator deploys with
`wrangler`. Owns Durable Object-backed sessions (`sessions.ts`),
exec/stream routes (`exec.ts`, `routes.ts`), and an HMAC auth layer
(`auth.ts`) that pins the `Host` header surface. Includes the
SDK-contract-correct exec implementation, lease recovery, and chunked
stdout/stderr streaming.
- Tests cover lease/session handoff (`bridge-template/src/exec.test.ts`,
`routes.test.ts`), bridge client request shaping
(`src/bridge-client.test.ts`), and end-to-end plugin behavior
(`src/plugin.test.ts`) including streamed exec output. 27 tests in
total.
- `README.md` walks the operator through deploying the bridge Worker,
registering the plugin, and configuring the runtime.

## Verification

- `pnpm typecheck`
- `pnpm exec vitest run --no-coverage
packages/adapter-utils/src/sandbox-callback-bridge.test.ts
packages/adapter-utils/src/command-managed-runtime.test.ts
server/src/__tests__/environment-runtime.test.ts
server/src/__tests__/heartbeat-plugin-environment.test.ts`
- `(cd packages/plugins/sandbox-providers/cloudflare && pnpm test)` — 27
passing

For an operator-side smoke test:

1. Deploy the bridge: `cd
packages/plugins/sandbox-providers/cloudflare/bridge-template &&
wrangler deploy`
2. Register the plugin in your Paperclip instance, point its bridge URL
at the deployed Worker, set the HMAC shared secret.
3. Create a sandbox environment whose provider is `cloudflare`, then run
a Codex or Claude job against it.

## Risks

- Adds a new `bridge.transport: "worker"` code path, but the existing
E2B / Daytona transports go through the same shaped helpers and have
explicit test coverage that pins their behavior unchanged.
- The Worker bridge stores session state in a Durable Object; operator
instances must be aware of the corresponding Cloudflare costs (DO
requests, storage). Documented in the README.
- The `issueId` plumbing is optional throughout — existing plugins that
don't supply it continue to work.

## Model Used

- Provider: Anthropic
- Model: Claude Opus 4.7 (1M context)
- Capabilities used: extended reasoning, tool use (Read/Edit/Bash/Grep)

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] If this change affects the UI, I have included before/after
screenshots — N/A, no UI change
- [x] I have updated relevant documentation to reflect my changes
(plugin README, bridge-template README)
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-11 07:33:13 -07:00
Devin Foley b24c6909e8 Harden remote sandbox runtime probes, timeouts, and installs (#5685)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies
> - Each agent runs inside a sandbox environment so its CLI is isolated
from the host
> - Sandbox-backed adapter runs go through a small set of shared helpers
— `ensureAdapterExecutionTargetCommandResolvable`, the sandbox callback
bridge runner, and per-adapter `SANDBOX_INSTALL_COMMAND` strings
> - When standing up new sandbox provider plugins, the existing helpers
timed out, missed install fallbacks, or leaned on assumptions that only
held for E2B
> - Local adapters (`claude-local`, `codex-local`, `gemini-local`,
`opencode-local`) needed slightly hardened probes so they could install
themselves and validate inside *any* remote sandbox transport, not just
E2B
> - This pull request bundles those runtime fixes so future sandbox
provider plugins inherit a working baseline
> - The benefit is that adding a new sandbox provider plugin no longer
requires touching adapter-utils or each local-adapter probe — the
supporting infra is already correct

## What Changed

- `packages/adapter-utils/src/execution-target.ts`: introduce
`DEFAULT_REMOTE_SANDBOX_ADAPTER_TIMEOUT_SEC = 1800` and
`resolveAdapterExecutionTargetTimeoutSec(...)`. Local and SSH adapters
keep the historical "0 means no adapter timeout" behavior;
sandbox-backed runs without an explicit `timeoutSec` get an explicit
30-minute default so remote installs and warm-up don't time out at the
per-RPC default. Plumbed `timeoutSec` through
`ensureAdapterExecutionTargetCommandResolvable` so install probes inside
a sandbox honor adapter-level overrides instead of the bridge's 5-minute
default.
- `packages/adapters/opencode-local/src/index.ts`: switch
`SANDBOX_INSTALL_COMMAND` from `npm install -g opencode-ai` to `curl
-fsSL https://opencode.ai/install | bash`. The npm package reifies four
large prebuilt-binary subpackages in parallel even though only one
matches the host arch; on bandwidth-constrained sandboxes that blew
through the 240s install budget. The official installer fetches one
arch-specific binary and adds `$HOME/.opencode/bin` to PATH via
`~/.bashrc`, which the sandbox-callback-bridge login-shell script
already sources.
- `packages/adapters/{claude,codex,gemini,opencode}-local/`: harden
remote-target probes — pass `--skip-git-repo-check` for Codex when
probing outside a repo, normalize permission flags for Claude, and add
`*.remote.test.ts` coverage that exercises the remote-sandbox path
explicitly for each adapter.
- `packages/adapter-utils/src/sandbox-install-command.{ts,test.ts}`
(new): add `buildSandboxNpmInstallCommand` helper.
`server/src/adapters/registry.ts` + new
`server/src/__tests__/adapter-registry.test.ts`: wire adapter install
commands so they fall back to a writable `$HOME/.local` prefix when
global install isn't available.
- `server/src/__tests__/plugin-worker-manager.test.ts` + new
`server/src/__tests__/fixtures/plugin-worker-delayed.cjs`: pin per-call
timeout overrides so plugin worker exec calls honor the caller's timeout
instead of the worker's default.

## Verification

- `pnpm typecheck`
- `pnpm exec vitest run --no-coverage
packages/adapter-utils/src/execution-target-sandbox.test.ts
packages/adapter-utils/src/sandbox-install-command.test.ts`
- `pnpm exec vitest run --no-coverage
server/src/__tests__/plugin-worker-manager.test.ts
server/src/__tests__/adapter-registry.test.ts
server/src/__tests__/claude-local-adapter-environment.test.ts
server/src/__tests__/claude-local-execute.test.ts
server/src/__tests__/gemini-local-adapter-environment.test.ts`
- `pnpm exec vitest run --no-coverage
packages/adapters/codex-local/src/server/test.remote.test.ts
packages/adapters/opencode-local/src/server/test.remote.test.ts
packages/adapters/codex-local/src/server/codex-args.test.ts
packages/adapters/codex-local/src/server/execute.remote.test.ts
packages/adapters/gemini-local/src/server/execute.remote.test.ts`

All passing locally.

## Risks

- Touches shared `adapter-utils` and several `*-local` adapters. The
30-minute default applies only when both (a) the target is
`remote+sandbox` and (b) no `timeoutSec` is configured — local + SSH
paths are unchanged. New test coverage was added alongside each behavior
change to pin the contracts.
- Switching OpenCode's install command to the official installer is a
behavior change for any operator running OpenCode inside a remote
sandbox. Local installs are unaffected (the `SANDBOX_INSTALL_COMMAND`
only runs when an adapter is being installed inside a sandbox).
- Low risk overall — no migrations, no API surface change.

## Model Used

- Provider: Anthropic
- Model: Claude Opus 4.7 (1M context)
- Capabilities used: extended reasoning, tool use (Read/Edit/Bash/Grep),
no code execution beyond local repo commands

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] If this change affects the UI, I have included before/after
screenshots — N/A, no UI change
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-11 00:31:54 -07:00
Devin Foley 534aee66ae Add cursor_cloud adapter for Cursor SDK + Cloud Agents API v1 (#5664)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies
> - There are many adapter types, one per agent-runtime product (Claude,
Codex, OpenCode, Cursor local CLI, etc.)
> - Cursor shipped a public TypeScript SDK on 2026-04-29 that exposes
Cursor's full hosted-agent platform (cloud VMs, harness, MCP, skills,
hooks)
> - Paperclip had no first-class adapter for this — agents that wanted
to use Cursor's managed cloud runtime had to fall back to the local CLI
adapter, which loses the cloud session, streaming, and durable run model
> - This PR adds a new `cursor_cloud` adapter built directly on
`@cursor/sdk`, with Paperclip's heartbeat mapped to Cursor's
durable-agent + per-run model
> - The benefit is that any Paperclip agent can now drive a Cursor cloud
agent across heartbeats with native session reuse, streaming, and
cancellation, while Paperclip remains the source of truth for issue/task
state

## What Changed

- New built-in adapter package `packages/adapters/cursor-cloud` (15
files, ~1.7k LOC) backed by `@cursor/sdk` ^1.0.12
- `src/server/execute.ts` — SDK-first lifecycle: `Agent.create` /
`Agent.resume` / `Agent.getRun` / `agent.send` / `run.stream` /
`run.wait`, with session reuse keyed on the (runtime env type, env name,
repo set) tuple
- `src/server/session.ts` — codec for `cursorAgentId` + `latestRunId` +
repo metadata, persisted in `runtime.sessionParams`
- `src/server/test.ts` — environment probe via `Cursor.me()` and
optional model validation via `Cursor.models.list()`
- `src/ui/parse-stdout.ts` + `src/cli/format-event.ts` — normalize
Cursor SDK message types (`status`, `thinking`, `assistant`, `user`,
`tool_call`, `tool_result`, `result`) into Paperclip transcript events
for the UI and CLI
- Registrations: `packages/shared/src/constants.ts`,
`packages/adapter-utils/src/session-compaction.ts`,
`server/src/adapters/{registry,builtin-adapter-types}.ts`,
`ui/src/adapters/{registry,adapter-display-registry}.ts` +
`ui/src/adapters/cursor-cloud/index.ts`, `cli/src/adapters/registry.ts`,
plus workspace deps in `cli`/`server`/`ui` `package.json`
- `ui/src/components/AgentConfigForm.tsx` — hide local-Cursor
`mode`/thinking-effort field for `cursor_cloud` (different config
surface)
- 11 vitest tests covering execute paths (fresh create, matching-resume,
active-run reattach, non-finished result), session codec round-trip,
transcript parsing, and config building

## Verification

Reviewer steps:

```bash
pnpm install
pnpm --filter @paperclipai/adapter-cursor-cloud typecheck   # → clean
pnpm vitest run packages/adapters/cursor-cloud              # → 11/11 passing
```

End-to-end check against a real Cursor cloud agent (requires
`CURSOR_API_KEY` and Cursor GitHub-app install on the target repo):

1. Create a `cursor_cloud` agent in Paperclip with `repoUrl` set to the
test repo, `repoStartingRef: main`, and `env.CURSOR_API_KEY` set
2. Trigger a heartbeat → adapter calls `Agent.create({ cloud: { env: {
type: "cloud" }, repos: [...] } })`, streams events, terminates on
`finished`
3. Trigger a second heartbeat → adapter calls `Agent.resume` or
`agent.send` follow-up depending on prior-run state, reusing
`cursorAgentId`
4. The Paperclip UI/CLI transcript reflects Cursor `status` / `thinking`
/ `assistant` events as they stream
5. Cancellation from Paperclip maps to `run.cancel()` or Cloud API v1
`cancelRun` for cross-heartbeat cancellation

A direct-SDK smoke run against a real repo (devinfoley/my_test_project @
main) confirmed: `Cursor.me()` ok → `Agent.create` → `agent.send` →
`run.stream()` (30 events) → terminal status `finished` in ~11s.

## Risks

- **New adapter, additive only.** No existing adapter or registry is
replaced; current `cursor` local-CLI adapter is untouched. Default
behavior of any existing agent is unchanged.
- **External dependency on `@cursor/sdk`.** Cursor's SDK is v1.0.x and
may evolve. Mocked unit tests cover the public surface used here; if the
SDK breaks compatibility we update the adapter independently.
- **Cost/budget.** `cursor_cloud` runs on Cursor's billed cloud VMs;
operators must understand they are spending money outside Paperclip's
budget controls when they enable this adapter. Same shape as other
API-billed adapters.
- **No webhook support in V1.** The SDK already provides
stream/wait/cancel/reattach, so V1 does not require a public callback
URL. If a future use case needs out-of-band wakes, we add a Cloud API v1
webhook bridge as a separate change. This is called out in the issue
plan document.
- **Lockfile.** Per repo policy, `pnpm-lock.yaml` is intentionally not
in this PR — CI's lockfile workflow will update it on merge given the
manifest changes.

## Model Used

- Provider: Anthropic Claude (via Claude Code / Paperclip `claude_local`
adapter)
- Model: `claude-opus-4-7` (Claude Opus 4.7), knowledge cutoff January
2026
- Mode: standard tool-use with extended reasoning
- Context: ~200k token window
- Capabilities used: code generation, multi-file edits, shell/test
execution, GitHub PR workflow

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass (11/11 in
`packages/adapters/cursor-cloud`)
- [x] I have added or updated tests where applicable (4 new test files,
11 cases)
- [ ] If this change affects the UI, I have included before/after
screenshots (the only UI change is hiding the local-Cursor mode field on
the `cursor_cloud` adapter — happy to attach a screenshot if the
reviewer wants one)
- [x] I have updated relevant documentation to reflect my changes (issue
plan document supersedes the pre-SDK design; tracked in PAPA-203)
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-10 17:21:04 -07:00
Dotta 0096b56a1c [codex] Add LLM Wiki plugin host support (#5597)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies.
> - The plugin system needs host contracts and runtime support before
large plugins can integrate cleanly.
> - The source branch mixed the LLM Wiki package with supporting
host/runtime work, managed plugin skills, root-level storage spaces, and
a bookmarks reference plugin.
> - [PAP-9173](/PAP/issues/PAP-9173) asked for the current branch to be
split by file boundary: plugin package separately from everything else.
> - [PAP-9188](/PAP/issues/PAP-9188) clarified that LLM Wiki may have
plugin-local spaces, but Paperclip core should not reorganize top-level
local storage into spaces.
> - Follow-up review clarified that the bookmarks example should not
ship in this PR either.
> - This pull request contains the
non-`packages/plugins/plugin-llm-wiki/` host/runtime work, keeps runtime
state under the selected Paperclip instance root, and no longer includes
the bookmarks example.

## What Changed

- Added/updated plugin host contracts, SDK types, worker RPC plumbing,
managed plugin skill support, and related server tests.
- Removed the bookmarks example plugin package and its
bundled-example/workspace references.
- Removed the root-level local spaces CLI/migration surface and restored
instance-root runtime defaults for config, db, logs, storage, secrets,
workspaces, projects, and adapter homes.
- Replaced shared root `space-paths` helpers with `home-paths` helpers
for core runtime storage.
- Tightened stranded recovery unique-conflict detection so concurrent
recovery scans reuse the raced recovery issue when Postgres errors are
wrapped.
- Kept `packages/plugins/plugin-llm-wiki/` out of this PR diff;
plugin-local spaces remain in the stacked plugin-only PR.

## Verification

- `pnpm exec vitest run cli/src/__tests__/data-dir.test.ts
cli/src/__tests__/home-paths.test.ts cli/src/__tests__/onboard.test.ts
packages/shared/src/home-paths.test.ts
packages/db/src/runtime-config.test.ts
server/src/__tests__/agent-instructions-service.test.ts
server/src/__tests__/claude-local-execute.test.ts
server/src/__tests__/codex-local-execute.test.ts`
- `pnpm exec vitest run packages/db/src/runtime-config.test.ts`
- `pnpm exec vitest run
server/src/__tests__/plugin-routes-authz.test.ts`
- `pnpm --filter @paperclipai/server typecheck`
- `pnpm exec vitest run
server/src/__tests__/heartbeat-process-recovery.test.ts -t "reuses the
raced stranded recovery issue"` skipped locally because embedded
Postgres did not initialize on this macOS temp host; the code path was
typechecked and is covered by Linux CI.
- Boundary check: no core references remain for `PAPERCLIP_SPACE_ID`,
`spaces migrate-default`, `@paperclipai/shared/space-paths`,
`registerSpacesCommands`, or the removed bookmarks example.
- Previous PR head `4f23e034` had green GitHub checks: `verify`, all
four serialized server shards, `e2e`, `Canary Dry Run`, `policy`, Snyk,
and `Greptile Review`. Current head `582f466d` is re-running checks
after the bookmarks deletion.

## Risks

- Plugin host changes touch shared runtime paths, so regressions would
most likely appear in adapter startup, plugin loading, or local dev path
defaults.
- Removing the bookmarks example also removes one demonstration of
plugin database namespaces plus local-folder persistence; remaining
plugin examples still cover bundled example discovery and plugin host
flows.
- The plugin package itself is intentionally deferred to the stacked
plugin-only PR, where LLM Wiki plugin-local spaces live.
- Existing installs that tested the transient root-level spaces CLI
should stop using it; this PR intentionally removes that unsupported
migration surface before merge.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI GPT-5 Codex via Codex CLI, tool use and local code execution
enabled; context window not exposed.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass, except where noted above
for host-specific embedded Postgres initialization
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

Stacked follow-up: PR #5592 contains only
`packages/plugins/plugin-llm-wiki/` and targets this branch.

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-10 07:34:12 -05:00
Devin Foley a72731f118 fix: harden release registry verification against npm lag (#4816)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies
> - Its release automation publishes canary packages to npm and then
validates the published registry state before considering the release
healthy
> - The failing canary run `25139465018` showed that npm can expose a
newly published version through version-specific endpoints before the
root package document has fully converged
> - That made a successful canary publish look like a failed release
because the verifier trusted stale root metadata too early
> - This pull request hardens the registry verification path by
preferring version-specific manifest checks, retrying
convergence-sensitive failures, and distinguishing permanent failures
from propagation lag
> - While validating that change in CI, a separate teardown race in
`heartbeat-stale-queue-invalidation.test.ts` surfaced and was hardened
so the PR could pass reliably
> - The benefit is that transient npm propagation lag no longer fails a
successful canary publish, while genuine registry-state and
dependency-integrity failures still stop the release flow promptly

## What Changed

- Hardened `scripts/verify-release-registry-state.mjs` so it prefers
version-specific manifest resolution over stale root metadata, adds
bounded registry-fetch timeouts, and classifies failures as retriable vs
non-retriable.
- Updated `scripts/release-lib.sh` and `scripts/release.sh` so
post-publish registry verification retries only convergence-sensitive
failures and reports immediate permanent failures clearly.
- Expanded `scripts/verify-release-registry-state.test.mjs` with
regression coverage for stale root metadata, fetch timeout behavior,
peer dependency range handling, non-retriable canary-latest cases, and
related verifier edge cases.
- Hardened
`server/src/__tests__/heartbeat-stale-queue-invalidation.test.ts`
teardown to tolerate the late-comment foreign-key race that CI exposed
while validating this branch.

## Verification

- `pnpm run test:release-registry`
- `node --check scripts/verify-release-registry-state.mjs`
- `bash -n scripts/release.sh && bash -n scripts/release-lib.sh`
- PR checks passed on head `5c422600fc12acac61f6b7c267a4dc915df622b1`:
`policy`, `verify`, `e2e`, `security/snyk`, and `Greptile Review`

## Risks

- Low risk. The main behavioral changes are limited to release
automation and verifier retry semantics, plus a test-only teardown
hardening for a CI race.

> I checked [`ROADMAP.md`](ROADMAP.md). This is a narrow release bugfix
and does not overlap planned core feature work.

## Model Used

- OpenAI Codex via Paperclip `codex_local` with tool use and local code
execution enabled. This agent session runs on a GPT-5-class coding
model; the exact backend model ID/context window is not exposed by the
local adapter runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] If this change affects the UI, I have included before/after
screenshots
- [ ] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I have addressed all Greptile and reviewer comments before
requesting merge
2026-05-09 22:18:12 -07:00
Devin Foley 2f72cb29ea chore: update drizzle-orm to 0.45.2 (#5589)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies.
> - The server, DB package, and CLI all rely on the shared Drizzle ORM
dependency for core persistence flows.
> - A published install was still resolving nested `drizzle-orm@0.38.4`,
which left the production package graph behind the intended security
update.
> - The repo’s documented dependency policy says GitHub Actions owns
`pnpm-lock.yaml`, so the correct maintainer workflow is to update
dependency manifests in the feature PR and let the lockfile refresh
happen separately after merge.
> - This pull request therefore keeps the Drizzle upgrade to the package
manifests only and leaves lockfile regeneration to the existing `Refresh
Lockfile` automation.

## What Changed

- Updated `drizzle-orm` dependency declarations in `cli/package.json`,
`packages/db/package.json`, and `server/package.json` from `0.38.4` /
`^0.38.4` to `0.45.2` / `^0.45.2`.
- Re-verified the packed `@paperclipai/db` and `@paperclipai/server`
publish payloads to confirm their generated `package.json` files
advertise `drizzle-orm ^0.45.2`.
- Removed the temporary lockfile/CI follow-up commits so the branch now
matches the intended manifest-only protocol.

## Verification

- `pnpm list drizzle-orm -r --depth 0`
- `pnpm exec vitest run packages/db/src/client.test.ts
server/src/__tests__/issues-service.test.ts`
- `pnpm run test:release-registry`
- Packed `@paperclipai/db` and `@paperclipai/server` locally and
inspected the tarball `package.json` files to confirm they advertise
`drizzle-orm ^0.45.2`.

## Risks

- Low to moderate risk: the runtime code paths are unchanged, but
downstream lockfile refresh now depends on the existing post-merge
GitHub automation working as documented.
- A separate packaging/versioning issue around unpublished
`@paperclipai/plugin-sdk@1.0.0` showed up during a raw local tarball
install experiment; that is called out for reviewers but is not part of
this Drizzle bump.

## Model Used

- OpenAI Codex via the `codex_local` adapter, using a GPT-5-based coding
agent with terminal tool use and code execution. The adapter does not
expose a public exact model ID or context-window value in this
environment.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-05-09 21:31:57 -07:00
Dotta 778e775c35 Add secrets provider vaults and remote import (#5429)
## Thinking Path

> - Paperclip orchestrates AI-agent companies and needs secrets handling
to work across local development, hosted operators, and governed agent
execution.
> - The affected subsystem is the company-scoped secrets control plane:
database schema, server services/routes, CLI workflows, and the Secrets
settings UI.
> - The gap was that secrets were local-only and operators could not
manage provider vaults or import existing remote references without
exposing plaintext.
> - This branch adds provider vault configuration plus an AWS Secrets
Manager remote-import path while preserving company boundaries, binding
context, and audit trails.
> - I kept the PR to a single branch PR, removed unrelated
lockfile/package drift, rebased the full branch onto the current
`public-gh/master`, and addressed fresh Greptile findings.
> - The benefit is a reviewable implementation of provider-backed
secrets with focused tests covering provider selection, import
conflicts, deleted secret reuse, rotation guards, and AWS signing
behavior.

## What Changed

- Added provider vault support for company secrets, including provider
config storage, default vault handling, health checks, binding usage,
access events, and remote import preview/commit.
- Added an AWS Secrets Manager provider using SigV4 request signing,
bounded request timeouts, namespace guardrails, cached runtime
credential resolution, and external-reference linking without plaintext
reads.
- Added Secrets UI surfaces for vault management and remote import, plus
CLI/API documentation for setup and operations.
- Stabilized routine webhook secret binding paths and SSH
environment-driver fixture bindings discovered during verification.
- Addressed Greptile and CI findings: no lockfile/package drift,
monotonic migration metadata, disabled-vault default races, soft-deleted
secret hiding/recreate behavior, remove behavior with disabled vaults,
soft-deleted external-reference re-import, non-active rotation guards,
managed-secret soft deletion through PATCH, and per-call AWS SDK
credential client churn.
- Rebased this branch onto `public-gh/master` at `0e1a5828` and
force-pushed with lease to keep this as the single PR for the branch.

## Verification

- `git fetch public-gh master`
- `git rebase public-gh/master`
- `git diff --name-only public-gh/master...HEAD | grep
'^pnpm-lock\.yaml$' || true` confirmed `pnpm-lock.yaml` is not in the PR
diff.
- Confirmed migration ordering: master ends at `0081_optimal_dormammu`;
this PR adds `0082_dry_vision` and
`0083_company_secret_provider_configs`.
- Inspected migrations for repeat safety: new tables/indexes use `IF NOT
EXISTS`; foreign keys are guarded by `DO $$ ... IF NOT EXISTS`; column
additions use `ADD COLUMN IF NOT EXISTS`.
- `pnpm -r typecheck` passed before the Greptile follow-up commits.
- `pnpm test:run` ran the full stable Vitest path before the Greptile
follow-up commits; it completed with 3 timing-related failures under
parallel load: `codex-local-execute.test.ts`,
`cursor-local-execute.test.ts`, and `environment-service.test.ts`.
- `pnpm --filter @paperclipai/server exec vitest run
src/__tests__/codex-local-execute.test.ts
src/__tests__/cursor-local-execute.test.ts
src/__tests__/environment-service.test.ts` passed on targeted rerun
(`24/24`).
- `pnpm build` passed before the Greptile follow-up commits. Vite
reported existing chunk-size/dynamic-import warnings.
- After Greptile follow-up commits: `pnpm --filter @paperclipai/server
exec vitest run src/__tests__/secrets-service.test.ts` passed (`26/26`).
- After Greptile follow-up commits: `pnpm --filter @paperclipai/server
exec vitest run src/__tests__/aws-secrets-manager-provider.test.ts
src/__tests__/secrets-service.test.ts` passed (`39/39`).
- After Greptile follow-up commits: `pnpm --filter @paperclipai/server
typecheck` passed.
- Captured Storybook screenshots from `ui/storybook-static` for visual
review.
- Latest PR checks on `5ca3a5cf`: `policy`, serialized server suites
1/4-4/4, `Canary Dry Run`, `e2e`, `security/snyk`, and `Greptile Review`
pass; aggregate `verify` is still registering the completed child
checks.
- Greptile review loop continued through the latest requested pass; all
Greptile review threads are resolved and the latest `Greptile Review`
check on `5ca3a5cf` passed with 0 comments added.

## Screenshots

Before: the provider-vault and remote-import surfaces did not exist on
`master`; these are after-state screenshots from the Storybook fixtures.

![Secrets
inventory](https://raw.githubusercontent.com/paperclipai/paperclip/PAP-2339-secrets-make-a-plan/doc/pr/5429/secrets-inventory.png)

![Secret binding
picker](https://raw.githubusercontent.com/paperclipai/paperclip/PAP-2339-secrets-make-a-plan/doc/pr/5429/secret-binding-picker.png)

![Environment editor with
secrets](https://raw.githubusercontent.com/paperclipai/paperclip/PAP-2339-secrets-make-a-plan/doc/pr/5429/env-editor-with-secrets.png)

## Risks

- Migration risk: this adds new secret provider tables and extends
existing secret rows. The migrations were checked for monotonic ordering
and idempotent guards, but reviewers should still inspect upgrade
behavior carefully.
- Provider risk: AWS support uses direct SigV4 requests. Automated tests
cover signing, request timeouts, vault-config selection, namespace
guardrails, pending-version archival, sanitized provider errors, and
service-level cleanup paths. A real-vault AWS smoke test remains
deployment validation for an operator with AWS credentials rather than
an unverified merge blocker in this local branch.
- UI risk: the Secrets page and import dialog are large new surfaces;
screenshots are included above for reviewer inspection.
- Verification risk: the full local stable test command hit
parallel-load timing failures, although the exact failed files passed
when rerun directly.
- Operational risk: remote import intentionally avoids plaintext reads;
operators must understand that imported external references resolve at
runtime and may fail if AWS permissions change.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5 coding agent with local shell/tool use in the
Paperclip worktree. Exact context-window size was not exposed by the
runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [ ] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-09 18:22:17 -05:00
Devin Foley 0e1a582831 Revert "Add experimental newest-first issue thread" (#5460)
This is actually bad. Glad it was under experiments.
2026-05-07 16:50:31 -07:00
Devin Foley a904effb96 Add experimental newest-first issue thread (#5455)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies, so issue
threads are a core operator surface for reviewing work.
> - The issue detail page is the place where humans read agent messages,
user comments, and execution context together.
> - That thread originally rendered oldest-first, which made recent
activity harder to see during active review.
> - Reversing the thread order changes navigation expectations,
timestamp placement, and the "Jump to latest" affordance, so the UI
behavior needed to move as a coherent set.
> - Because this is a visible core-product behavior shift, it also
needed a safe rollout path instead of becoming the default immediately.
> - This pull request adds the newest-first issue thread behavior behind
an Experimental setting, updates the thread UI to match that mode, and
keeps the legacy oldest-first experience unchanged by default.
> - The benefit is that reviewers can opt into a more recent-first issue
workflow without forcing a global behavior change on every Paperclip
instance.

## What Changed

- Reversed issue thread rendering so the newest comments and messages
appear first when the experiment is enabled.
- Moved the plain comment timestamp into the card header in newest-first
mode and kept the legacy timestamp placement for oldest-first mode.
- Moved the `Jump to latest` control to the bottom of the thread in
newest-first mode while leaving the existing top placement for the
legacy mode.
- Added the `Enable Newest-First Issue Thread` experimental instance
setting and wired issue detail to read that toggle.
- Added regression coverage for thread order, timestamp placement,
jump-button placement, and the issue-detail experiment toggle behavior.

## Verification

- `pnpm -r typecheck`
- `pnpm test:run`
- `pnpm build`
- Focused checks that also passed during issue review:
- `pnpm vitest run src/components/IssueChatThread.test.tsx
src/pages/IssueDetail.test.tsx` in `ui/`
- `pnpm vitest run src/__tests__/instance-settings-routes.test.ts` in
`server/`
- Manual review path:
- Enable `Instance Settings > Experimental > Enable Newest-First Issue
Thread`
- Open an issue with comments/messages and confirm newest activity
renders first, timestamps move into the header, and `Jump to latest`
sits below the thread
- Disable the experiment and confirm the legacy oldest-first behavior
returns

## Risks

- Low risk: the behavioral change is gated behind an instance-level
experimental toggle and defaults off.
- The main regression risk is thread navigation drift between the two
modes, especially around anchor scrolling and the `Jump to latest`
affordance.
- There is some UI coupling between issue-detail query state and
experimental settings fetches, so future changes in that area should
keep both modes covered.
- Screenshots are not attached in this PR body; verification is
described with automated coverage and manual steps instead.

> I checked [`ROADMAP.md`](ROADMAP.md). This is a scoped issue-thread UX
improvement and rollout gate, not a duplicate of a roadmap-level planned
core feature.

## Model Used

- OpenAI Codex via the local `codex_local` Paperclip adapter,
GPT-5-based coding agent with terminal tool use and local code execution
in this repository worktree.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] If this change affects the UI, I have included before/after
screenshots
- [ ] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-05-07 16:45:12 -07:00
Devin Foley fe3904f434 Stabilize runtime probes and Codex env tests (#5445)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies
> - Adapters expose a Test action that probes the configured runtime —
install, resolvability, hello — to give operators a fast yes/no on
whether an environment is healthy
> - The Codex test path was running its hello probe directly without
going through the managed-runtime preparation that production runs use,
so a healthy production setup could still report a probe failure
> - The plugin worker manager wasn't surfacing terminated workers
cleanly, leaving the runtime probe waiting on a dead worker until the
request timed out
> - This pull request routes the Codex test probe through
`prepareAdapterExecutionTargetRuntime` (so it sees the same managed
Codex home production sees), exposes `commandCwd` on
`createCommandManagedRuntimeClient` so callers can target a per-probe
directory without leaking the workspace `remoteCwd`, and propagates
plugin-worker termination as a usable error instead of a hang
> - The benefit is the Codex Test action mirrors production behavior
end-to-end, and probes against a terminated plugin worker fail fast
instead of timing out

## What Changed

- `packages/adapter-utils/src/command-managed-runtime.ts`: rename the
`remoteCwd` knob to `commandCwd` so callers can target a per-probe
directory without inheriting the workspace cwd; matching test coverage
in `command-managed-runtime.test.ts`
- `packages/adapter-utils/src/sandbox-callback-bridge.{ts,test.ts}`:
small fixes to keep callback bridge stop semantics deterministic
- `packages/adapters/codex-local/src/server/test.ts`: thread the Codex
hello probe through `prepareAdapterExecutionTargetRuntime` +
`prepareManagedCodexHome` so the probe sees the same managed home
production sees; new `test.remote.test.ts` covers the remote probe path
- `packages/adapters/cursor-local/src/server/execute.ts`: small
probe-side cleanup that aligns with the new commandCwd contract
- `server/src/services/plugin-worker-manager.ts`: surface plugin-worker
termination as a structured error so callers fail fast; new
`plugin-worker-terminated.cjs` fixture and
`plugin-worker-manager.test.ts` cases pin the behavior

## Verification

- `pnpm vitest run --no-coverage --project @paperclipai/adapter-utils
--project @paperclipai/adapter-codex-local --project
@paperclipai/adapter-cursor-local --project @paperclipai/server` —
1749/1750 passing (1 unrelated skip)
- `pnpm typecheck` clean

## Risks

Low–medium. The `remoteCwd → commandCwd` rename is a parameter renaming
on an internal helper used only by adapter test/execute paths in this
repo. The plugin-worker-terminated path was previously a hang; failing
fast may surface latent timeouts as explicit termination errors in
callers that already expected them.

## Model Used

Claude Opus 4.7 (1M context)

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable — new tests cover
commandCwd, plugin-worker termination, and Codex remote test path
- [x] If this change affects the UI, I have included before/after
screenshots — N/A (no UI)
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---

> **Stacked PR.** Sits on top of #5444 which adds the per-run runtime
API surface this PR builds on. Cumulative diff against `master` includes
that PR's content; the files touched by *this* PR's commit are listed
under "What Changed" above. Will rebase onto `master` and force-push
once #5444 merges.
2026-05-07 14:52:31 -07:00
Dotta e400315cbf Guard assigned backlog liveness (#5428)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies
> - The issue graph and liveness recovery system decide whether assigned
work is executable or parked
> - Assigned issues created without an explicit status could silently
land in backlog, making parents look blocked with no productive wake
path
> - The server, shared validators, recovery analysis, and UI all need to
agree on that execution semantic
> - This pull request makes assigned issue creation default to `todo`,
flags assigned backlog blockers, and surfaces the state in the board
> - The benefit is that parked assigned work becomes intentional and
visible instead of creating silent liveness stalls

## What Changed

- Adds contract tests for assigned issue creation defaults.
- Defaults assigned issue creation to `todo` when status is omitted
while preserving explicit `backlog` parking.
- Exposes `resolveCreateIssueStatusDefault` through shared validators.
- Teaches liveness/blocker attention paths to distinguish assigned
backlog blockers.
- Adds UI notices, row/header badges, and issue detail safeguards for
assigned backlog blockers.
- Adds Storybook fixtures and execution-semantics documentation for the
assigned-backlog behavior.

## Verification

- `pnpm run preflight:workspace-links && pnpm exec vitest run
packages/shared/src/validators/issue.test.ts
server/src/__tests__/issue-assigned-backlog-contract-routes.test.ts
server/src/__tests__/issue-blocker-attention.test.ts
server/src/__tests__/issue-liveness.test.ts
server/src/__tests__/heartbeat-issue-liveness-escalation.test.ts
ui/src/components/IssueAssignedBacklogNotice.test.tsx
ui/src/components/IssueRow.test.tsx` — 50 passed, 23 skipped.
- Skipped tests were embedded Postgres suites on this host with the repo
skip message: `Postgres init script exited with code null. Please check
the logs for extra info. The data directory might already exist.`
- Pairwise merge check against the issue-controls PR branch completed
without conflicts via `git merge --no-commit --no-ff` in a temporary
worktree.
- Screenshots for assigned-backlog UI states:
[light](docs/pr-screenshots/pr-5428/assigned-backlog-light.png),
[dark](docs/pr-screenshots/pr-5428/assigned-backlog-dark.png).
- Follow-up checks: `pnpm --filter /ui typecheck`; `pnpm --filter
/mcp-server build`; `pnpm --filter /mcp-server test`; `pnpm exec vitest
run packages/shared/src/validators/issue.test.ts`; focused UI component
tests.
- Remote PR checks on head `6300b3c`: policy, verify, serialized server
shards 1/4-4/4, Canary Dry Run, e2e, Greptile Review, and Snyk all
passed.

## Risks

- Medium: changes status defaulting for assigned issue creation when the
caller omits status. Explicit `backlog` remains supported, and
server/shared tests cover both paths.
- Medium: liveness classification changes can affect blocker attention
labels; focused service and UI tests cover the new assigned-backlog
state.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex coding agent, GPT-5 model family (`gpt-5`), tool-enabled
Paperclip heartbeat environment. Context window and internal reasoning
mode are not exposed by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-07 12:25:26 -05:00
Dotta 772fc92619 Add issue controls and retry-now recovery (#5426)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies
> - Issue operators need clear controls for execution settings, model
overrides, and recovery retries
> - Existing issue properties hid useful adapter override state and did
not expose a board-triggered retry for scheduled heartbeat recovery
> - Scheduled retries also need to respect the same safety gates as
normal execution instead of bypassing budget, review, pause, dependency,
or terminal-state checks
> - This pull request adds the issue property controls and retry-now
surfaces together because they share the issue details/properties UI
> - The benefit is that operators can inspect and adjust issue execution
settings and safely trigger pending scheduled recovery without hidden
control-plane behavior

## What Changed

- Adds editable issue assignee model override controls in
`IssueProperties`, with focused coverage.
- Removes the stale workspace tasks link from issue properties.
- Adds a scheduled retry `retry-now` backend path and shared response
types.
- Adds main-pane and properties-pane scheduled retry UI, backed by a
shared `useRetryNowMutation` hook.
- Adds suppression coverage for budget hard stops, review participant
changes, subtree pause holds, unresolved blockers, terminal issues, and
company scoping.
- Updates the `IssueProperties` test harness with toast actions required
by the retry-now hook.

## Verification

- `pnpm exec vitest run ui/src/components/IssueProperties.test.tsx
ui/src/components/IssueScheduledRetryCard.test.tsx` — 31 passed.
- `pnpm exec vitest run
server/src/__tests__/issue-scheduled-retry-routes.test.ts` — exited 0,
but this host skipped the embedded Postgres route tests with: `Postgres
init script exited with code null. Please check the logs for extra info.
The data directory might already exist.`
- Pairwise merge check against the assigned-backlog PR branch completed
without conflicts via `git merge --no-commit --no-ff` in a temporary
worktree.

### Visual verification screenshots

Storybook story: `Product/Issue Scheduled retry surfaces /
ScheduledRetrySurfaces`.

![Scheduled retry card and issue properties rows -
desktop](https://raw.githubusercontent.com/paperclipai/paperclip/62fb566f357312b43b9162af02252d0175530a8f/docs/assets/pr-5426/scheduled-retry-story-desktop.png)

![Scheduled retry card and issue properties rows -
mobile](https://raw.githubusercontent.com/paperclipai/paperclip/62fb566f357312b43b9162af02252d0175530a8f/docs/assets/pr-5426/scheduled-retry-story-mobile.png)

## Risks

- Medium: this touches issue execution/retry behavior, so CI should run
the embedded Postgres route tests on a host that can initialize
Postgres.
- Low-to-medium UI risk around duplicated retry-now entry points; both
surfaces share one mutation hook to keep behavior consistent.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex coding agent, GPT-5 model family (`gpt-5`), tool-enabled
Paperclip heartbeat environment. Context window and internal reasoning
mode are not exposed by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-07 12:23:13 -05:00
Dotta d0e9cc76f2 Show workspace changes and stale notices in issue threads (#5356)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies
> - The issue thread is the operator's durable audit trail for what
changed and why
> - Workspace changes and stale disposition notices need to be visible
in that same timeline without noisy or misleading rendering
> - The local branch already contained backend activity details,
timeline conversion, and UI rendering work for those events
> - This pull request isolates the issue-thread activity work into a
standalone branch against `origin/master`
> - The benefit is a focused audit-trail PR that can merge independently
of the sidebar/operator UI polish branch

## What Changed

- Adds readable workspace-change activity details to issue update
activity events.
- Surfaces workspace-change events in issue chat/timeline rendering.
- Makes the existing issue comment migration idempotent.
- Folds and renders stale disposition notices inline so they match
activity-log styling and spacing.
- Adds focused route, timeline, and issue-thread system notice coverage.

## Verification

- `pnpm install --frozen-lockfile`
- `pnpm exec vitest run
server/src/__tests__/issue-activity-events-routes.test.ts
ui/src/lib/issue-timeline-events.test.ts
ui/src/components/IssueChatThreadSystemNotice.test.tsx` — 3 files
passed, 22 tests passed.
- Confirmed the PR changes 9 files and does not include `pnpm-lock.yaml`
or `.github/workflows/*`.
- `pnpm exec vitest run
server/src/__tests__/issue-closed-workspace-routes.test.ts` — 1 file
passed, 4 tests passed.
- `pnpm exec vitest run
server/src/__tests__/issue-activity-events-routes.test.ts
ui/src/lib/issue-timeline-events.test.ts
ui/src/components/IssueChatThreadSystemNotice.test.tsx
server/src/services/recovery/successful-run-handoff.test.ts
packages/shared/src/validators/issue.test.ts` — 5 files passed, 54 tests
passed.
- `pnpm --filter @paperclipai/shared typecheck && pnpm --filter
@paperclipai/server typecheck && pnpm --filter @paperclipai/ui
typecheck`.
- `pnpm --filter @paperclipai/ui typecheck` after adding the Storybook
screenshot fixture.
- Captured Storybook screenshots for the new UI rendering paths:
- Collapsed stale notice + workspace-change row:
`docs/pr-screenshots/pr-5356/issue-thread-notices-collapsed.png`
- Expanded stale notice details:
`docs/pr-screenshots/pr-5356/issue-thread-notices-expanded.png`


### Screenshots

Collapsed stale notice with workspace-change row:

![Collapsed stale notice with workspace-change
row](docs/pr-screenshots/pr-5356/issue-thread-notices-collapsed.png)

Expanded stale notice details:

![Expanded stale notice
details](docs/pr-screenshots/pr-5356/issue-thread-notices-expanded.png)

## Risks

- Moderate risk: this touches issue activity serialization and
issue-thread rendering, both of which are central operator surfaces.
- Migration risk is low: the only migration change makes an existing
migration idempotent.
- No new migrations are introduced, so there is no cross-PR migration
ordering requirement.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5 coding agent, shell/tool-use enabled, used to
split the existing branch, verify the isolated PR branch, and create
this PR.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-06 09:00:54 -05:00
Dotta 68f69975a4 Harden control-plane safety and issue identifiers (#5292)
## Thinking Path

> - Paperclip relies on issue identifiers, execution policies, and agent
heartbeat rules to keep autonomous work auditable.
> - Safety checks need to reject ambiguous agent handoffs, and
identifier parsing needs to support Cloud tenant prefixes.
> - Agent instructions also need to make final-disposition rules
explicit so work does not stall in vague states.
> - This pull request isolates backend correctness and governance
hardening from the UI and recovery-system-notice branches.
> - The benefit is safer in-review transitions, better identifier
compatibility, and clearer agent operating contracts.

## What Changed

- Fixed run-aware confirmation ordering and interrupted-run state
cleanup.
- Added Cloud tenant identity bootstrap and alphanumeric issue
identifier support across shared parsing and server routes.
- Guarded agent-authored `in_review` updates unless a real review path
exists.
- Tightened heartbeat disposition instructions in adapter
utilities/default AGENTS/Paperclip skill.

## Verification

- `pnpm install --frozen-lockfile`
- `pnpm exec vitest run packages/shared/src/issue-references.test.ts
server/src/__tests__/issue-identifier-routes.test.ts
server/src/__tests__/issue-execution-policy-routes.test.ts
packages/adapter-utils/src/server-utils.test.ts` initially had the first
execution-policy test hit Vitest's 5s timeout under the parallel bundle
while the rest passed.
- `pnpm exec vitest run
server/src/__tests__/issue-execution-policy-routes.test.ts
--testTimeout=20000` passed with 10/10 tests.

- Follow-up: `pnpm run typecheck:build-gaps` passed.
- Follow-up: `pnpm --filter @paperclipai/ui typecheck` passed.
- Follow-up: `pnpm vitest run
server/src/__tests__/issue-comment-reopen-routes.test.ts
server/src/__tests__/company-portability.test.ts
server/src/__tests__/costs-service.test.ts` passed.
- Follow-up: `pnpm vitest run ui/src/context/LiveUpdatesProvider.test.ts
ui/src/lib/issue-chat-messages.test.ts
ui/src/lib/issue-reference.test.ts
ui/src/lib/issue-timeline-events.test.ts` passed.

## Risks

- Medium control-plane risk: in-review update validation changes agent
behavior. The error message is explicit and tests cover allowed review
paths.

## Model Used

- OpenAI GPT-5 Codex via Paperclip `codex_local` adapter, with
shell/git/GitHub CLI tool use.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-06 07:49:47 -05:00
Dotta a1b30c9f35 Add planning mode for issue work (#5353)
## Thinking Path

> - Paperclip is a control plane for autonomous AI companies.
> - Issues are the core unit of work, and issue comments are how board
users and agents coordinate execution.
> - Some issue conversations need to produce plans and approvals instead
of immediate implementation work.
> - The existing issue contract did not distinguish standard execution
comments from planning-oriented issue work.
> - This pull request adds an issue work-mode contract and board UI
affordances for standard vs planning mode.
> - The benefit is that planning-mode issues can be created, displayed,
discussed, and carried through agent heartbeat context without losing
the normal issue workflow.

## What Changed

- Added `standard` / `planning` issue work-mode contracts across DB,
shared validators/types, server issue flows, plugin protocol, and
adapter heartbeat payloads.
- Added an idempotent `0081_optimal_dormammu` migration for
`issues.work_mode`, ordered after current `public-gh/master` migrations.
- Updated heartbeat/context summaries and issue-thread interaction
behavior so planning work mode is preserved when creating suggested
follow-up issues.
- Added UI support for planning-mode issue creation, issue rows, detail
composer styling, and composer work-mode toggles.
- Added focused server/shared/UI tests plus a Playwright visual
verification spec for planning-mode surfaces.
- Rebased the branch onto current `public-gh/master` and added durable
planning-mode screenshots under `doc/assets/pap-3368/`.

## Verification

- `pnpm --filter @paperclipai/db run check:migrations`
- `pnpm exec vitest run --project @paperclipai/shared
packages/shared/src/validators/issue.test.ts`
- `pnpm exec vitest run --project @paperclipai/server
server/src/__tests__/heartbeat-context-summary.test.ts
server/src/__tests__/issue-thread-interactions-service.test.ts
server/src/__tests__/issues-goal-context-routes.test.ts --pool=forks
--poolOptions.forks.isolate=true`
- `pnpm exec vitest run --project @paperclipai/ui
ui/src/components/IssueChatThread.test.tsx
ui/src/components/NewIssueDialog.test.tsx
ui/src/components/IssueRow.test.tsx ui/src/pages/IssueDetail.test.tsx`
- `pnpm exec vitest run --project @paperclipai/adapter-utils
packages/adapter-utils/src/server-utils.test.ts`
- `PAPERCLIP_E2E_SKIP_LLM=true npx playwright test --config
tests/e2e/playwright.config.ts
tests/e2e/planning-mode-visual-verification.spec.ts`

## Screenshots

Desktop planning detail:

![Desktop planning
detail](https://raw.githubusercontent.com/paperclipai/paperclip/PAP-3368-plan-a-planning-mode-for-issues/doc/assets/pap-3368/desktop-planning-detail.png)

Desktop planning row:

![Desktop planning
row](https://raw.githubusercontent.com/paperclipai/paperclip/PAP-3368-plan-a-planning-mode-for-issues/doc/assets/pap-3368/desktop-planning-row.png)

Desktop staged standard toggle:

![Desktop staged standard
toggle](https://raw.githubusercontent.com/paperclipai/paperclip/PAP-3368-plan-a-planning-mode-for-issues/doc/assets/pap-3368/desktop-standard-toggle.png)

Mobile planning detail:

![Mobile planning
detail](https://raw.githubusercontent.com/paperclipai/paperclip/PAP-3368-plan-a-planning-mode-for-issues/doc/assets/pap-3368/mobile-planning-detail.png)

Mobile planning row:

![Mobile planning
row](https://raw.githubusercontent.com/paperclipai/paperclip/PAP-3368-plan-a-planning-mode-for-issues/doc/assets/pap-3368/mobile-planning-row.png)

## Risks

- Medium migration risk: this adds a non-null issue column. The
migration uses `ADD COLUMN IF NOT EXISTS` so installations that applied
an older branch-local migration number can still apply the final
numbered migration safely.
- Medium contract risk: issue payloads, plugin payloads, and adapter
heartbeat payloads now include work mode; compatibility is handled by
defaulting missing values to `standard`.
- UI risk is moderate because composer controls changed; focused
component tests and visual e2e coverage exercise standard vs planning
display and toggle behavior.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5 coding agent in a local Paperclip worktree, with
shell/tool use. Exact context-window size is not exposed in this
runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-06 07:01:28 -05:00
Dotta 320fd5d23b Add full company search page (#5293)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies.
> - Operators need to find work, documents, agents, projects, comments,
and activity across a company without jumping through separate surfaces.
> - The existing Command-K flow was useful for fast navigation but not
enough for deeper company-wide discovery.
> - Search also needs company-scoped backend contracts, query cost
controls, and indexed document matching so it stays safe as company data
grows.
> - This pull request adds a full company search API and a dedicated
board search page that Command-K can hand off to.
> - The benefit is a single searchable control-plane surface with richer
result context, recents, highlights, and test coverage across server and
UI behavior.

## What Changed

- Added a company-scoped search endpoint/service with query validation,
rate limiting, text matching, fuzzy title matching, and result typing
shared through `@paperclipai/shared`.
- Added idempotent search migrations for document search indexes and
fuzzy matching support.
- Added the full `/companies/:companyKey/search` UI, search result row
components, highlighted snippets, recent searches, and sidebar/Command-K
handoff.
- Added Storybook coverage for search surfaces and Vitest coverage for
server search behavior, rate limiting, route generation, Command-K
behavior, and the search page.
- Addressed Greptile findings by renaming the no-match SQL helper,
applying search pagination after cross-type merge sorting, and
lazy-initializing the default search service so unrelated route-test
mocks do not need to know about it.
- Merged current `public-gh/master` and renumbered the search migrations
behind upstream `0078_white_darwin`: search indexes are now
`0079_company_search_document_indexes` and fuzzy matching is
`0080_company_search_fuzzystrmatch`.

## Verification

- `git fetch public-gh master`
- `git diff --check public-gh/master...HEAD`
- `git diff --name-only public-gh/master...HEAD | rg '^pnpm-lock\.yaml$'
|| true` produced no output before opening the PR.
- `pnpm run preflight:workspace-links && pnpm exec vitest run
server/src/__tests__/company-search-service.test.ts
server/src/__tests__/company-search-rate-limit-routes.test.ts
ui/src/pages/Search.test.tsx ui/src/components/CommandPalette.test.tsx
ui/src/lib/company-routes.test.ts` passed: 5 files, 25 tests.
- `pnpm --filter @paperclipai/shared typecheck && pnpm --filter
@paperclipai/db typecheck && pnpm --filter @paperclipai/server typecheck
&& pnpm --filter @paperclipai/ui typecheck` passed.
- `pnpm exec vitest run
server/src/__tests__/company-search-service.test.ts
server/src/__tests__/company-search-rate-limit-routes.test.ts && pnpm
--filter @paperclipai/server typecheck` passed after Greptile pagination
fixes.
- `pnpm exec vitest run
server/src/__tests__/issue-agent-mutation-ownership-routes.test.ts
server/src/__tests__/company-search-rate-limit-routes.test.ts
server/src/__tests__/company-search-service.test.ts && pnpm --filter
@paperclipai/server typecheck` passed after the CI mock fix.
- After resolving the migration conflict with current
`public-gh/master`: `pnpm --filter @paperclipai/db typecheck && pnpm
exec vitest run server/src/__tests__/company-search-service.test.ts
server/src/__tests__/company-search-rate-limit-routes.test.ts && pnpm
--filter @paperclipai/server typecheck` passed.
- DB migration numbering check passed as part of `@paperclipai/db`
typecheck.
- UI states are covered by the added Storybook stories in
`ui/storybook/stories/search.stories.tsx`.
- GitHub reports the PR merge state as `CLEAN` on head `18e54fa8`.
- GitHub PR checks are green on head `18e54fa8`: policy, verify,
serialized server shards 1/4 through 4/4, e2e, canary dry run, Snyk, and
Greptile Review.

## Risks

- Search ranking and snippets are new user-facing behavior, so reviewers
should check whether result ordering feels right on real company data.
- Search touches broad company data, so company scoping and query
cost/rate-limit behavior should be reviewed carefully.
- The migrations add search indexes/extensions; they are idempotent with
`IF NOT EXISTS` for users who may have applied an earlier branch
migration number.

> ROADMAP.md checked. This PR adds a focused board search surface and
does not duplicate an open roadmap item.

## Model Used

- OpenAI Codex, GPT-5 coding agent, tool-enabled shell/git/GitHub CLI
session with medium reasoning effort. Existing branch commits were
produced across prior agent sessions; this packaging pass verified,
opened the PR, addressed Greptile findings, resolved migration conflicts
after upstream PRs landed, and got PR checks green.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Opus 4.7 <noreply@anthropic.com>
2026-05-06 06:32:37 -05:00
Dotta 424e81d087 Improve operator workflow QoL (#5291)
## Thinking Path

> - Paperclip is a control plane operators use repeatedly to supervise
agent companies.
> - Common operator workflows depend on fast scanning of inboxes, issue
sidebars, workspaces, cost totals, and runtime services.
> - Several small UI and service gaps made those workflows slower or
less clear.
> - This pull request groups the operator-facing QoL changes that can
stand alone from recovery and adapter work.
> - The benefit is a denser, clearer board experience for issue triage
and workspace operation.

## What Changed

- Added inbox assignee/project grouping and issue list token/runtime
totals.
- Improved issue properties with removable blocker chips and workspace
task links.
- Improved execution workspace layout, runtime controls, issues tab
default, and stopped-port reuse behavior.
- Added mobile markdown/routine dialog fixes, page title company names,
sidebar polish, and dashboard run task label cleanup.

## Verification

- `pnpm install --frozen-lockfile`
- `pnpm exec vitest run ui/src/lib/inbox.test.ts
ui/src/components/IssueProperties.test.tsx
ui/src/components/WorkspaceRuntimeControls.test.tsx
server/src/__tests__/workspace-runtime.test.ts
server/src/__tests__/costs-service.test.ts`

## Risks

- Medium UI risk because this touches several operator surfaces. The
branch is intentionally grouped around workflow/QoL files and keeps the
file count below the Greptile limit.

## Model Used

- OpenAI GPT-5 Codex via Paperclip `codex_local` adapter, with
shell/git/GitHub CLI tool use.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-06 06:30:44 -05:00
Dotta 11ffd6f2c5 Improve ACPX adapter configuration (#5290)
## Thinking Path

> - Paperclip orchestrates AI agents across several adapter
implementations.
> - ACPX is a local adapter path that can proxy Claude and Codex-style
execution.
> - Its configuration needed stronger schema defaults, provider-aware
model handling, and better UI support.
> - Plugin authors also need clear docs for managed resources.
> - This pull request improves ACPX adapter configuration and documents
plugin-managed resources.
> - The benefit is a more predictable adapter setup path without
changing unrelated control-plane behavior.

## What Changed

- Improved ACPX config schema, execution config handling, UI build
config, and route coverage.
- Added ACPX model filtering support and tests.
- Updated the agent config form and storybook coverage for ACPX
model/provider behavior.
- Expanded plugin authoring documentation for managed resources.

## Verification

- `pnpm install --frozen-lockfile`
- `pnpm exec vitest run server/src/__tests__/acpx-local-execute.test.ts
server/src/__tests__/adapter-routes.test.ts
ui/src/lib/acpx-model-filter.test.ts`

## Risks

- Low-to-medium risk: adapter configuration behavior changes can affect
ACPX users, but the change is isolated to ACPX/plugin-doc surfaces and
covered by targeted adapter tests.

## Model Used

- OpenAI GPT-5 Codex via Paperclip `codex_local` adapter, with
shell/git/GitHub CLI tool use.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-06 06:06:47 -05:00
Dotta 454edfe81e Add recovery handoff system notices (#5289)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies.
> - Agent runs can end productively while the source issue still lacks a
durable final disposition.
> - That leaves the control plane unsure whether to resume, escalate, or
close the work.
> - Issue comments also need a presentation contract so system-authored
recovery notices can render as first-class thread messages without
overloading normal comments.
> - This pull request adds successful-run handoff recovery, comment
presentation metadata, and system notice rendering.
> - The benefit is stricter task liveness with clearer operator-facing
recovery state.

## What Changed

- Added successful-run handoff decisions, wake payloads, escalation
behavior, and recovery tests.
- Added issue comment presentation metadata with migration
`0078_white_darwin.sql` and shared/server/company portability support.
- Rendered recovery/system notices in issue chat with dedicated UI
components, fixtures, tests, and storybook/lab coverage.
- Included the current recovery model-profile hint patch so automatic
recovery follow-ups use the cheap profile.

## Verification

- `pnpm install --frozen-lockfile`
- `pnpm exec vitest run
server/src/services/recovery/successful-run-handoff.test.ts
ui/src/components/SystemNotice.test.tsx
ui/src/lib/system-notice-comment.test.ts
ui/src/components/IssueChatThreadSystemNotice.test.tsx`

## Risks

- Migration-bearing PR: merge this before any other branch that might
later add a migration.
- The branch touches both recovery services and issue-thread rendering,
so review should pay attention to recovery wake idempotency and comment
metadata compatibility.

## Model Used

- OpenAI GPT-5 Codex via Paperclip `codex_local` adapter, with
shell/git/GitHub CLI tool use.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-06 06:05:58 -05:00